RNA–Protein interactions for RNA: ENST00000494612.1

SMC4-224, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 3

Gene SMC4, Length 622 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-224ENST00000494612 PAIP2BQ9ULR5 123 aaKnown RBP1.43□□□□□ -2.18
SMC4-224ENST00000494612 LSM2Q9Y333 95 aaKnown RBP1.43□□□□□ -2.18
SMC4-224ENST00000494612 TRAV16A0A0A6YYK6 109 aaPredicted RBP1.42□□□□□ -2.18
SMC4-224ENST00000494612 TRBV7-6A0A0J9YX20 115 aa1.42□□□□□ -2.18
SMC4-224ENST00000494612 C3orf85A0A1B0GTC6 90 aa1.42□□□□□ -2.18
SMC4-224ENST00000494612 SPINK4O60575 86 aa1.42□□□□□ -2.18
SMC4-224ENST00000494612 SLC25A5P05141 298 aaKnown RBP1.42□□□□□ -2.18
SMC4-224ENST00000494612 SFTA3P0C7M3 94 aa1.42□□□□□ -2.18
SMC4-224ENST00000494612 FABP4P15090 132 aa1.42□□□□□ -2.18
SMC4-224ENST00000494612 NMSQ5H8A3 153 aa1.42□□□□□ -2.18
SMC4-224ENST00000494612 ZNF431Q8TF32 576 aaPredicted RBP1.42□□□□□ -2.18
SMC4-224ENST00000494612 DIRC1Q969H9 104 aa1.42□□□□□ -2.18
SMC4-224ENST00000494612 DPH3Q96FX2 82 aa1.42□□□□□ -2.18
SMC4-224ENST00000494612 TRGV9Q99603 122 aa1.42□□□□□ -2.18
SMC4-224ENST00000494612 COPZ2Q9P299 210 aa1.42□□□□□ -2.18
SMC4-224ENST00000494612 CACFD1Q9UGQ2 172 aa1.42□□□□□ -2.18
SMC4-224ENST00000494612 HSPB8Q9UJY1 196 aa1.42□□□□□ -2.18
SMC4-224ENST00000494612 SNURFQ9Y675 71 aa1.42□□□□□ -2.18
SMC4-224ENST00000494612 IL5P05113 134 aa1.41□□□□□ -2.18
SMC4-224ENST00000494612 LSM3P62310 102 aaKnown RBP1.41□□□□□ -2.18
SMC4-224ENST00000494612 CNBPP62633 177 aaKnown RBP1.41□□□□□ -2.18
SMC4-224ENST00000494612 FAM74A1Q5RGS3 127 aa1.41□□□□□ -2.18
SMC4-224ENST00000494612 TMEM14EPQ6UXP3 125 aa1.41□□□□□ -2.18
SMC4-224ENST00000494612 S100A16Q96FQ6 103 aaKnown RBP1.41□□□□□ -2.18
SMC4-224ENST00000494612 LINC01600Q96MT4 127 aa1.41□□□□□ -2.18
SMC4-224ENST00000494612 LOC107984156A0A0G2JMH3 177 aa1.4□□□□□ -2.19
SMC4-224ENST00000494612 SMIM31A0A1B0GVY4 71 aa1.4□□□□□ -2.19
SMC4-224ENST00000494612 TRACP01848 142 aa1.4□□□□□ -2.19
SMC4-224ENST00000494612 IAPPP10997 89 aa1.4□□□□□ -2.19
SMC4-224ENST00000494612 RNASE3P12724 160 aaKnown RBP1.4□□□□□ -2.19
SMC4-224ENST00000494612 RHOHQ15669 191 aa1.4□□□□□ -2.19
SMC4-224ENST00000494612 CYP2G1PQ6ZSU1 146 aa1.4□□□□□ -2.19
SMC4-224ENST00000494612 TEN1Q86WV5 123 aa1.4□□□□□ -2.19
SMC4-224ENST00000494612 SNX29P2Q8IUI4 249 aa1.4□□□□□ -2.19
SMC4-224ENST00000494612 ARL17AQ8IVW1 177 aa1.4□□□□□ -2.19
SMC4-224ENST00000494612 Q8TAT8 98 aa1.4□□□□□ -2.19
SMC4-224ENST00000494612 ODF3Q96PU9 254 aa1.4□□□□□ -2.19
SMC4-224ENST00000494612 CDC42SE1Q9NRR8 79 aa1.4□□□□□ -2.19
SMC4-224ENST00000494612 C9orf170A2RU37 121 aa1.39□□□□□ -2.19
SMC4-224ENST00000494612 F8W1H4 67 aa1.39□□□□□ -2.19
SMC4-224ENST00000494612 HBDP02042 147 aa1.39□□□□□ -2.19
SMC4-224ENST00000494612 TCRAP04437 139 aa1.39□□□□□ -2.19
SMC4-224ENST00000494612 SPINK6Q6UWN8 80 aa1.39□□□□□ -2.19
SMC4-224ENST00000494612 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP1.39□□□□□ -2.19
SMC4-224ENST00000494612 CLEC2BQ92478 149 aa1.39□□□□□ -2.19
SMC4-224ENST00000494612 SMIM3Q9BZL3 60 aa1.39□□□□□ -2.19
SMC4-224ENST00000494612 NAA60Q9H7X0 242 aa1.39□□□□□ -2.19
SMC4-224ENST00000494612 ORMDL1Q9P0S3 153 aa1.39□□□□□ -2.19
SMC4-224ENST00000494612 A0A087WSZ3 146 aa1.38□□□□□ -2.19
SMC4-224ENST00000494612 IGKV2-40A0A087WW87 121 aaPredicted RBP1.38□□□□□ -2.19
SMC4-224ENST00000494612 A0A087WWC5 75 aa1.38□□□□□ -2.19
SMC4-224ENST00000494612 FAM25AB3EWG3 89 aa1.38□□□□□ -2.19
SMC4-224ENST00000494612 FAM25CB3EWG5 89 aa1.38□□□□□ -2.19
SMC4-224ENST00000494612 FAM25GB3EWG6 89 aa1.38□□□□□ -2.19
SMC4-224ENST00000494612 H3BQ15 152 aa1.38□□□□□ -2.19
SMC4-224ENST00000494612 M0R2P5 195 aa1.38□□□□□ -2.19
SMC4-224ENST00000494612 M0R3E3 92 aa1.38□□□□□ -2.19
SMC4-224ENST00000494612 UQCRQO14949 82 aa1.38□□□□□ -2.19
SMC4-224ENST00000494612 IGKV2D-40P01614 121 aaPredicted RBP1.38□□□□□ -2.19
SMC4-224ENST00000494612 CD3DP04234 171 aa1.38□□□□□ -2.19
SMC4-224ENST00000494612 NMBP08949 121 aa1.38□□□□□ -2.19
SMC4-224ENST00000494612 IGLC2P0DOY2 106 aa1.38□□□□□ -2.19
SMC4-224ENST00000494612 RRAS2P62070 204 aaPredicted RBP1.38□□□□□ -2.19
SMC4-224ENST00000494612 Q0VG73 95 aa1.38□□□□□ -2.19
SMC4-224ENST00000494612 C10orf113Q5VZT2 155 aa1.38□□□□□ -2.19
SMC4-224ENST00000494612 Q5XG85 94 aa1.38□□□□□ -2.19
SMC4-224ENST00000494612 CIB3Q96Q77 187 aaPredicted RBP1.38□□□□□ -2.19
SMC4-224ENST00000494612 MED9Q9NWA0 146 aa1.38□□□□□ -2.19
SMC4-224ENST00000494612 PIGBOS1A0A0B4J2F0 54 aa1.37□□□□□ -2.19
SMC4-224ENST00000494612 IGKV3D-7A0A0C4DH55 119 aa1.37□□□□□ -2.19
SMC4-224ENST00000494612 IGKV3OR2-268A0A0C4DH90 116 aa1.37□□□□□ -2.19
SMC4-224ENST00000494612 TRBV6-4A0A1B0GX49 114 aa1.37□□□□□ -2.19
SMC4-224ENST00000494612 TMEM262E9PQX1 116 aa1.37□□□□□ -2.19
SMC4-224ENST00000494612 J3QR89 54 aa1.37□□□□□ -2.19
SMC4-224ENST00000494612 DNAL4O96015 105 aa1.37□□□□□ -2.19
SMC4-224ENST00000494612 ANGP03950 147 aaKnown RBP1.37□□□□□ -2.19
SMC4-224ENST00000494612 MIR22HGQ0VDD5 57 aa1.37□□□□□ -2.19
SMC4-224ENST00000494612 CFAP126Q5VTH2 177 aa1.37□□□□□ -2.19
SMC4-224ENST00000494612 PFDN5Q99471 154 aa1.37□□□□□ -2.19
SMC4-224ENST00000494612 AGPAT4-IT1Q9H0P7 198 aa1.37□□□□□ -2.19
SMC4-224ENST00000494612 NPVFQ9HCQ7 196 aa1.37□□□□□ -2.19
SMC4-224ENST00000494612 PLAC8Q9NZF1 115 aa1.37□□□□□ -2.19
SMC4-224ENST00000494612 COMMD3Q9UBI1 195 aa1.37□□□□□ -2.19
SMC4-224ENST00000494612 TRAV21A0A0B4J279 112 aa1.36□□□□□ -2.19
SMC4-224ENST00000494612 H3BRM9 83 aa1.36□□□□□ -2.19
SMC4-224ENST00000494612 SSSCA1O60232 199 aa1.36□□□□□ -2.19
SMC4-224ENST00000494612 PYYP10082 97 aa1.36□□□□□ -2.19
SMC4-224ENST00000494612 CKS2P33552 79 aa1.36□□□□□ -2.19
SMC4-224ENST00000494612 COX6A2Q02221 97 aa1.36□□□□□ -2.19
SMC4-224ENST00000494612 NEDD8Q15843 81 aa1.36□□□□□ -2.19
SMC4-224ENST00000494612 CLPSL2Q6UWE3 100 aa1.36□□□□□ -2.19
SMC4-224ENST00000494612 ENHOQ6UWT2 76 aa1.36□□□□□ -2.19
SMC4-224ENST00000494612 CASC2Q6XLA1 102 aa1.36□□□□□ -2.19
SMC4-224ENST00000494612 MGST2Q99735 147 aa1.36□□□□□ -2.19
SMC4-224ENST00000494612 PSENENQ9NZ42 101 aa1.36□□□□□ -2.19
SMC4-224ENST00000494612 SCP2D1Q9UJQ7 156 aa1.36□□□□□ -2.19
SMC4-224ENST00000494612 SYNE2Q8WXH0 6885 aaKnown RBP1.35□□□□□ -2.19
SMC4-224ENST00000494612 RBAKDNA6NC62 111 aa1.35□□□□□ -2.19
SMC4-224ENST00000494612 F6UZH7 168 aa1.35□□□□□ -2.19
SMC4-224ENST00000494612 AKAIN1P0CW23 69 aa1.35□□□□□ -2.19
Retrieved 100 of 20,778 RNA–protein pairs in 44.7 ms