RNA–Protein interactions for RNA: ENST00000494080.5

CCDC88B-209, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 4,563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-209ENST00000494080 KRTAP10-3P60369 221 aa11.09□□□□□ -0.63
CCDC88B-209ENST00000494080 NBEAL2Q6ZNJ1 2754 aa11.08□□□□□ -0.64
CCDC88B-209ENST00000494080 H7BZZ5 65 aa11.08□□□□□ -0.64
CCDC88B-209ENST00000494080 DEFB116Q30KQ4 102 aa11.08□□□□□ -0.64
CCDC88B-209ENST00000494080 CYSTM1Q9H1C7 97 aa11.07□□□□□ -0.64
CCDC88B-209ENST00000494080 KRTAP1-1Q07627 177 aa11.07□□□□□ -0.64
CCDC88B-209ENST00000494080 IGLV9-49A0A0B4J1Y8 123 aa11.06□□□□□ -0.64
CCDC88B-209ENST00000494080 KLKP1Q107X0 134 aa11.05□□□□□ -0.64
CCDC88B-209ENST00000494080 C6orf48Q9UBA6 75 aa11.05□□□□□ -0.64
CCDC88B-209ENST00000494080 PLAC8L1A1L4L8 177 aa11.04□□□□□ -0.64
CCDC88B-209ENST00000494080 LINC01556Q5JQF7 62 aa11.03□□□□□ -0.64
CCDC88B-209ENST00000494080 KIAA0087Q14695 138 aa11.02□□□□□ -0.64
CCDC88B-209ENST00000494080 NUPR2A6NF83 97 aa11.01□□□□□ -0.65
CCDC88B-209ENST00000494080 F8WDY8 70 aa11.01□□□□□ -0.65
CCDC88B-209ENST00000494080 FAM104AQ969W3 186 aa11.01□□□□□ -0.65
CCDC88B-209ENST00000494080 A0A087WSZ3 146 aa11□□□□□ -0.65
CCDC88B-209ENST00000494080 HCG22E2RYF7 251 aa10.99□□□□□ -0.65
CCDC88B-209ENST00000494080 REG3GQ6UW15 175 aa10.99□□□□□ -0.65
CCDC88B-209ENST00000494080 ELOF1P60002 83 aaKnown RBP10.98□□□□□ -0.65
CCDC88B-209ENST00000494080 C7orf33Q8WU49 177 aa10.97□□□□□ -0.65
CCDC88B-209ENST00000494080 Q5XG85 94 aa10.97□□□□□ -0.65
CCDC88B-209ENST00000494080 CR1P17927 2039 aa10.97□□□□□ -0.65
CCDC88B-209ENST00000494080 CASC2Q6XLA1 102 aa10.96□□□□□ -0.65
CCDC88B-209ENST00000494080 ITPR2Q14571 2701 aa10.96□□□□□ -0.65
CCDC88B-209ENST00000494080 H0Y9P7 68 aa10.96□□□□□ -0.66
CCDC88B-209ENST00000494080 H3BNG1 76 aa10.95□□□□□ -0.66
CCDC88B-209ENST00000494080 PRLHP81277 87 aa10.95□□□□□ -0.66
CCDC88B-209ENST00000494080 PCOTHQ58A44 107 aa10.95□□□□□ -0.66
CCDC88B-209ENST00000494080 C22orf24Q9Y442 160 aa10.94□□□□□ -0.66
CCDC88B-209ENST00000494080 ZANQ9Y493 2812 aa10.94□□□□□ -0.66
CCDC88B-209ENST00000494080 KRTAP10-11P60412 298 aa10.93□□□□□ -0.66
CCDC88B-209ENST00000494080 NBEAL1Q6ZS30 2694 aa10.93□□□□□ -0.66
CCDC88B-209ENST00000494080 MUC3AQ02505 3323 aa10.93□□□□□ -0.66
CCDC88B-209ENST00000494080 OBSCN-AS1Q96MR7 158 aa10.93□□□□□ -0.66
CCDC88B-209ENST00000494080 IGLV6-57P01721 117 aa10.92□□□□□ -0.66
CCDC88B-209ENST00000494080 LINC00588Q9Y4M8 146 aa10.92□□□□□ -0.66
CCDC88B-209ENST00000494080 UTP20O75691 2785 aaKnown RBP10.91□□□□□ -0.66
CCDC88B-209ENST00000494080 hDV103S1A0JD37 113 aa10.91□□□□□ -0.66
CCDC88B-209ENST00000494080 OXTP01178 125 aa10.91□□□□□ -0.66
CCDC88B-209ENST00000494080 LINC00167Q96N53 147 aa10.89□□□□□ -0.67
CCDC88B-209ENST00000494080 ERC2-IT1O76042 136 aa10.89□□□□□ -0.67
CCDC88B-209ENST00000494080 WDFY3Q8IZQ1 3526 aa10.88□□□□□ -0.67
CCDC88B-209ENST00000494080 MDFIQ99750 246 aa10.87□□□□□ -0.67
CCDC88B-209ENST00000494080 ASH1LQ9NR48 2969 aaKnown RBP10.87□□□□□ -0.67
CCDC88B-209ENST00000494080 LIMD2Q9BT23 127 aa10.87□□□□□ -0.67
CCDC88B-209ENST00000494080 A8MUN3 132 aa10.87□□□□□ -0.67
CCDC88B-209ENST00000494080 LINC00612Q8N6U2 182 aa10.87□□□□□ -0.67
CCDC88B-209ENST00000494080 Q8NBF4 154 aa10.87□□□□□ -0.67
CCDC88B-209ENST00000494080 C1orf64Q8NEQ6 169 aa10.86□□□□□ -0.67
CCDC88B-209ENST00000494080 Q9BRP9 147 aa10.85□□□□□ -0.67
CCDC88B-209ENST00000494080 IGLV5-52A0A0A0MRZ9 124 aa10.85□□□□□ -0.67
CCDC88B-209ENST00000494080 CIRBP-AS1Q8TBR5 109 aa10.85□□□□□ -0.67
CCDC88B-209ENST00000494080 TRBV7-4A0A0J9YYF1 115 aa10.84□□□□□ -0.67
CCDC88B-209ENST00000494080 Q6ZRP5 223 aa10.84□□□□□ -0.67
CCDC88B-209ENST00000494080 ZNF706Q9Y5V0 76 aaPredicted RBP10.83□□□□□ -0.68
CCDC88B-209ENST00000494080 VPREB1P12018 145 aa10.83□□□□□ -0.68
CCDC88B-209ENST00000494080 BAHCC1Q9P281 2608 aa10.82□□□□□ -0.68
CCDC88B-209ENST00000494080 ST20-AS1Q8NBB2 130 aa10.82□□□□□ -0.68
CCDC88B-209ENST00000494080 K7EIL1 84 aa10.81□□□□□ -0.68
CCDC88B-209ENST00000494080 PRR34Q9NV39 138 aa10.8□□□□□ -0.68
CCDC88B-209ENST00000494080 C1orf134Q5TEV5 83 aa10.8□□□□□ -0.68
CCDC88B-209ENST00000494080 A0A1B0GW54 56 aa10.79□□□□□ -0.68
CCDC88B-209ENST00000494080 DNAH10OSP0CZ25 163 aa10.79□□□□□ -0.68
CCDC88B-209ENST00000494080 FP248Q71RG6 208 aaPredicted RBP10.79□□□□□ -0.68
CCDC88B-209ENST00000494080 NSD1Q96L73 2696 aaPredicted RBP10.79□□□□□ -0.68
CCDC88B-209ENST00000494080 K7EQZ3 153 aa10.79□□□□□ -0.68
CCDC88B-209ENST00000494080 LINC00528Q8N1L1 170 aa10.79□□□□□ -0.68
CCDC88B-209ENST00000494080 GVQW2A0A096LPI5 108 aaPredicted RBP10.78□□□□□ -0.68
CCDC88B-209ENST00000494080 IGHV6-1A0A0B4J1U7 121 aa10.78□□□□□ -0.68
CCDC88B-209ENST00000494080 Q6ZRX8 168 aa10.78□□□□□ -0.68
CCDC88B-209ENST00000494080 CHTF8P0CG12 524 aa10.76□□□□□ -0.69
CCDC88B-209ENST00000494080 FAM168BA1KXE4 195 aa10.76□□□□□ -0.69
CCDC88B-209ENST00000494080 LINC00476Q8WZB0 136 aa10.76□□□□□ -0.69
CCDC88B-209ENST00000494080 RETNLBQ9BQ08 111 aa10.75□□□□□ -0.69
CCDC88B-209ENST00000494080 CD164Q04900 197 aa10.75□□□□□ -0.69
CCDC88B-209ENST00000494080 CRYBG3Q68DQ2 2970 aa10.75□□□□□ -0.69
CCDC88B-209ENST00000494080 DCHS1Q96JQ0 3298 aa10.75□□□□□ -0.69
CCDC88B-209ENST00000494080 SPAG11AQ6PDA7 123 aa10.74□□□□□ -0.69
CCDC88B-209ENST00000494080 PHF5AQ7RTV0 110 aaKnown RBP10.74□□□□□ -0.69
CCDC88B-209ENST00000494080 ASPMQ8IZT6 3477 aa10.74□□□□□ -0.69
CCDC88B-209ENST00000494080 RPL37AP61513 92 aaKnown RBP10.74□□□□□ -0.69
CCDC88B-209ENST00000494080 TRAV22A0A0B4J277 110 aa10.73□□□□□ -0.69
CCDC88B-209ENST00000494080 SERTAD4-AS1Q5TG53 156 aa10.73□□□□□ -0.69
CCDC88B-209ENST00000494080 APCP25054 2843 aa10.72□□□□□ -0.69
CCDC88B-209ENST00000494080 C15orf56Q8N910 161 aa10.72□□□□□ -0.69
CCDC88B-209ENST00000494080 HRNRQ86YZ3 2850 aaPredicted RBP10.72□□□□□ -0.69
CCDC88B-209ENST00000494080 NBDYA0A0U1RRE5 68 aa10.72□□□□□ -0.69
CCDC88B-209ENST00000494080 RELNP78509 3460 aa10.71□□□□□ -0.69
CCDC88B-209ENST00000494080 CELSR2Q9HCU4 2923 aa10.71□□□□□ -0.7
CCDC88B-209ENST00000494080 Q8N377 158 aa10.69□□□□□ -0.7
CCDC88B-209ENST00000494080 NF1P21359 2839 aa10.69□□□□□ -0.7
CCDC88B-209ENST00000494080 LAMA5O15230 3695 aa10.68□□□□□ -0.7
CCDC88B-209ENST00000494080 C16orf90A8MZG2 172 aa10.67□□□□□ -0.7
CCDC88B-209ENST00000494080 OCR1Q9BZK8 76 aa10.66□□□□□ -0.7
CCDC88B-209ENST00000494080 FAM229BQ4G0N7 80 aa10.66□□□□□ -0.7
CCDC88B-209ENST00000494080 DMDP11532 3685 aa10.65□□□□□ -0.7
CCDC88B-209ENST00000494080 KCNQ1DNQ9H478 68 aa10.65□□□□□ -0.71
CCDC88B-209ENST00000494080 H3BPC8 53 aa10.64□□□□□ -0.71
CCDC88B-209ENST00000494080 CASC10Q5T4H9 136 aa10.64□□□□□ -0.71
CCDC88B-209ENST00000494080 HIVEP1P15822 2718 aa10.64□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms