RNA–Protein interactions for RNA: ENST00000493683.5

RNF40-203, Transcript of ring finger protein 40, humanhuman

TSL 2

Gene RNF40, Length 5,371 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF40-203ENST00000493683 C15orf56Q8N910 161 aa13.27□□□□□ -0.28
RNF40-203ENST00000493683 MIR22HGQ0VDD5 57 aa13.26□□□□□ -0.29
RNF40-203ENST00000493683 ZNF861PO60384 105 aa13.25□□□□□ -0.29
RNF40-203ENST00000493683 H7BZZ5 65 aa13.24□□□□□ -0.29
RNF40-203ENST00000493683 EIF4EBP3O60516 100 aaPredicted RBP13.24□□□□□ -0.29
RNF40-203ENST00000493683 ANKRD17O75179 2603 aaKnown RBP13.23□□□□□ -0.29
RNF40-203ENST00000493683 POLQO75417 2590 aa13.22□□□□□ -0.29
RNF40-203ENST00000493683 C9orf129Q5T035 196 aaKnown RBP13.21□□□□□ -0.29
RNF40-203ENST00000493683 SPANXA2-OT1Q8N9U9 137 aa13.21□□□□□ -0.29
RNF40-203ENST00000493683 C19orf73Q9NVV2 129 aa13.21□□□□□ -0.29
RNF40-203ENST00000493683 CRIPTQ9P021 101 aa13.21□□□□□ -0.29
RNF40-203ENST00000493683 ACANP16112 2415 aa13.21□□□□□ -0.3
RNF40-203ENST00000493683 DSCR10P59022 87 aa13.2□□□□□ -0.3
RNF40-203ENST00000493683 CD164Q04900 197 aa13.18□□□□□ -0.3
RNF40-203ENST00000493683 LINC00304Q8N9R0 145 aa13.17□□□□□ -0.3
RNF40-203ENST00000493683 J3QL48 77 aa13.15□□□□□ -0.3
RNF40-203ENST00000493683 C9orf163Q8N9P6 203 aa13.15□□□□□ -0.3
RNF40-203ENST00000493683 GIG44P09565 113 aaPredicted RBP13.13□□□□□ -0.31
RNF40-203ENST00000493683 KTN1-AS1Q86SY8 53 aa13.12□□□□□ -0.31
RNF40-203ENST00000493683 LINC00336Q6ZUF6 198 aa13.11□□□□□ -0.31
RNF40-203ENST00000493683 PCSK5Q92824 1860 aa13.1□□□□□ -0.31
RNF40-203ENST00000493683 K7EIL1 84 aa13.08□□□□□ -0.31
RNF40-203ENST00000493683 LCA10Q71F78 164 aa13.08□□□□□ -0.32
RNF40-203ENST00000493683 OBSCN-AS1Q96MR7 158 aa13.08□□□□□ -0.32
RNF40-203ENST00000493683 APLNQ9ULZ1 77 aa13.07□□□□□ -0.32
RNF40-203ENST00000493683 A0A087WTM6 91 aa13.07□□□□□ -0.32
RNF40-203ENST00000493683 CNBPP62633 177 aaKnown RBP13.07□□□□□ -0.32
RNF40-203ENST00000493683 A0A096LNT2 108 aa13.06□□□□□ -0.32
RNF40-203ENST00000493683 KRTAP10-11P60412 298 aa13.05□□□□□ -0.32
RNF40-203ENST00000493683 IGLV5-37A0A075B6J1 123 aa13.05□□□□□ -0.32
RNF40-203ENST00000493683 A0A1W2PNM2 257 aa13.04□□□□□ -0.32
RNF40-203ENST00000493683 IGLV5-48A0A075B6I7 105 aa13.04□□□□□ -0.32
RNF40-203ENST00000493683 SPRR4Q96PI1 79 aa13.04□□□□□ -0.32
RNF40-203ENST00000493683 IGLV7-43P04211 117 aa13.03□□□□□ -0.32
RNF40-203ENST00000493683 COX6B2Q6YFQ2 88 aa13.03□□□□□ -0.32
RNF40-203ENST00000493683 CDC42SE1Q9NRR8 79 aa13.01□□□□□ -0.33
RNF40-203ENST00000493683 FAM104AQ969W3 186 aa13□□□□□ -0.33
RNF40-203ENST00000493683 EPG5Q9HCE0 2579 aa12.97□□□□□ -0.33
RNF40-203ENST00000493683 A0A1W2PNN7 141 aa12.95□□□□□ -0.34
RNF40-203ENST00000493683 PSORS1C2Q9UIG4 136 aa12.94□□□□□ -0.34
RNF40-203ENST00000493683 ZNF575Q86XF7 245 aa12.93□□□□□ -0.34
RNF40-203ENST00000493683 RBM12B-AS1Q9P1G2 102 aa12.93□□□□□ -0.34
RNF40-203ENST00000493683 A0A0G2JQZ4 141 aa12.92□□□□□ -0.34
RNF40-203ENST00000493683 C9orf92A6NGG3 77 aa12.91□□□□□ -0.34
RNF40-203ENST00000493683 Q1T7F1 81 aa12.91□□□□□ -0.34
RNF40-203ENST00000493683 UTRNP46939 3433 aa12.9□□□□□ -0.34
RNF40-203ENST00000493683 OCR1Q9BZK8 76 aa12.9□□□□□ -0.34
RNF40-203ENST00000493683 KRTAP10-3P60369 221 aa12.89□□□□□ -0.35
RNF40-203ENST00000493683 PCNTO95613 3336 aa12.89□□□□□ -0.35
RNF40-203ENST00000493683 DNAH12Q6ZR08 3092 aa12.84□□□□□ -0.35
RNF40-203ENST00000493683 FLNBO75369 2602 aaKnown RBP12.83□□□□□ -0.35
RNF40-203ENST00000493683 ANAPC11Q9NYG5 84 aa12.82□□□□□ -0.36
RNF40-203ENST00000493683 MGAM2Q2M2H8 2515 aa12.8□□□□□ -0.36
RNF40-203ENST00000493683 USP24Q9UPU5 2620 aa12.8□□□□□ -0.36
RNF40-203ENST00000493683 CASC10Q5T4H9 136 aa12.79□□□□□ -0.36
RNF40-203ENST00000493683 IGLV7-46A0A075B6I9 117 aa12.78□□□□□ -0.36
RNF40-203ENST00000493683 WIPF1O43516 503 aa12.78□□□□□ -0.36
RNF40-203ENST00000493683 SMR3BP02814 79 aaPredicted RBP12.75□□□□□ -0.37
RNF40-203ENST00000493683 Q8N1X5 172 aa12.75□□□□□ -0.37
RNF40-203ENST00000493683 CEP350Q5VT06 3117 aa12.74□□□□□ -0.37
RNF40-203ENST00000493683 CENPFP49454 3210 aa12.74□□□□□ -0.37
RNF40-203ENST00000493683 Q75L30 129 aa12.71□□□□□ -0.37
RNF40-203ENST00000493683 A0A0D9SG42 100 aa12.69□□□□□ -0.38
RNF40-203ENST00000493683 PRR26Q8N8Z3 221 aa12.68□□□□□ -0.38
RNF40-203ENST00000493683 LUZP6Q538Z0 58 aa12.67□□□□□ -0.38
RNF40-203ENST00000493683 HECTD1Q9ULT8 2610 aa12.65□□□□□ -0.38
RNF40-203ENST00000493683 KRTAP1-3Q8IUG1 177 aa12.65□□□□□ -0.38
RNF40-203ENST00000493683 FAM229BQ4G0N7 80 aa12.64□□□□□ -0.39
RNF40-203ENST00000493683 LINC01554Q52M75 96 aa12.62□□□□□ -0.39
RNF40-203ENST00000493683 A0A1B0GU33 70 aa12.62□□□□□ -0.39
RNF40-203ENST00000493683 LINC01558Q9Y6Z2 57 aa12.62□□□□□ -0.39
RNF40-203ENST00000493683 HRES1P13985 223 aa12.61□□□□□ -0.39
RNF40-203ENST00000493683 KRTAP1-1Q07627 177 aa12.6□□□□□ -0.39
RNF40-203ENST00000493683 BPTFQ12830 3046 aa12.57□□□□□ -0.4
RNF40-203ENST00000493683 MMP24-AS1A0A0U1RRL7 71 aa12.55□□□□□ -0.4
RNF40-203ENST00000493683 SPRR1AP35321 89 aa12.54□□□□□ -0.4
RNF40-203ENST00000493683 Q6ZSA8 131 aa12.53□□□□□ -0.4
RNF40-203ENST00000493683 Q8N9P0 234 aaPredicted RBP12.52□□□□□ -0.41
RNF40-203ENST00000493683 MAST4O15021 2626 aa12.49□□□□□ -0.41
RNF40-203ENST00000493683 SPRR1BP22528 89 aa12.48□□□□□ -0.41
RNF40-203ENST00000493683 DMAC1Q96GE9 116 aa12.48□□□□□ -0.41
RNF40-203ENST00000493683 ATRQ13535 2644 aa12.48□□□□□ -0.41
RNF40-203ENST00000493683 LINC00483Q53H64 154 aa12.47□□□□□ -0.41
RNF40-203ENST00000493683 ZCCHC13Q8WW36 166 aaKnown RBP12.47□□□□□ -0.41
RNF40-203ENST00000493683 TNP2Q05952 138 aa12.47□□□□□ -0.41
RNF40-203ENST00000493683 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP12.47□□□□□ -0.41
RNF40-203ENST00000493683 PLAC8Q9NZF1 115 aa12.46□□□□□ -0.41
RNF40-203ENST00000493683 Q5XG85 94 aa12.46□□□□□ -0.41
RNF40-203ENST00000493683 CAMK2N1Q7Z7J9 78 aa12.43□□□□□ -0.42
RNF40-203ENST00000493683 CR1P17927 2039 aa12.42□□□□□ -0.42
RNF40-203ENST00000493683 LINC00472Q9H8W2 130 aa12.38□□□□□ -0.43
RNF40-203ENST00000493683 FP248Q71RG6 208 aaPredicted RBP12.38□□□□□ -0.43
RNF40-203ENST00000493683 CSAG1Q6PB30 78 aa12.36□□□□□ -0.43
RNF40-203ENST00000493683 FLNAP21333 2647 aaKnown RBP12.34□□□□□ -0.43
RNF40-203ENST00000493683 Q5W150 140 aa12.33□□□□□ -0.44
RNF40-203ENST00000493683 Q5VV11 94 aa12.33□□□□□ -0.44
RNF40-203ENST00000493683 Q8NDZ9 215 aa12.32□□□□□ -0.44
RNF40-203ENST00000493683 S4R3F8 94 aa12.31□□□□□ -0.44
RNF40-203ENST00000493683 HELZ2Q9BYK8 2649 aaKnown RBP12.25□□□□□ -0.45
RNF40-203ENST00000493683 CYSTM1Q9H1C7 97 aa12.25□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 99.9 ms