RNA–Protein interactions for RNA: ENST00000508290.5

SFXN1-209, Transcript of sideroflexin 1, humanhuman

TSL 4

Gene SFXN1, Length 592 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFXN1-209ENST00000508290 Q6ZRX8 168 aa11.65□□□□□ -0.54
SFXN1-209ENST00000508290 LINC00304Q8N9R0 145 aa11.65□□□□□ -0.54
SFXN1-209ENST00000508290 S100A6P06703 90 aa11.64□□□□□ -0.55
SFXN1-209ENST00000508290 HINT1P49773 126 aaPredicted RBP11.64□□□□□ -0.55
SFXN1-209ENST00000508290 LINC00518Q8N0U6 118 aa11.64□□□□□ -0.55
SFXN1-209ENST00000508290 SMCR5Q8TEV8 140 aa11.64□□□□□ -0.55
SFXN1-209ENST00000508290 PPDPFQ9H3Y8 114 aa11.64□□□□□ -0.55
SFXN1-209ENST00000508290 LRP2P98164 4655 aa11.63□□□□□ -0.55
SFXN1-209ENST00000508290 Q6ZVH6 145 aa11.63□□□□□ -0.55
SFXN1-209ENST00000508290 HIST3H2BBQ8N257 126 aa11.63□□□□□ -0.55
SFXN1-209ENST00000508290 ZNF73O43830 326 aaPredicted RBP11.62□□□□□ -0.55
SFXN1-209ENST00000508290 EIF4EBP3O60516 100 aaPredicted RBP11.62□□□□□ -0.55
SFXN1-209ENST00000508290 SPANXDQ9BXN6 97 aa11.62□□□□□ -0.55
SFXN1-209ENST00000508290 HIST1H2BLQ99880 126 aa11.61□□□□□ -0.55
SFXN1-209ENST00000508290 TSPAN13O95857 204 aa11.6□□□□□ -0.55
SFXN1-209ENST00000508290 IFITM1P13164 125 aa11.6□□□□□ -0.55
SFXN1-209ENST00000508290 PRR4Q16378 134 aa11.6□□□□□ -0.55
SFXN1-209ENST00000508290 LINC00483Q53H64 154 aa11.6□□□□□ -0.55
SFXN1-209ENST00000508290 ANKRD39Q53RE8 183 aa11.6□□□□□ -0.55
SFXN1-209ENST00000508290 SPAG11AQ6PDA7 123 aa11.6□□□□□ -0.55
SFXN1-209ENST00000508290 TTTY13Q9BZ97 58 aa11.6□□□□□ -0.55
SFXN1-209ENST00000508290 C5orf52A6NGY3 159 aa11.59□□□□□ -0.55
SFXN1-209ENST00000508290 ATOH7Q8N100 152 aa11.59□□□□□ -0.55
SFXN1-209ENST00000508290 HSBP1L1C9JCN9 74 aa11.57□□□□□ -0.56
SFXN1-209ENST00000508290 OR13C6PQ8NH95 151 aa11.57□□□□□ -0.56
SFXN1-209ENST00000508290 Q9BRP9 147 aa11.56□□□□□ -0.56
SFXN1-209ENST00000508290 C3orf22Q8N5N4 141 aa11.55□□□□□ -0.56
SFXN1-209ENST00000508290 C4orf48Q5BLP8 95 aa11.54□□□□□ -0.56
SFXN1-209ENST00000508290 GAGE2AQ6NT46 116 aa11.53□□□□□ -0.56
SFXN1-209ENST00000508290 ERC2-IT1O76042 136 aa11.52□□□□□ -0.57
SFXN1-209ENST00000508290 PCP2Q8IVA1 136 aa11.52□□□□□ -0.57
SFXN1-209ENST00000508290 DHRS4-AS1Q9P1J3 65 aa11.52□□□□□ -0.57
SFXN1-209ENST00000508290 SSBP3-AS1Q7Z2R9 100 aa11.49□□□□□ -0.57
SFXN1-209ENST00000508290 TRBV7-6A0A0J9YX20 115 aa11.48□□□□□ -0.57
SFXN1-209ENST00000508290 SPINK1P00995 79 aa11.47□□□□□ -0.57
SFXN1-209ENST00000508290 ELOF1P60002 83 aaKnown RBP11.47□□□□□ -0.57
SFXN1-209ENST00000508290 Q8NBF4 154 aa11.47□□□□□ -0.57
SFXN1-209ENST00000508290 COX7BP24311 80 aa11.46□□□□□ -0.57
SFXN1-209ENST00000508290 SLC25A34Q6PIV7 304 aa11.46□□□□□ -0.57
SFXN1-209ENST00000508290 MUSTN1Q8IVN3 82 aa11.46□□□□□ -0.57
SFXN1-209ENST00000508290 TRAV13-2A0A0B4J235 113 aa11.45□□□□□ -0.58
SFXN1-209ENST00000508290 C6orf99Q4VX62 202 aa11.45□□□□□ -0.58
SFXN1-209ENST00000508290 A6NDN8 102 aa11.44□□□□□ -0.58
SFXN1-209ENST00000508290 RPS29P62273 56 aaKnown RBP11.44□□□□□ -0.58
SFXN1-209ENST00000508290 SCGB1D1O95968 90 aa11.43□□□□□ -0.58
SFXN1-209ENST00000508290 MOBPQ13875 183 aa11.43□□□□□ -0.58
SFXN1-209ENST00000508290 IGLV9-49A0A0B4J1Y8 123 aa11.42□□□□□ -0.58
SFXN1-209ENST00000508290 A0A1B0GWB2 263 aa11.42□□□□□ -0.58
SFXN1-209ENST00000508290 A4D1N5 150 aa11.42□□□□□ -0.58
SFXN1-209ENST00000508290 SPRR1BP22528 89 aa11.42□□□□□ -0.58
SFXN1-209ENST00000508290 FP248Q71RG6 208 aaPredicted RBP11.41□□□□□ -0.58
SFXN1-209ENST00000508290 TPRXLQ17RH7 258 aa11.39□□□□□ -0.59
SFXN1-209ENST00000508290 RETNLBQ9BQ08 111 aa11.39□□□□□ -0.59
SFXN1-209ENST00000508290 LPAP08519 4548 aa11.39□□□□□ -0.59
SFXN1-209ENST00000508290 IGLV7-46A0A075B6I9 117 aa11.38□□□□□ -0.59
SFXN1-209ENST00000508290 C9orf153Q5TBE3 101 aa11.38□□□□□ -0.59
SFXN1-209ENST00000508290 ST20-AS1Q8NBB2 130 aa11.38□□□□□ -0.59
SFXN1-209ENST00000508290 NHP2Q9NX24 153 aaKnown RBP11.38□□□□□ -0.59
SFXN1-209ENST00000508290 LAMTOR3Q9UHA4 124 aa11.36□□□□□ -0.59
SFXN1-209ENST00000508290 DLEU1O43261 78 aa11.34□□□□□ -0.59
SFXN1-209ENST00000508290 COX8AP10176 69 aa11.34□□□□□ -0.59
SFXN1-209ENST00000508290 RNF213Q63HN8 5207 aa11.33□□□□□ -0.59
SFXN1-209ENST00000508290 VAMP3Q15836 100 aa11.33□□□□□ -0.6
SFXN1-209ENST00000508290 TAL2Q16559 108 aa11.33□□□□□ -0.6
SFXN1-209ENST00000508290 TEX49A0A1B0GTD5 131 aa11.32□□□□□ -0.6
SFXN1-209ENST00000508290 SMIM11BQ8TCY0 68 aa11.32□□□□□ -0.6
SFXN1-209ENST00000508290 SLC25A20O43772 301 aa11.31□□□□□ -0.6
SFXN1-209ENST00000508290 CDIP1Q9H305 208 aa11.31□□□□□ -0.6
SFXN1-209ENST00000508290 HIST1H4GQ99525 98 aa11.3□□□□□ -0.6
SFXN1-209ENST00000508290 IGLV5-48A0A075B6I7 105 aa11.28□□□□□ -0.6
SFXN1-209ENST00000508290 Q8N377 158 aa11.28□□□□□ -0.6
SFXN1-209ENST00000508290 LIMD2Q9BT23 127 aa11.26□□□□□ -0.61
SFXN1-209ENST00000508290 VAMP8Q9BV40 100 aa11.26□□□□□ -0.61
SFXN1-209ENST00000508290 DEFB105AQ8NG35 78 aa11.25□□□□□ -0.61
SFXN1-209ENST00000508290 HIGD1BQ9P298 99 aa11.25□□□□□ -0.61
SFXN1-209ENST00000508290 CD164Q04900 197 aa11.24□□□□□ -0.61
SFXN1-209ENST00000508290 SPATA45Q537H7 98 aa11.24□□□□□ -0.61
SFXN1-209ENST00000508290 PRO1933Q9H354 126 aa11.24□□□□□ -0.61
SFXN1-209ENST00000508290 PAM16Q9Y3D7 125 aa11.23□□□□□ -0.61
SFXN1-209ENST00000508290 Q1RN00 199 aa11.22□□□□□ -0.61
SFXN1-209ENST00000508290 BVES-AS1Q5T3Y7 98 aa11.21□□□□□ -0.61
SFXN1-209ENST00000508290 LINC01547P58512 204 aaPredicted RBP11.2□□□□□ -0.62
SFXN1-209ENST00000508290 LINC00575Q6W349 94 aa11.2□□□□□ -0.62
SFXN1-209ENST00000508290 C14orf144Q96I85 54 aa11.2□□□□□ -0.62
SFXN1-209ENST00000508290 KRTAP13-3Q3SY46 172 aa11.19□□□□□ -0.62
SFXN1-209ENST00000508290 SMIM29Q86T20 159 aa11.19□□□□□ -0.62
SFXN1-209ENST00000508290 A0A0U1RQV1 116 aa11.18□□□□□ -0.62
SFXN1-209ENST00000508290 hADV29S1A0JD25 119 aa11.17□□□□□ -0.62
SFXN1-209ENST00000508290 H7C2G1 150 aa11.16□□□□□ -0.62
SFXN1-209ENST00000508290 C12orf57Q99622 126 aa11.16□□□□□ -0.62
SFXN1-209ENST00000508290 F8WEM9 126 aa11.15□□□□□ -0.62
SFXN1-209ENST00000508290 RAB37Q96AX2 223 aa11.15□□□□□ -0.62
SFXN1-209ENST00000508290 A0A0B4J2C4 111 aa11.14□□□□□ -0.63
SFXN1-209ENST00000508290 TMEM238LA0A1B0GVL6 79 aa11.14□□□□□ -0.63
SFXN1-209ENST00000508290 A6NJY4 79 aa11.14□□□□□ -0.63
SFXN1-209ENST00000508290 Q5XG85 94 aa11.14□□□□□ -0.63
SFXN1-209ENST00000508290 PPDPFLQ8WWR9 84 aa11.14□□□□□ -0.63
SFXN1-209ENST00000508290 SNCGO76070 127 aa11.13□□□□□ -0.63
SFXN1-209ENST00000508290 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP11.13□□□□□ -0.63
SFXN1-209ENST00000508290 CFC1BP0CG36 223 aa11.12□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 84.2 ms