RNA–Protein interactions for RNA: ENST00000506941.1

NPHP4-210, Transcript of nephrocystin 4, humanhuman

TSL 4

Gene NPHP4, Length 570 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-210ENST00000506941 HIGD2AQ9BW72 106 aa10.83□□□□□ -0.68
NPHP4-210ENST00000506941 PAM16Q9Y3D7 125 aa10.83□□□□□ -0.68
NPHP4-210ENST00000506941 TRAV23DV6A0A075B6W5 121 aa10.82□□□□□ -0.68
NPHP4-210ENST00000506941 S100A12P80511 92 aa10.82□□□□□ -0.68
NPHP4-210ENST00000506941 B5MCH6 92 aa10.81□□□□□ -0.68
NPHP4-210ENST00000506941 SPATA45Q537H7 98 aa10.81□□□□□ -0.68
NPHP4-210ENST00000506941 OR13C6PQ8NH95 151 aa10.81□□□□□ -0.68
NPHP4-210ENST00000506941 COPS9Q8WXC6 57 aa10.81□□□□□ -0.68
NPHP4-210ENST00000506941 VAMP8Q9BV40 100 aa10.81□□□□□ -0.68
NPHP4-210ENST00000506941 ANAPC11Q9NYG5 84 aa10.81□□□□□ -0.68
NPHP4-210ENST00000506941 PYY3Q5JQD4 70 aa10.8□□□□□ -0.68
NPHP4-210ENST00000506941 A0A087X002 238 aa10.79□□□□□ -0.68
NPHP4-210ENST00000506941 ZNF73O43830 326 aaPredicted RBP10.79□□□□□ -0.68
NPHP4-210ENST00000506941 LINC00518Q8N0U6 118 aa10.79□□□□□ -0.68
NPHP4-210ENST00000506941 SMCR5Q8TEV8 140 aa10.79□□□□□ -0.68
NPHP4-210ENST00000506941 C14orf144Q96I85 54 aa10.79□□□□□ -0.68
NPHP4-210ENST00000506941 DLEU1O43261 78 aa10.78□□□□□ -0.68
NPHP4-210ENST00000506941 Q6ZRX8 168 aa10.78□□□□□ -0.68
NPHP4-210ENST00000506941 HMCN2Q8NDA2 5059 aa10.77□□□□□ -0.68
NPHP4-210ENST00000506941 Q9BRP9 147 aa10.77□□□□□ -0.69
NPHP4-210ENST00000506941 RPL13AP40429 203 aaKnown RBP10.75□□□□□ -0.69
NPHP4-210ENST00000506941 SPRR4Q96PI1 79 aa10.75□□□□□ -0.69
NPHP4-210ENST00000506941 ERC2-IT1O76042 136 aa10.74□□□□□ -0.69
NPHP4-210ENST00000506941 FAM229BQ4G0N7 80 aa10.74□□□□□ -0.69
NPHP4-210ENST00000506941 KRTAP13-2Q52LG2 175 aa10.74□□□□□ -0.69
NPHP4-210ENST00000506941 CBY1Q9Y3M2 126 aa10.74□□□□□ -0.69
NPHP4-210ENST00000506941 CRYGAP11844 174 aa10.73□□□□□ -0.69
NPHP4-210ENST00000506941 A4D1N5 150 aa10.72□□□□□ -0.69
NPHP4-210ENST00000506941 SLC25A34Q6PIV7 304 aa10.72□□□□□ -0.69
NPHP4-210ENST00000506941 C2orf91Q6ZV80 131 aa10.72□□□□□ -0.69
NPHP4-210ENST00000506941 HIST1H4GQ99525 98 aa10.72□□□□□ -0.69
NPHP4-210ENST00000506941 A6NDN8 102 aa10.71□□□□□ -0.69
NPHP4-210ENST00000506941 C6orf99Q4VX62 202 aa10.7□□□□□ -0.7
NPHP4-210ENST00000506941 HIGD1BQ9P298 99 aa10.7□□□□□ -0.7
NPHP4-210ENST00000506941 ZNF706Q9Y5V0 76 aaPredicted RBP10.7□□□□□ -0.7
NPHP4-210ENST00000506941 TRAV13-2A0A0B4J235 113 aa10.68□□□□□ -0.7
NPHP4-210ENST00000506941 TYMSOSQ8TAI1 123 aa10.68□□□□□ -0.7
NPHP4-210ENST00000506941 HINT1P49773 126 aaPredicted RBP10.67□□□□□ -0.7
NPHP4-210ENST00000506941 ELOF1P60002 83 aaKnown RBP10.67□□□□□ -0.7
NPHP4-210ENST00000506941 C3orf22Q8N5N4 141 aa10.67□□□□□ -0.7
NPHP4-210ENST00000506941 LINC00483Q53H64 154 aa10.66□□□□□ -0.7
NPHP4-210ENST00000506941 C12orf57Q99622 126 aa10.66□□□□□ -0.7
NPHP4-210ENST00000506941 COX7BP24311 80 aa10.65□□□□□ -0.7
NPHP4-210ENST00000506941 SMIM11BQ8TCY0 68 aa10.65□□□□□ -0.7
NPHP4-210ENST00000506941 TRBV7-6A0A0J9YX20 115 aa10.64□□□□□ -0.71
NPHP4-210ENST00000506941 GAGE2AQ6NT46 116 aa10.64□□□□□ -0.71
NPHP4-210ENST00000506941 ST20-AS1Q8NBB2 130 aa10.63□□□□□ -0.71
NPHP4-210ENST00000506941 DHRS4-AS1Q9P1J3 65 aa10.62□□□□□ -0.71
NPHP4-210ENST00000506941 A0A1B0GWB2 263 aa10.6□□□□□ -0.71
NPHP4-210ENST00000506941 TAL2Q16559 108 aa10.59□□□□□ -0.71
NPHP4-210ENST00000506941 CFC1BP0CG36 223 aa10.58□□□□□ -0.72
NPHP4-210ENST00000506941 CFC1P0CG37 223 aa10.58□□□□□ -0.72
NPHP4-210ENST00000506941 CEND1Q8N111 149 aa10.58□□□□□ -0.72
NPHP4-210ENST00000506941 LINC00304Q8N9R0 145 aa10.57□□□□□ -0.72
NPHP4-210ENST00000506941 TSPAN13O95857 204 aa10.56□□□□□ -0.72
NPHP4-210ENST00000506941 FXYD2P54710 66 aa10.55□□□□□ -0.72
NPHP4-210ENST00000506941 IGLV9-49A0A0B4J1Y8 123 aa10.54□□□□□ -0.72
NPHP4-210ENST00000506941 A0A0B4J2C4 111 aa10.54□□□□□ -0.72
NPHP4-210ENST00000506941 UQCR10Q9UDW1 63 aa10.54□□□□□ -0.72
NPHP4-210ENST00000506941 SPRR1BP22528 89 aa10.53□□□□□ -0.72
NPHP4-210ENST00000506941 MOBPQ13875 183 aa10.53□□□□□ -0.72
NPHP4-210ENST00000506941 HSD52Q0P140 79 aa10.52□□□□□ -0.73
NPHP4-210ENST00000506941 Q8NBF4 154 aa10.52□□□□□ -0.73
NPHP4-210ENST00000506941 RAB37Q96AX2 223 aa10.52□□□□□ -0.73
NPHP4-210ENST00000506941 LRP2P98164 4655 aa10.51□□□□□ -0.73
NPHP4-210ENST00000506941 H7C2G1 150 aa10.51□□□□□ -0.73
NPHP4-210ENST00000506941 LINC01547P58512 204 aaPredicted RBP10.5□□□□□ -0.73
NPHP4-210ENST00000506941 VAMP3Q15836 100 aa10.5□□□□□ -0.73
NPHP4-210ENST00000506941 LINC00575Q6W349 94 aa10.5□□□□□ -0.73
NPHP4-210ENST00000506941 TMEM238LA0A1B0GVL6 79 aa10.49□□□□□ -0.73
NPHP4-210ENST00000506941 A6NJY4 79 aa10.49□□□□□ -0.73
NPHP4-210ENST00000506941 SMIM6P0DI80 62 aa10.49□□□□□ -0.73
NPHP4-210ENST00000506941 DEFB105AQ8NG35 78 aa10.49□□□□□ -0.73
NPHP4-210ENST00000506941 PRO1933Q9H354 126 aa10.49□□□□□ -0.73
NPHP4-210ENST00000506941 LPAP08519 4548 aa10.48□□□□□ -0.73
NPHP4-210ENST00000506941 LOC105371267A0A1B0GV96 52 aa10.48□□□□□ -0.73
NPHP4-210ENST00000506941 NHP2Q9NX24 153 aaKnown RBP10.48□□□□□ -0.73
NPHP4-210ENST00000506941 IGLV5-48A0A075B6I7 105 aa10.47□□□□□ -0.73
NPHP4-210ENST00000506941 TEX49A0A1B0GTD5 131 aa10.46□□□□□ -0.73
NPHP4-210ENST00000506941 BVES-AS1Q5T3Y7 98 aa10.46□□□□□ -0.73
NPHP4-210ENST00000506941 C9orf153Q5TBE3 101 aa10.46□□□□□ -0.73
NPHP4-210ENST00000506941 SSBP3-AS1Q7Z2R9 100 aa10.46□□□□□ -0.73
NPHP4-210ENST00000506941 PRO1854Q9UHT4 67 aa10.46□□□□□ -0.73
NPHP4-210ENST00000506941 SLC25A20O43772 301 aa10.45□□□□□ -0.74
NPHP4-210ENST00000506941 Q1RN00 199 aa10.44□□□□□ -0.74
NPHP4-210ENST00000506941 SPAG11AQ6PDA7 123 aa10.44□□□□□ -0.74
NPHP4-210ENST00000506941 SMIM29Q86T20 159 aa10.44□□□□□ -0.74
NPHP4-210ENST00000506941 UBR4Q5T4S7 5183 aa10.44□□□□□ -0.74
NPHP4-210ENST00000506941 hADV29S1A0JD25 119 aa10.43□□□□□ -0.74
NPHP4-210ENST00000506941 K7ERJ3 54 aa10.43□□□□□ -0.74
NPHP4-210ENST00000506941 CTAG1AP78358 180 aa10.43□□□□□ -0.74
NPHP4-210ENST00000506941 Q8N377 158 aa10.43□□□□□ -0.74
NPHP4-210ENST00000506941 LAMTOR3Q9UHA4 124 aa10.43□□□□□ -0.74
NPHP4-210ENST00000506941 Q6ZQY7 126 aa10.42□□□□□ -0.74
NPHP4-210ENST00000506941 RETNLBQ9BQ08 111 aa10.42□□□□□ -0.74
NPHP4-210ENST00000506941 PRR4Q16378 134 aa10.41□□□□□ -0.74
NPHP4-210ENST00000506941 C4orf48Q5BLP8 95 aa10.41□□□□□ -0.74
NPHP4-210ENST00000506941 FAM218AQ96MZ4 157 aa10.39□□□□□ -0.75
NPHP4-210ENST00000506941 SPINK1P00995 79 aa10.38□□□□□ -0.75
NPHP4-210ENST00000506941 TRIAP1O43715 76 aa10.37□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms