RNA–Protein interactions for RNA: ENST00000519485.1

CSMD3-209, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 3

Gene CSMD3, Length 452 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-209ENST00000519485 XIRP2A4UGR9 3374 aa2.24□□□□□ -2.05
CSMD3-209ENST00000519485 A8MUN3 132 aa2.23□□□□□ -2.05
CSMD3-209ENST00000519485 C3orf84H3BNL1 204 aa2.23□□□□□ -2.05
CSMD3-209ENST00000519485 M0R2N4 97 aa2.23□□□□□ -2.05
CSMD3-209ENST00000519485 TLX1NBP0CAT3 122 aa2.23□□□□□ -2.05
CSMD3-209ENST00000519485 C9orf116Q5BN46 136 aaPredicted RBP2.23□□□□□ -2.05
CSMD3-209ENST00000519485 CLPSL2Q6UWE3 100 aa2.23□□□□□ -2.05
CSMD3-209ENST00000519485 Q6ZRX8 168 aa2.23□□□□□ -2.05
CSMD3-209ENST00000519485 SPTSSBQ8NFR3 76 aa2.23□□□□□ -2.05
CSMD3-209ENST00000519485 PRR15LQ9BU68 103 aa2.23□□□□□ -2.05
CSMD3-209ENST00000519485 C6orf48Q9UBA6 75 aa2.23□□□□□ -2.05
CSMD3-209ENST00000519485 ZZEF1O43149 2961 aa2.23□□□□□ -2.05
CSMD3-209ENST00000519485 NBEAQ8NFP9 2946 aa2.23□□□□□ -2.05
CSMD3-209ENST00000519485 MED13LQ71F56 2210 aa2.22□□□□□ -2.05
CSMD3-209ENST00000519485 ZDBF2Q9HCK1 2354 aa2.22□□□□□ -2.05
CSMD3-209ENST00000519485 IGLV10-54A0A075B6I4 117 aa2.22□□□□□ -2.05
CSMD3-209ENST00000519485 FAM168BA1KXE4 195 aa2.22□□□□□ -2.05
CSMD3-209ENST00000519485 H0Y9P7 68 aa2.22□□□□□ -2.05
CSMD3-209ENST00000519485 GIG44P09565 113 aaPredicted RBP2.22□□□□□ -2.05
CSMD3-209ENST00000519485 Q5VV11 94 aa2.22□□□□□ -2.05
CSMD3-209ENST00000519485 CASC2Q6XLA1 102 aa2.22□□□□□ -2.05
CSMD3-209ENST00000519485 Q8N9L7 120 aa2.22□□□□□ -2.05
CSMD3-209ENST00000519485 DEFB105AQ8NG35 78 aa2.22□□□□□ -2.05
CSMD3-209ENST00000519485 RBM12B-AS1Q9P1G2 102 aa2.22□□□□□ -2.05
CSMD3-209ENST00000519485 KLK12Q9UKR0 248 aa2.22□□□□□ -2.05
CSMD3-209ENST00000519485 CNOT1A5YKK6 2376 aaKnown RBP2.22□□□□□ -2.05
CSMD3-209ENST00000519485 FRYQ5TBA9 3013 aa2.22□□□□□ -2.05
CSMD3-209ENST00000519485 LAMA3Q16787 3333 aa2.21□□□□□ -2.06
CSMD3-209ENST00000519485 LRCOL1A6NCL2 159 aa2.21□□□□□ -2.06
CSMD3-209ENST00000519485 KRTAP11-1Q8IUC1 163 aa2.21□□□□□ -2.06
CSMD3-209ENST00000519485 CDH23Q9H251 3354 aa2.21□□□□□ -2.06
CSMD3-209ENST00000519485 XAGE1AQ9HD64 81 aa2.21□□□□□ -2.06
CSMD3-209ENST00000519485 LINC01558Q9Y6Z2 57 aa2.21□□□□□ -2.06
CSMD3-209ENST00000519485 VCANP13611 3396 aa2.21□□□□□ -2.06
CSMD3-209ENST00000519485 APC2O95996 2303 aa2.2□□□□□ -2.06
CSMD3-209ENST00000519485 PCNX1Q96RV3 2341 aa2.2□□□□□ -2.06
CSMD3-209ENST00000519485 PRRC2CQ9Y520 2896 aaKnown RBP2.2□□□□□ -2.06
CSMD3-209ENST00000519485 CACNA1HO95180 2353 aa2.2□□□□□ -2.06
CSMD3-209ENST00000519485 IGLV8-61A0A075B6I0 122 aa2.2□□□□□ -2.06
CSMD3-209ENST00000519485 IGKV2D-24A0A075B6R9 120 aa2.2□□□□□ -2.06
CSMD3-209ENST00000519485 A0A1W2PNM2 257 aa2.2□□□□□ -2.06
CSMD3-209ENST00000519485 C16orf90A8MZG2 172 aa2.2□□□□□ -2.06
CSMD3-209ENST00000519485 EP300Q09472 2414 aaPredicted RBP2.2□□□□□ -2.06
CSMD3-209ENST00000519485 COL6A6A6NMZ7 2263 aa2.2□□□□□ -2.06
CSMD3-209ENST00000519485 SPTBN1Q01082 2364 aaKnown RBP2.2□□□□□ -2.06
CSMD3-209ENST00000519485 PTPRQQ9UMZ3 2332 aa2.19□□□□□ -2.06
CSMD3-209ENST00000519485 IGLV1-50A0A075B6I6 118 aa2.19□□□□□ -2.06
CSMD3-209ENST00000519485 A0A096LPF7 62 aa2.19□□□□□ -2.06
CSMD3-209ENST00000519485 A6NN06 94 aa2.19□□□□□ -2.06
CSMD3-209ENST00000519485 A8MWP4 228 aa2.19□□□□□ -2.06
CSMD3-209ENST00000519485 K7EQZ3 153 aa2.19□□□□□ -2.06
CSMD3-209ENST00000519485 SPRR1AP35321 89 aa2.19□□□□□ -2.06
CSMD3-209ENST00000519485 RPL37AP61513 92 aaKnown RBP2.19□□□□□ -2.06
CSMD3-209ENST00000519485 DEFB113Q30KQ7 82 aa2.19□□□□□ -2.06
CSMD3-209ENST00000519485 COA5Q86WW8 74 aa2.19□□□□□ -2.06
CSMD3-209ENST00000519485 Q8NDZ9 215 aa2.19□□□□□ -2.06
CSMD3-209ENST00000519485 DSPP15924 2871 aaKnown RBP2.19□□□□□ -2.06
CSMD3-209ENST00000519485 TRIOO75962 3097 aa2.19□□□□□ -2.06
CSMD3-209ENST00000519485 USP34Q70CQ2 3546 aa2.18□□□□□ -2.06
CSMD3-209ENST00000519485 WDFY3Q8IZQ1 3526 aa2.18□□□□□ -2.06
CSMD3-209ENST00000519485 DEFB131BA0A096LNP1 70 aa2.18□□□□□ -2.06
CSMD3-209ENST00000519485 H0Y9J4 135 aa2.18□□□□□ -2.06
CSMD3-209ENST00000519485 CNBPP62633 177 aaKnown RBP2.18□□□□□ -2.06
CSMD3-209ENST00000519485 MOBPQ13875 183 aa2.18□□□□□ -2.06
CSMD3-209ENST00000519485 LINC01556Q5JQF7 62 aa2.18□□□□□ -2.06
CSMD3-209ENST00000519485 WFDC10BQ8IUB3 73 aa2.18□□□□□ -2.06
CSMD3-209ENST00000519485 C9orf163Q8N9P6 203 aa2.18□□□□□ -2.06
CSMD3-209ENST00000519485 C7orf33Q8WU49 177 aa2.18□□□□□ -2.06
CSMD3-209ENST00000519485 GPR179Q6PRD1 2367 aa2.18□□□□□ -2.06
CSMD3-209ENST00000519485 ACACAQ13085 2346 aa2.17□□□□□ -2.06
CSMD3-209ENST00000519485 C8orf87E5RJ46 101 aa2.17□□□□□ -2.06
CSMD3-209ENST00000519485 ACYP2P14621 99 aa2.17□□□□□ -2.06
CSMD3-209ENST00000519485 WFDC13Q8IUB5 93 aa2.17□□□□□ -2.06
CSMD3-209ENST00000519485 ST20-AS1Q8NBB2 130 aa2.17□□□□□ -2.06
CSMD3-209ENST00000519485 RETNLBQ9BQ08 111 aa2.17□□□□□ -2.06
CSMD3-209ENST00000519485 ANAPC11Q9NYG5 84 aa2.17□□□□□ -2.06
CSMD3-209ENST00000519485 CFAP54Q96N23 3096 aa2.17□□□□□ -2.06
CSMD3-209ENST00000519485 COL6A3P12111 3177 aa2.17□□□□□ -2.06
CSMD3-209ENST00000519485 NCOR1O75376 2440 aa2.17□□□□□ -2.06
CSMD3-209ENST00000519485 SPTBN5Q9NRC6 3674 aaKnown RBP2.16□□□□□ -2.06
CSMD3-209ENST00000519485 OTOGLQ3ZCN5 2332 aa2.16□□□□□ -2.06
CSMD3-209ENST00000519485 SORL1Q92673 2214 aa2.16□□□□□ -2.06
CSMD3-209ENST00000519485 KRTAP4-16G5E9R7 235 aaPredicted RBP2.16□□□□□ -2.06
CSMD3-209ENST00000519485 PRB2P02812 416 aaPredicted RBP2.16□□□□□ -2.06
CSMD3-209ENST00000519485 HTN3P15516 51 aa2.16□□□□□ -2.06
CSMD3-209ENST00000519485 PRR4Q16378 134 aa2.16□□□□□ -2.06
CSMD3-209ENST00000519485 C15orf56Q8N910 161 aa2.16□□□□□ -2.06
CSMD3-209ENST00000519485 Q8NAQ8 132 aa2.16□□□□□ -2.06
CSMD3-209ENST00000519485 VPS13AQ96RL7 3174 aa2.16□□□□□ -2.06
CSMD3-209ENST00000519485 KALRNO60229 2985 aa2.16□□□□□ -2.06
CSMD3-209ENST00000519485 MUC19Q7Z5P9 8384 aa2.16□□□□□ -2.06
CSMD3-209ENST00000519485 PTPRZ1P23471 2315 aaPredicted RBP2.16□□□□□ -2.06
CSMD3-209ENST00000519485 A0A087WSZ3 146 aa2.15□□□□□ -2.07
CSMD3-209ENST00000519485 PRB1P04280 392 aa2.15□□□□□ -2.07
CSMD3-209ENST00000519485 SPRR1BP22528 89 aa2.15□□□□□ -2.07
CSMD3-209ENST00000519485 DEFB135Q30KP9 77 aa2.15□□□□□ -2.07
CSMD3-209ENST00000519485 IGFL1Q6UW32 110 aa2.15□□□□□ -2.07
CSMD3-209ENST00000519485 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP2.15□□□□□ -2.07
CSMD3-209ENST00000519485 FRYLO94915 3013 aa2.15□□□□□ -2.07
CSMD3-209ENST00000519485 TRIOBPQ9H2D6 2365 aa2.15□□□□□ -2.07
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms