RNA–Protein interactions for RNA: ENST00000509769.5

USP53-205, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-205ENST00000509769 ICE1Q9Y2F5 2266 aa2.33□□□□□ -2.04
USP53-205ENST00000509769 DNAH10OSP0CZ25 163 aa2.33□□□□□ -2.04
USP53-205ENST00000509769 ARHGAP21Q5T5U3 1957 aa2.33□□□□□ -2.04
USP53-205ENST00000509769 DOCK10Q96BY6 2186 aa2.33□□□□□ -2.04
USP53-205ENST00000509769 LCE6AA0A183 80 aa2.32□□□□□ -2.04
USP53-205ENST00000509769 C19orf73Q9NVV2 129 aa2.32□□□□□ -2.04
USP53-205ENST00000509769 KNL1Q8NG31 2342 aa2.32□□□□□ -2.04
USP53-205ENST00000509769 PRRC2AP48634 2157 aaKnown RBP2.32□□□□□ -2.04
USP53-205ENST00000509769 KRTAP1-3Q8IUG1 177 aa2.32□□□□□ -2.04
USP53-205ENST00000509769 Q6ZSN1 163 aa2.32□□□□□ -2.04
USP53-205ENST00000509769 DYSFO75923 2080 aa2.32□□□□□ -2.04
USP53-205ENST00000509769 ZNF575Q86XF7 245 aa2.31□□□□□ -2.04
USP53-205ENST00000509769 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP2.31□□□□□ -2.04
USP53-205ENST00000509769 ARFGEF3Q5TH69 2177 aa2.31□□□□□ -2.04
USP53-205ENST00000509769 DEFB4AO15263 64 aa2.31□□□□□ -2.04
USP53-205ENST00000509769 SDK1Q7Z5N4 2213 aa2.31□□□□□ -2.04
USP53-205ENST00000509769 COL27A1Q8IZC6 1860 aaPredicted RBP2.31□□□□□ -2.04
USP53-205ENST00000509769 RTTNQ86VV8 2226 aa2.31□□□□□ -2.04
USP53-205ENST00000509769 A0A1W2PNM2 257 aa2.31□□□□□ -2.04
USP53-205ENST00000509769 TYMSOSQ8TAI1 123 aa2.31□□□□□ -2.04
USP53-205ENST00000509769 ANAPC11Q9NYG5 84 aa2.31□□□□□ -2.04
USP53-205ENST00000509769 CEP295Q9C0D2 2601 aa2.31□□□□□ -2.04
USP53-205ENST00000509769 SEC16AO15027 2179 aa2.3□□□□□ -2.04
USP53-205ENST00000509769 FAM229BQ4G0N7 80 aa2.3□□□□□ -2.04
USP53-205ENST00000509769 GTF3C1Q12789 2109 aa2.3□□□□□ -2.04
USP53-205ENST00000509769 DSCR10P59022 87 aa2.3□□□□□ -2.04
USP53-205ENST00000509769 SPACA4Q8TDM5 124 aa2.3□□□□□ -2.04
USP53-205ENST00000509769 DIDO1Q9BTC0 2240 aaKnown RBP2.3□□□□□ -2.04
USP53-205ENST00000509769 CNBPP62633 177 aaKnown RBP2.29□□□□□ -2.04
USP53-205ENST00000509769 CPAMD8Q8IZJ3 1885 aa2.29□□□□□ -2.04
USP53-205ENST00000509769 AGRNO00468 2067 aa2.29□□□□□ -2.04
USP53-205ENST00000509769 H1FX-AS1Q4G0G2 97 aa2.29□□□□□ -2.04
USP53-205ENST00000509769 SDK2Q58EX2 2172 aa2.29□□□□□ -2.04
USP53-205ENST00000509769 UBR5O95071 2799 aaPredicted RBP2.29□□□□□ -2.04
USP53-205ENST00000509769 KRTAP1-1Q07627 177 aa2.29□□□□□ -2.04
USP53-205ENST00000509769 Q6ZR54 194 aa2.29□□□□□ -2.04
USP53-205ENST00000509769 KIAA1549Q9HCM3 1950 aa2.29□□□□□ -2.04
USP53-205ENST00000509769 NOTCH2Q04721 2471 aa2.29□□□□□ -2.04
USP53-205ENST00000509769 ZNF861PO60384 105 aa2.29□□□□□ -2.04
USP53-205ENST00000509769 ZCCHC13Q8WW36 166 aaKnown RBP2.29□□□□□ -2.04
USP53-205ENST00000509769 WNK2Q9Y3S1 2297 aa2.28□□□□□ -2.04
USP53-205ENST00000509769 SPRR1BP22528 89 aa2.28□□□□□ -2.04
USP53-205ENST00000509769 OXTP01178 125 aa2.28□□□□□ -2.04
USP53-205ENST00000509769 PP632Q6XCG6 107 aa2.28□□□□□ -2.04
USP53-205ENST00000509769 SPTBN5Q9NRC6 3674 aaKnown RBP2.28□□□□□ -2.04
USP53-205ENST00000509769 NBASA2RRP1 2371 aa2.28□□□□□ -2.04
USP53-205ENST00000509769 MMP24-AS1A0A0U1RRL7 71 aa2.28□□□□□ -2.05
USP53-205ENST00000509769 NCOA6Q14686 2063 aaPredicted RBP2.27□□□□□ -2.05
USP53-205ENST00000509769 M0R2N4 97 aa2.27□□□□□ -2.05
USP53-205ENST00000509769 ALPK2Q86TB3 2170 aa2.27□□□□□ -2.05
USP53-205ENST00000509769 DSCAML1Q8TD84 2053 aa2.27□□□□□ -2.05
USP53-205ENST00000509769 TNCP24821 2201 aa2.27□□□□□ -2.05
USP53-205ENST00000509769 LINC00612Q8N6U2 182 aa2.27□□□□□ -2.05
USP53-205ENST00000509769 DNAJC13O75165 2243 aa2.26□□□□□ -2.05
USP53-205ENST00000509769 LINC00304Q8N9R0 145 aa2.26□□□□□ -2.05
USP53-205ENST00000509769 LRRK2Q5S007 2527 aa2.26□□□□□ -2.05
USP53-205ENST00000509769 PLAC4Q8WY50 150 aa2.26□□□□□ -2.05
USP53-205ENST00000509769 DSCAMO60469 2012 aa2.26□□□□□ -2.05
USP53-205ENST00000509769 MALRD1Q5VYJ5 2156 aa2.26□□□□□ -2.05
USP53-205ENST00000509769 USP9YO00507 2555 aaPredicted RBP2.25□□□□□ -2.05
USP53-205ENST00000509769 CASC10Q5T4H9 136 aa2.25□□□□□ -2.05
USP53-205ENST00000509769 SPTBN1Q01082 2364 aaKnown RBP2.25□□□□□ -2.05
USP53-205ENST00000509769 MTORP42345 2549 aa2.25□□□□□ -2.05
USP53-205ENST00000509769 UTRNP46939 3433 aa2.25□□□□□ -2.05
USP53-205ENST00000509769 FN1P02751 2386 aaKnown RBP2.25□□□□□ -2.05
USP53-205ENST00000509769 HIVEP2P31629 2446 aa2.25□□□□□ -2.05
USP53-205ENST00000509769 SPG11Q96JI7 2443 aa2.25□□□□□ -2.05
USP53-205ENST00000509769 TRANK1O15050 2925 aa2.24□□□□□ -2.05
USP53-205ENST00000509769 FBN2P35556 2912 aa2.24□□□□□ -2.05
USP53-205ENST00000509769 USF3Q68DE3 2245 aa2.24□□□□□ -2.05
USP53-205ENST00000509769 C20orf166-AS1Q96NR2 134 aa2.24□□□□□ -2.05
USP53-205ENST00000509769 LRP4O75096 1905 aa2.24□□□□□ -2.05
USP53-205ENST00000509769 HTTP42858 3142 aa2.24□□□□□ -2.05
USP53-205ENST00000509769 POLQO75417 2590 aa2.24□□□□□ -2.05
USP53-205ENST00000509769 A0A0D9SG42 100 aa2.24□□□□□ -2.05
USP53-205ENST00000509769 CADP27708 2225 aa2.24□□□□□ -2.05
USP53-205ENST00000509769 CHD9Q3L8U1 2897 aa2.24□□□□□ -2.05
USP53-205ENST00000509769 HIVEP3Q5T1R4 2406 aa2.24□□□□□ -2.05
USP53-205ENST00000509769 A0A1W2PPR1 153 aa2.23□□□□□ -2.05
USP53-205ENST00000509769 RTL8CO15255 209 aa2.23□□□□□ -2.05
USP53-205ENST00000509769 SPRR1AP35321 89 aa2.23□□□□□ -2.05
USP53-205ENST00000509769 PCNX3Q9H6A9 2034 aa2.23□□□□□ -2.05
USP53-205ENST00000509769 MAPK1IP1LQ8NDC0 245 aa2.23□□□□□ -2.05
USP53-205ENST00000509769 LINC00472Q9H8W2 130 aa2.23□□□□□ -2.05
USP53-205ENST00000509769 FREM1Q5H8C1 2179 aa2.23□□□□□ -2.05
USP53-205ENST00000509769 S4R3F8 94 aa2.22□□□□□ -2.05
USP53-205ENST00000509769 NBDYA0A0U1RRE5 68 aa2.22□□□□□ -2.05
USP53-205ENST00000509769 A0A1W2PNN7 141 aa2.22□□□□□ -2.05
USP53-205ENST00000509769 NAV3Q8IVL0 2385 aa2.22□□□□□ -2.05
USP53-205ENST00000509769 PIEZO2Q9H5I5 2752 aa2.22□□□□□ -2.05
USP53-205ENST00000509769 CSPG4Q6UVK1 2322 aa2.22□□□□□ -2.05
USP53-205ENST00000509769 PANO1I0J062 215 aa2.22□□□□□ -2.05
USP53-205ENST00000509769 M0QZ58 72 aa2.22□□□□□ -2.05
USP53-205ENST00000509769 CYSTM1Q9H1C7 97 aa2.22□□□□□ -2.05
USP53-205ENST00000509769 COL6A3P12111 3177 aa2.22□□□□□ -2.05
USP53-205ENST00000509769 Q5W150 140 aa2.22□□□□□ -2.05
USP53-205ENST00000509769 PLXNB1O43157 2135 aa2.21□□□□□ -2.06
USP53-205ENST00000509769 PSORS1C2Q9UIG4 136 aa2.21□□□□□ -2.06
USP53-205ENST00000509769 A0A0G2JQZ4 141 aa2.21□□□□□ -2.06
USP53-205ENST00000509769 TENM4Q6N022 2769 aa2.21□□□□□ -2.06
Retrieved 100 of 20,778 RNA–protein pairs in 95 ms