RNA–Protein interactions for RNA: ENST00000508465.5

NUP54-206, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-206ENST00000508465 IGLV7-46A0A075B6I9 117 aa2.72□□□□□ -1.97
NUP54-206ENST00000508465 HSBP1O75506 76 aa2.72□□□□□ -1.97
NUP54-206ENST00000508465 Q8NDZ9 215 aa2.72□□□□□ -1.97
NUP54-206ENST00000508465 DIRC1Q969H9 104 aa2.72□□□□□ -1.97
NUP54-206ENST00000508465 PMCHL2Q9BQD1 86 aa2.72□□□□□ -1.97
NUP54-206ENST00000508465 SND1-IT1Q9HBX3 110 aa2.72□□□□□ -1.97
NUP54-206ENST00000508465 TMEM223A0PJW6 202 aa2.71□□□□□ -1.98
NUP54-206ENST00000508465 H0Y9J4 135 aa2.71□□□□□ -1.98
NUP54-206ENST00000508465 CXCL5P42830 114 aa2.71□□□□□ -1.98
NUP54-206ENST00000508465 LINC00158P58513 81 aa2.71□□□□□ -1.98
NUP54-206ENST00000508465 MRPL55Q7Z7F7 128 aaKnown RBP2.71□□□□□ -1.98
NUP54-206ENST00000508465 NKAPP1Q8N9T2 125 aa2.71□□□□□ -1.98
NUP54-206ENST00000508465 Q8NBF4 154 aa2.71□□□□□ -1.98
NUP54-206ENST00000508465 ANAPC11Q9NYG5 84 aa2.71□□□□□ -1.98
NUP54-206ENST00000508465 ERG28Q9UKR5 140 aa2.71□□□□□ -1.98
NUP54-206ENST00000508465 UBR4Q5T4S7 5183 aa2.7□□□□□ -1.98
NUP54-206ENST00000508465 IGKV2-28A0A075B6P5 120 aa2.7□□□□□ -1.98
NUP54-206ENST00000508465 TRAV12-1A0A0B4J245 112 aa2.7□□□□□ -1.98
NUP54-206ENST00000508465 TMEM238C9JI98 176 aa2.7□□□□□ -1.98
NUP54-206ENST00000508465 LEPROTL1O95214 131 aa2.7□□□□□ -1.98
NUP54-206ENST00000508465 IGKV2D-28P01615 120 aa2.7□□□□□ -1.98
NUP54-206ENST00000508465 SMIM13P0DJ93 91 aa2.7□□□□□ -1.98
NUP54-206ENST00000508465 ZNF861PO60384 105 aa2.69□□□□□ -1.98
NUP54-206ENST00000508465 BCE1O60756 84 aa2.69□□□□□ -1.98
NUP54-206ENST00000508465 KRTAP1-4P0C5Y4 121 aa2.69□□□□□ -1.98
NUP54-206ENST00000508465 TSPEAR-AS2P59090 65 aa2.69□□□□□ -1.98
NUP54-206ENST00000508465 TP73-AS1Q9UF72 201 aa2.69□□□□□ -1.98
NUP54-206ENST00000508465 HSPB8Q9UJY1 196 aa2.69□□□□□ -1.98
NUP54-206ENST00000508465 LRP2P98164 4655 aa2.68□□□□□ -1.98
NUP54-206ENST00000508465 IGLV1-50A0A075B6I6 118 aa2.68□□□□□ -1.98
NUP54-206ENST00000508465 A0A1B0GWB2 263 aa2.68□□□□□ -1.98
NUP54-206ENST00000508465 HIST1H2BKO60814 126 aa2.68□□□□□ -1.98
NUP54-206ENST00000508465 DPM2O94777 84 aa2.68□□□□□ -1.98
NUP54-206ENST00000508465 TSPAN13O95857 204 aa2.68□□□□□ -1.98
NUP54-206ENST00000508465 HIST1H2BJP06899 126 aa2.68□□□□□ -1.98
NUP54-206ENST00000508465 HIST1H2BOP23527 126 aa2.68□□□□□ -1.98
NUP54-206ENST00000508465 HIST1H2BBP33778 126 aa2.68□□□□□ -1.98
NUP54-206ENST00000508465 UBE2AP49459 152 aa2.68□□□□□ -1.98
NUP54-206ENST00000508465 HIST1H2BDP58876 126 aa2.68□□□□□ -1.98
NUP54-206ENST00000508465 HIST1H2BCP62807 126 aa2.68□□□□□ -1.98
NUP54-206ENST00000508465 COX17Q14061 63 aa2.68□□□□□ -1.98
NUP54-206ENST00000508465 HIST2H2BEQ16778 126 aa2.68□□□□□ -1.98
NUP54-206ENST00000508465 MEIG1Q5JSS6 88 aa2.68□□□□□ -1.98
NUP54-206ENST00000508465 HIST2H2BFQ5QNW6 126 aaPredicted RBP2.68□□□□□ -1.98
NUP54-206ENST00000508465 BOD1L2Q8IYS8 172 aa2.68□□□□□ -1.98
NUP54-206ENST00000508465 MIR7-3HGQ8N6C7 128 aa2.68□□□□□ -1.98
NUP54-206ENST00000508465 DAND5Q8N907 189 aa2.68□□□□□ -1.98
NUP54-206ENST00000508465 HIST1H2BHQ93079 126 aa2.68□□□□□ -1.98
NUP54-206ENST00000508465 HIST1H2BNQ99877 126 aa2.68□□□□□ -1.98
NUP54-206ENST00000508465 HIST1H2BMQ99879 126 aa2.68□□□□□ -1.98
NUP54-206ENST00000508465 NDUFA12Q9UI09 145 aa2.68□□□□□ -1.98
NUP54-206ENST00000508465 MYMXA0A1B0GTQ4 84 aa2.67□□□□□ -1.98
NUP54-206ENST00000508465 J3QQQ9 107 aa2.67□□□□□ -1.98
NUP54-206ENST00000508465 M0R378 163 aa2.67□□□□□ -1.98
NUP54-206ENST00000508465 NCR3O14931 201 aa2.67□□□□□ -1.98
NUP54-206ENST00000508465 LEPROTO15243 131 aa2.67□□□□□ -1.98
NUP54-206ENST00000508465 IGKCP01834 107 aa2.67□□□□□ -1.98
NUP54-206ENST00000508465 PLNP26678 52 aa2.67□□□□□ -1.98
NUP54-206ENST00000508465 RPL28P46779 137 aaKnown RBP2.67□□□□□ -1.98
NUP54-206ENST00000508465 PRLHP81277 87 aa2.67□□□□□ -1.98
NUP54-206ENST00000508465 FAM19A1Q7Z5A9 133 aa2.67□□□□□ -1.98
NUP54-206ENST00000508465 PLEKHB2Q96CS7 222 aa2.67□□□□□ -1.98
NUP54-206ENST00000508465 MAP1LC3CQ9BXW4 147 aa2.67□□□□□ -1.98
NUP54-206ENST00000508465 TMEM126AQ9H061 195 aa2.67□□□□□ -1.98
NUP54-206ENST00000508465 HSBP1L1C9JCN9 74 aa2.66□□□□□ -1.98
NUP54-206ENST00000508465 SYS1-DBNDD2H3BUS1 97 aa2.66□□□□□ -1.98
NUP54-206ENST00000508465 KRTAP13-1Q8IUC0 172 aa2.66□□□□□ -1.98
NUP54-206ENST00000508465 LPAP08519 4548 aa2.65□□□□□ -1.98
NUP54-206ENST00000508465 C3orf79P0CE67 100 aa2.65□□□□□ -1.99
NUP54-206ENST00000508465 LGALS3P17931 250 aaKnown RBP2.65□□□□□ -1.99
NUP54-206ENST00000508465 KRTDAPP60985 99 aa2.65□□□□□ -1.99
NUP54-206ENST00000508465 HERVK_113P61574 105 aa2.65□□□□□ -1.99
NUP54-206ENST00000508465 NPC2P61916 151 aa2.65□□□□□ -1.99
NUP54-206ENST00000508465 KRTAP13-2Q52LG2 175 aa2.65□□□□□ -1.99
NUP54-206ENST00000508465 SFTA2Q6UW10 78 aa2.65□□□□□ -1.99
NUP54-206ENST00000508465 HIGD2AQ9BW72 106 aa2.65□□□□□ -1.99
NUP54-206ENST00000508465 TTTY13Q9BZ97 58 aa2.65□□□□□ -1.99
NUP54-206ENST00000508465 DHRS4-AS1Q9P1J3 65 aa2.65□□□□□ -1.99
NUP54-206ENST00000508465 IGKV2D-26A0A0A0MRZ7 120 aa2.64□□□□□ -1.99
NUP54-206ENST00000508465 A0A0J9YXY3 114 aa2.64□□□□□ -1.99
NUP54-206ENST00000508465 TRBV10-3A0A0K0K1G6 114 aa2.64□□□□□ -1.99
NUP54-206ENST00000508465 LINC00587B1AMM8 73 aa2.64□□□□□ -1.99
NUP54-206ENST00000508465 CRYGAP11844 174 aa2.64□□□□□ -1.99
NUP54-206ENST00000508465 PRR4Q16378 134 aa2.64□□□□□ -1.99
NUP54-206ENST00000508465 LINC01545Q5VT33 79 aa2.64□□□□□ -1.99
NUP54-206ENST00000508465 SOSTDC1Q6X4U4 206 aa2.64□□□□□ -1.99
NUP54-206ENST00000508465 ATOH7Q8N100 152 aa2.64□□□□□ -1.99
NUP54-206ENST00000508465 TYMSOSQ8TAI1 123 aa2.64□□□□□ -1.99
NUP54-206ENST00000508465 SMCR5Q8TEV8 140 aa2.64□□□□□ -1.99
NUP54-206ENST00000508465 RNF213Q63HN8 5207 aa2.64□□□□□ -1.99
NUP54-206ENST00000508465 ETDCA0A1B0GVM5 59 aa2.63□□□□□ -1.99
NUP54-206ENST00000508465 KRTAP5-8O75690 187 aa2.63□□□□□ -1.99
NUP54-206ENST00000508465 ERC2-IT1O76042 136 aa2.63□□□□□ -1.99
NUP54-206ENST00000508465 C3orf22Q8N5N4 141 aa2.63□□□□□ -1.99
NUP54-206ENST00000508465 KCNQ1DNQ9H478 68 aa2.63□□□□□ -1.99
NUP54-206ENST00000508465 ZNF815PA8K554 130 aa2.62□□□□□ -1.99
NUP54-206ENST00000508465 KRTAP4-16G5E9R7 235 aaPredicted RBP2.62□□□□□ -1.99
NUP54-206ENST00000508465 DDTP30046 118 aa2.62□□□□□ -1.99
NUP54-206ENST00000508465 NMUP48645 174 aa2.62□□□□□ -1.99
NUP54-206ENST00000508465 COA6Q5JTJ3 125 aaKnown RBP2.62□□□□□ -1.99
Retrieved 100 of 20,778 RNA–protein pairs in 56.6 ms