RNA–Protein interactions for RNA: ENST00000514987.5

NUP54-217, Transcript of nucleoporin 54, humanhuman

TSL 2 BASIC

Gene NUP54, Length 1,563 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-217ENST00000514987 CXCL6P80162 114 aa9.62□□□□□ -0.87
NUP54-217ENST00000514987 Q6ZVQ6 151 aa9.62□□□□□ -0.87
NUP54-217ENST00000514987 SERP2Q8N6R1 65 aa9.62□□□□□ -0.87
NUP54-217ENST00000514987 SS18L2Q9UHA2 77 aa9.62□□□□□ -0.87
NUP54-217ENST00000514987 A0A087WVE0 104 aa9.61□□□□□ -0.87
NUP54-217ENST00000514987 BCE1O60756 84 aa9.61□□□□□ -0.87
NUP54-217ENST00000514987 SPRR1AP35321 89 aa9.61□□□□□ -0.87
NUP54-217ENST00000514987 ETDCA0A1B0GVM5 59 aa9.6□□□□□ -0.87
NUP54-217ENST00000514987 Q6ZRX8 168 aa9.6□□□□□ -0.87
NUP54-217ENST00000514987 LINC01547P58512 204 aaPredicted RBP9.59□□□□□ -0.87
NUP54-217ENST00000514987 KRTAP4-16G5E9R7 235 aaPredicted RBP9.58□□□□□ -0.88
NUP54-217ENST00000514987 CRYGAP11844 174 aa9.58□□□□□ -0.88
NUP54-217ENST00000514987 M0R2N4 97 aa9.58□□□□□ -0.88
NUP54-217ENST00000514987 HAMPP81172 84 aa9.58□□□□□ -0.88
NUP54-217ENST00000514987 MRPL55Q7Z7F7 128 aaKnown RBP9.58□□□□□ -0.88
NUP54-217ENST00000514987 A0A1B0GW54 56 aa9.57□□□□□ -0.88
NUP54-217ENST00000514987 C14orf177Q52M58 125 aa9.57□□□□□ -0.88
NUP54-217ENST00000514987 FAM19A1Q7Z5A9 133 aa9.57□□□□□ -0.88
NUP54-217ENST00000514987 CNBPP62633 177 aaKnown RBP9.56□□□□□ -0.88
NUP54-217ENST00000514987 UBE2DNLQ8IWF7 75 aa9.56□□□□□ -0.88
NUP54-217ENST00000514987 FAM168BA1KXE4 195 aa9.55□□□□□ -0.88
NUP54-217ENST00000514987 RPL37AP8A6NKH3 93 aa9.55□□□□□ -0.88
NUP54-217ENST00000514987 Q8N377 158 aa9.55□□□□□ -0.88
NUP54-217ENST00000514987 B9D2Q9BPU9 175 aa9.55□□□□□ -0.88
NUP54-217ENST00000514987 ANK2Q01484 3957 aa9.55□□□□□ -0.88
NUP54-217ENST00000514987 IGLV5-48A0A075B6I7 105 aa9.54□□□□□ -0.88
NUP54-217ENST00000514987 APLNQ9ULZ1 77 aa9.54□□□□□ -0.88
NUP54-217ENST00000514987 NOTCH1P46531 2555 aa9.54□□□□□ -0.88
NUP54-217ENST00000514987 PSCAO43653 123 aa9.54□□□□□ -0.88
NUP54-217ENST00000514987 FAM19A5Q7Z5A7 132 aaPredicted RBP9.54□□□□□ -0.88
NUP54-217ENST00000514987 KRTAP7-1Q8IUC3 87 aa9.54□□□□□ -0.88
NUP54-217ENST00000514987 SMIM20Q8N5G0 67 aa9.54□□□□□ -0.88
NUP54-217ENST00000514987 COL6A5A8TX70 2615 aa9.53□□□□□ -0.88
NUP54-217ENST00000514987 DEFB105AQ8NG35 78 aa9.53□□□□□ -0.88
NUP54-217ENST00000514987 PKIGQ9Y2B9 76 aa9.53□□□□□ -0.88
NUP54-217ENST00000514987 C16orf90A8MZG2 172 aa9.52□□□□□ -0.89
NUP54-217ENST00000514987 Q9BRP9 147 aa9.52□□□□□ -0.89
NUP54-217ENST00000514987 REG3GQ6UW15 175 aa9.51□□□□□ -0.89
NUP54-217ENST00000514987 KRTAP1-5Q9BYS1 174 aa9.5□□□□□ -0.89
NUP54-217ENST00000514987 FUSP35637 526 aaKnown RBP eCLIP9.49□□□□□ -0.89
NUP54-217ENST00000514987 NREPQ16612 68 aa9.48□□□□□ -0.89
NUP54-217ENST00000514987 TRAV7A0A075B6U4 112 aa9.47□□□□□ -0.89
NUP54-217ENST00000514987 UBE2BP63146 152 aa9.47□□□□□ -0.89
NUP54-217ENST00000514987 HUWE1Q7Z6Z7 4374 aaKnown RBP9.47□□□□□ -0.89
NUP54-217ENST00000514987 NBEAL1Q6ZS30 2694 aa9.46□□□□□ -0.89
NUP54-217ENST00000514987 NUPR2A6NF83 97 aa9.46□□□□□ -0.89
NUP54-217ENST00000514987 A0A096LNI7 61 aa9.46□□□□□ -0.9
NUP54-217ENST00000514987 TNP2Q05952 138 aa9.46□□□□□ -0.9
NUP54-217ENST00000514987 C1orf137Q5JT78 98 aa9.44□□□□□ -0.9
NUP54-217ENST00000514987 TMEM258P61165 79 aa9.43□□□□□ -0.9
NUP54-217ENST00000514987 ST20-AS1Q8NBB2 130 aa9.43□□□□□ -0.9
NUP54-217ENST00000514987 MDFIQ99750 246 aa9.42□□□□□ -0.9
NUP54-217ENST00000514987 IGKV2-24A0A0C4DH68 120 aa9.41□□□□□ -0.9
NUP54-217ENST00000514987 BPY2O14599 106 aa9.41□□□□□ -0.9
NUP54-217ENST00000514987 ERC2-IT1O76042 136 aa9.41□□□□□ -0.9
NUP54-217ENST00000514987 Q8NBF4 154 aa9.41□□□□□ -0.9
NUP54-217ENST00000514987 DNAH1Q9P2D7 4330 aa9.41□□□□□ -0.9
NUP54-217ENST00000514987 NBDYA0A0U1RRE5 68 aa9.41□□□□□ -0.9
NUP54-217ENST00000514987 F8WEM9 126 aa9.41□□□□□ -0.9
NUP54-217ENST00000514987 SCXQ7RTU7 201 aa9.41□□□□□ -0.9
NUP54-217ENST00000514987 LINC00474Q9P2X8 69 aa9.41□□□□□ -0.9
NUP54-217ENST00000514987 A0A1W2PNN7 141 aa9.4□□□□□ -0.9
NUP54-217ENST00000514987 SPRR4Q96PI1 79 aa9.4□□□□□ -0.9
NUP54-217ENST00000514987 A0A1W2PNM2 257 aa9.39□□□□□ -0.91
NUP54-217ENST00000514987 C3orf84H3BNL1 204 aa9.39□□□□□ -0.91
NUP54-217ENST00000514987 C9orf163Q8N9P6 203 aa9.39□□□□□ -0.91
NUP54-217ENST00000514987 H0Y9J4 135 aa9.38□□□□□ -0.91
NUP54-217ENST00000514987 IGLV2-33A0A075B6J2 118 aaPredicted RBP9.37□□□□□ -0.91
NUP54-217ENST00000514987 LRCOL1A6NCL2 159 aa9.37□□□□□ -0.91
NUP54-217ENST00000514987 MGAM2Q2M2H8 2515 aa9.37□□□□□ -0.91
NUP54-217ENST00000514987 IGKV4-1P06312 121 aa9.37□□□□□ -0.91
NUP54-217ENST00000514987 SMIM29Q86T20 159 aa9.37□□□□□ -0.91
NUP54-217ENST00000514987 RPS28P62857 69 aaKnown RBP9.36□□□□□ -0.91
NUP54-217ENST00000514987 C20orf197Q8N268 126 aa9.35□□□□□ -0.91
NUP54-217ENST00000514987 IGLV8-61A0A075B6I0 122 aa9.34□□□□□ -0.91
NUP54-217ENST00000514987 CYSTM1Q9H1C7 97 aa9.34□□□□□ -0.91
NUP54-217ENST00000514987 J3KT08 172 aa9.33□□□□□ -0.92
NUP54-217ENST00000514987 KLKP1Q107X0 134 aa9.33□□□□□ -0.92
NUP54-217ENST00000514987 Q6ZRN7 208 aaPredicted RBP9.33□□□□□ -0.92
NUP54-217ENST00000514987 LINC00476Q8WZB0 136 aa9.33□□□□□ -0.92
NUP54-217ENST00000514987 PRLHP81277 87 aa9.32□□□□□ -0.92
NUP54-217ENST00000514987 HIGD2AQ9BW72 106 aa9.32□□□□□ -0.92
NUP54-217ENST00000514987 SPRR1BP22528 89 aa9.31□□□□□ -0.92
NUP54-217ENST00000514987 PHF5AQ7RTV0 110 aaKnown RBP9.31□□□□□ -0.92
NUP54-217ENST00000514987 STAB2Q8WWQ8 2551 aa9.3□□□□□ -0.92
NUP54-217ENST00000514987 NDUFC1O43677 76 aa9.29□□□□□ -0.92
NUP54-217ENST00000514987 CHTF8P0CG12 524 aa9.29□□□□□ -0.92
NUP54-217ENST00000514987 UBE2AP49459 152 aa9.29□□□□□ -0.92
NUP54-217ENST00000514987 Q8N9L7 120 aa9.29□□□□□ -0.92
NUP54-217ENST00000514987 EPM2AB3EWF7 344 aa9.28□□□□□ -0.92
NUP54-217ENST00000514987 IGFL1Q6UW32 110 aa9.28□□□□□ -0.92
NUP54-217ENST00000514987 DPH3Q96FX2 82 aa9.27□□□□□ -0.93
NUP54-217ENST00000514987 DNAH9Q9NYC9 4486 aa9.26□□□□□ -0.93
NUP54-217ENST00000514987 DYNC2H1Q8NCM8 4307 aaKnown RBP9.26□□□□□ -0.93
NUP54-217ENST00000514987 COL7A1Q02388 2944 aa9.25□□□□□ -0.93
NUP54-217ENST00000514987 OCR1Q9BZK8 76 aa9.24□□□□□ -0.93
NUP54-217ENST00000514987 H7BZZ5 65 aa9.24□□□□□ -0.93
NUP54-217ENST00000514987 KRTAP11-1Q8IUC1 163 aa9.23□□□□□ -0.93
NUP54-217ENST00000514987 FAM236DA0A1B0GTK5 79 aa9.22□□□□□ -0.93
NUP54-217ENST00000514987 FAM236CP0DP71 79 aa9.22□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms