RNA–Protein interactions for RNA: ENST00000494090.6

COL27A1-207, Transcript of collagen type XXVII alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL27A1, Length 5,329 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL27A1-207ENST00000494090 ACANP16112 2415 aa12.6□□□□□ -0.39
COL27A1-207ENST00000494090 LINC00304Q8N9R0 145 aa12.59□□□□□ -0.39
COL27A1-207ENST00000494090 IGFL1Q6UW32 110 aa12.59□□□□□ -0.39
COL27A1-207ENST00000494090 KLKP1Q107X0 134 aa12.58□□□□□ -0.4
COL27A1-207ENST00000494090 C9orf129Q5T035 196 aaKnown RBP12.57□□□□□ -0.4
COL27A1-207ENST00000494090 Q8N377 158 aa12.57□□□□□ -0.4
COL27A1-207ENST00000494090 C9orf163Q8N9P6 203 aa12.57□□□□□ -0.4
COL27A1-207ENST00000494090 C8orf17Q9NRJ1 99 aa12.56□□□□□ -0.4
COL27A1-207ENST00000494090 A0A087WTM6 91 aa12.56□□□□□ -0.4
COL27A1-207ENST00000494090 PRR15Q8IV56 129 aa12.56□□□□□ -0.4
COL27A1-207ENST00000494090 KRTAP10-3P60369 221 aa12.54□□□□□ -0.4
COL27A1-207ENST00000494090 A0A1B0GVX0 72 aa12.52□□□□□ -0.4
COL27A1-207ENST00000494090 CYP4F30PQ9H0H9 118 aa12.52□□□□□ -0.41
COL27A1-207ENST00000494090 COX6B2Q6YFQ2 88 aa12.51□□□□□ -0.41
COL27A1-207ENST00000494090 LINC00336Q6ZUF6 198 aa12.51□□□□□ -0.41
COL27A1-207ENST00000494090 COA5Q86WW8 74 aa12.51□□□□□ -0.41
COL27A1-207ENST00000494090 LINC01600Q96MT4 127 aa12.51□□□□□ -0.41
COL27A1-207ENST00000494090 IGLV8-61A0A075B6I0 122 aa12.49□□□□□ -0.41
COL27A1-207ENST00000494090 DSCR10P59022 87 aa12.48□□□□□ -0.41
COL27A1-207ENST00000494090 UQCR11O14957 56 aa12.48□□□□□ -0.41
COL27A1-207ENST00000494090 ZNF575Q86XF7 245 aa12.47□□□□□ -0.41
COL27A1-207ENST00000494090 A8MUN3 132 aa12.45□□□□□ -0.42
COL27A1-207ENST00000494090 IGLV7-43P04211 117 aa12.44□□□□□ -0.42
COL27A1-207ENST00000494090 CNBPP62633 177 aaKnown RBP12.44□□□□□ -0.42
COL27A1-207ENST00000494090 H7BZZ5 65 aa12.43□□□□□ -0.42
COL27A1-207ENST00000494090 OBSCN-AS1Q96MR7 158 aa12.41□□□□□ -0.42
COL27A1-207ENST00000494090 APLNQ9ULZ1 77 aa12.4□□□□□ -0.42
COL27A1-207ENST00000494090 DNAH12Q6ZR08 3092 aa12.39□□□□□ -0.43
COL27A1-207ENST00000494090 KRTAP1-3Q8IUG1 177 aa12.38□□□□□ -0.43
COL27A1-207ENST00000494090 SPRR4Q96PI1 79 aa12.37□□□□□ -0.43
COL27A1-207ENST00000494090 A0A0G2JQZ4 141 aa12.36□□□□□ -0.43
COL27A1-207ENST00000494090 A0A1W2PNN7 141 aa12.36□□□□□ -0.43
COL27A1-207ENST00000494090 EPG5Q9HCE0 2579 aa12.36□□□□□ -0.43
COL27A1-207ENST00000494090 A0A1W2PNM2 257 aa12.35□□□□□ -0.43
COL27A1-207ENST00000494090 PSORS1C2Q9UIG4 136 aa12.35□□□□□ -0.43
COL27A1-207ENST00000494090 SPINT4Q6UDR6 99 aa12.34□□□□□ -0.43
COL27A1-207ENST00000494090 RBM12B-AS1Q9P1G2 102 aa12.33□□□□□ -0.44
COL27A1-207ENST00000494090 C9orf92A6NGG3 77 aa12.32□□□□□ -0.44
COL27A1-207ENST00000494090 IGLV5-37A0A075B6J1 123 aa12.32□□□□□ -0.44
COL27A1-207ENST00000494090 PRRC2CQ9Y520 2896 aaKnown RBP12.31□□□□□ -0.44
COL27A1-207ENST00000494090 IGLV5-48A0A075B6I7 105 aa12.3□□□□□ -0.44
COL27A1-207ENST00000494090 MIR22HGQ0VDD5 57 aa12.3□□□□□ -0.44
COL27A1-207ENST00000494090 CASC10Q5T4H9 136 aa12.3□□□□□ -0.44
COL27A1-207ENST00000494090 SMR3BP02814 79 aaPredicted RBP12.3□□□□□ -0.44
COL27A1-207ENST00000494090 CRIPTQ9P021 101 aa12.3□□□□□ -0.44
COL27A1-207ENST00000494090 KRTAP1-1Q07627 177 aa12.3□□□□□ -0.44
COL27A1-207ENST00000494090 FAM104AQ969W3 186 aa12.28□□□□□ -0.44
COL27A1-207ENST00000494090 SPANXA2-OT1Q8N9U9 137 aa12.24□□□□□ -0.45
COL27A1-207ENST00000494090 ANAPC11Q9NYG5 84 aa12.23□□□□□ -0.45
COL27A1-207ENST00000494090 CD164Q04900 197 aa12.2□□□□□ -0.46
COL27A1-207ENST00000494090 FLNBO75369 2602 aaKnown RBP12.18□□□□□ -0.46
COL27A1-207ENST00000494090 OCR1Q9BZK8 76 aa12.15□□□□□ -0.46
COL27A1-207ENST00000494090 MGAM2Q2M2H8 2515 aa12.13□□□□□ -0.47
COL27A1-207ENST00000494090 CEP350Q5VT06 3117 aa12.1□□□□□ -0.47
COL27A1-207ENST00000494090 HECTD1Q9ULT8 2610 aa12.09□□□□□ -0.47
COL27A1-207ENST00000494090 USP24Q9UPU5 2620 aa12.08□□□□□ -0.47
COL27A1-207ENST00000494090 WIPF1O43516 503 aa12.07□□□□□ -0.48
COL27A1-207ENST00000494090 CDC42SE1Q9NRR8 79 aa12.05□□□□□ -0.48
COL27A1-207ENST00000494090 TNP2Q05952 138 aa12.05□□□□□ -0.48
COL27A1-207ENST00000494090 FAM229BQ4G0N7 80 aa12.04□□□□□ -0.48
COL27A1-207ENST00000494090 Q8N1X5 172 aa12.03□□□□□ -0.48
COL27A1-207ENST00000494090 Q6ZSA8 131 aa12.01□□□□□ -0.49
COL27A1-207ENST00000494090 KTN1-AS1Q86SY8 53 aa12.01□□□□□ -0.49
COL27A1-207ENST00000494090 Q1T7F1 81 aa11.99□□□□□ -0.49
COL27A1-207ENST00000494090 CHD7Q9P2D1 2997 aa11.99□□□□□ -0.49
COL27A1-207ENST00000494090 LINC01554Q52M75 96 aa11.98□□□□□ -0.49
COL27A1-207ENST00000494090 IGLV7-46A0A075B6I9 117 aa11.97□□□□□ -0.49
COL27A1-207ENST00000494090 Q8NDZ9 215 aa11.94□□□□□ -0.5
COL27A1-207ENST00000494090 FLNAP21333 2647 aaKnown RBP11.94□□□□□ -0.5
COL27A1-207ENST00000494090 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP11.94□□□□□ -0.5
COL27A1-207ENST00000494090 A0A0D9SG42 100 aa11.93□□□□□ -0.5
COL27A1-207ENST00000494090 CR1P17927 2039 aa11.92□□□□□ -0.5
COL27A1-207ENST00000494090 LCA10Q71F78 164 aa11.92□□□□□ -0.5
COL27A1-207ENST00000494090 BPTFQ12830 3046 aa11.92□□□□□ -0.5
COL27A1-207ENST00000494090 SPRR1AP35321 89 aa11.91□□□□□ -0.5
COL27A1-207ENST00000494090 PLAC8Q9NZF1 115 aa11.91□□□□□ -0.5
COL27A1-207ENST00000494090 PRR26Q8N8Z3 221 aa11.9□□□□□ -0.51
COL27A1-207ENST00000494090 UTRNP46939 3433 aa11.89□□□□□ -0.51
COL27A1-207ENST00000494090 ITPR3Q14573 2671 aa11.85□□□□□ -0.51
COL27A1-207ENST00000494090 C5orf42Q9H799 3197 aa11.84□□□□□ -0.51
COL27A1-207ENST00000494090 MMP24-AS1A0A0U1RRL7 71 aa11.83□□□□□ -0.52
COL27A1-207ENST00000494090 CHD9Q3L8U1 2897 aa11.82□□□□□ -0.52
COL27A1-207ENST00000494090 HRES1P13985 223 aa11.81□□□□□ -0.52
COL27A1-207ENST00000494090 ZCCHC13Q8WW36 166 aaKnown RBP11.79□□□□□ -0.52
COL27A1-207ENST00000494090 A0A1B0GU33 70 aa11.79□□□□□ -0.52
COL27A1-207ENST00000494090 MAST4O15021 2626 aa11.78□□□□□ -0.52
COL27A1-207ENST00000494090 Q75L30 129 aa11.78□□□□□ -0.52
COL27A1-207ENST00000494090 SPRR1BP22528 89 aa11.77□□□□□ -0.52
COL27A1-207ENST00000494090 CAMK2N1Q7Z7J9 78 aa11.77□□□□□ -0.53
COL27A1-207ENST00000494090 ATRQ13535 2644 aa11.76□□□□□ -0.53
COL27A1-207ENST00000494090 CYSTM1Q9H1C7 97 aa11.76□□□□□ -0.53
COL27A1-207ENST00000494090 Q5XG85 94 aa11.75□□□□□ -0.53
COL27A1-207ENST00000494090 LUZP6Q538Z0 58 aa11.74□□□□□ -0.53
COL27A1-207ENST00000494090 CSAG1Q6PB30 78 aa11.73□□□□□ -0.53
COL27A1-207ENST00000494090 HELZ2Q9BYK8 2649 aaKnown RBP11.72□□□□□ -0.53
COL27A1-207ENST00000494090 LINC00472Q9H8W2 130 aa11.72□□□□□ -0.53
COL27A1-207ENST00000494090 LINC01558Q9Y6Z2 57 aa11.72□□□□□ -0.53
COL27A1-207ENST00000494090 M0R2T5 61 aa11.71□□□□□ -0.54
COL27A1-207ENST00000494090 Q8N9P0 234 aaPredicted RBP11.71□□□□□ -0.54
COL27A1-207ENST00000494090 KRTAP26-1Q6PEX3 210 aa11.7□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 70.3 ms