RNA–Protein interactions for RNA: ENST00000493662.6

MSH5-SAPCD1-207, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS P5 TSL 1 (best) BASIC

Gene MSH5-SAPCD1, Length 3,991 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-207ENST00000493662 UNQ6190/PRO20217Q6UXQ8 127 aa7.42□□□□□ -1.22
MSH5-SAPCD1-207ENST00000493662 PKD1L1Q8TDX9 2849 aa7.42□□□□□ -1.22
MSH5-SAPCD1-207ENST00000493662 M0R2N4 97 aa7.42□□□□□ -1.22
MSH5-SAPCD1-207ENST00000493662 IL17DQ8TAD2 202 aa7.42□□□□□ -1.22
MSH5-SAPCD1-207ENST00000493662 OXTP01178 125 aa7.41□□□□□ -1.22
MSH5-SAPCD1-207ENST00000493662 Q8N9L7 120 aa7.41□□□□□ -1.22
MSH5-SAPCD1-207ENST00000493662 TENM3Q9P273 2699 aa7.41□□□□□ -1.22
MSH5-SAPCD1-207ENST00000493662 IGKV2-28A0A075B6P5 120 aa7.41□□□□□ -1.22
MSH5-SAPCD1-207ENST00000493662 A6NED7 52 aa7.41□□□□□ -1.22
MSH5-SAPCD1-207ENST00000493662 A8MTW9 85 aa7.41□□□□□ -1.22
MSH5-SAPCD1-207ENST00000493662 IGKV2D-28P01615 120 aa7.41□□□□□ -1.22
MSH5-SAPCD1-207ENST00000493662 CSNK1G2-AS1Q8NCQ2 148 aa7.4□□□□□ -1.22
MSH5-SAPCD1-207ENST00000493662 TRRAPQ9Y4A5 3859 aa7.4□□□□□ -1.22
MSH5-SAPCD1-207ENST00000493662 PLAC8L1A1L4L8 177 aa7.39□□□□□ -1.23
MSH5-SAPCD1-207ENST00000493662 KLKP1Q107X0 134 aa7.39□□□□□ -1.23
MSH5-SAPCD1-207ENST00000493662 CXCL6P80162 114 aa7.39□□□□□ -1.23
MSH5-SAPCD1-207ENST00000493662 KRTAP10-11P60412 298 aa7.38□□□□□ -1.23
MSH5-SAPCD1-207ENST00000493662 CYSRT1A8MQ03 144 aa7.38□□□□□ -1.23
MSH5-SAPCD1-207ENST00000493662 HIGD2AQ9BW72 106 aa7.38□□□□□ -1.23
MSH5-SAPCD1-207ENST00000493662 MUC7Q8TAX7 377 aa7.38□□□□□ -1.23
MSH5-SAPCD1-207ENST00000493662 UBE2BP63146 152 aa7.37□□□□□ -1.23
MSH5-SAPCD1-207ENST00000493662 LINC00575Q6W349 94 aa7.36□□□□□ -1.23
MSH5-SAPCD1-207ENST00000493662 Q8IZM0 81 aa7.36□□□□□ -1.23
MSH5-SAPCD1-207ENST00000493662 CD164L2Q6UWJ8 174 aa7.35□□□□□ -1.23
MSH5-SAPCD1-207ENST00000493662 UBE2AP49459 152 aa7.35□□□□□ -1.23
MSH5-SAPCD1-207ENST00000493662 LELP1Q5T871 98 aa7.35□□□□□ -1.23
MSH5-SAPCD1-207ENST00000493662 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP7.35□□□□□ -1.23
MSH5-SAPCD1-207ENST00000493662 Q8NAQ8 132 aa7.35□□□□□ -1.23
MSH5-SAPCD1-207ENST00000493662 Q6ZQT0 140 aa7.34□□□□□ -1.23
MSH5-SAPCD1-207ENST00000493662 LYPD5Q6UWN5 251 aa7.34□□□□□ -1.23
MSH5-SAPCD1-207ENST00000493662 ETDCA0A1B0GVM5 59 aa7.34□□□□□ -1.24
MSH5-SAPCD1-207ENST00000493662 NDUFB1O75438 58 aa7.34□□□□□ -1.24
MSH5-SAPCD1-207ENST00000493662 IGHV3OR16-9A0A0B4J2B5 98 aa7.33□□□□□ -1.24
MSH5-SAPCD1-207ENST00000493662 PRR15LQ9BU68 103 aa7.33□□□□□ -1.24
MSH5-SAPCD1-207ENST00000493662 C10orf25Q5T742 122 aa7.33□□□□□ -1.24
MSH5-SAPCD1-207ENST00000493662 ZNF73O43830 326 aaPredicted RBP7.32□□□□□ -1.24
MSH5-SAPCD1-207ENST00000493662 COX17Q14061 63 aa7.32□□□□□ -1.24
MSH5-SAPCD1-207ENST00000493662 TENM2Q9NT68 2774 aa7.31□□□□□ -1.24
MSH5-SAPCD1-207ENST00000493662 RPL37AP8A6NKH3 93 aa7.31□□□□□ -1.24
MSH5-SAPCD1-207ENST00000493662 WFDC13Q8IUB5 93 aa7.31□□□□□ -1.24
MSH5-SAPCD1-207ENST00000493662 FP248Q71RG6 208 aaPredicted RBP7.3□□□□□ -1.24
MSH5-SAPCD1-207ENST00000493662 A0A096LNI7 61 aa7.3□□□□□ -1.24
MSH5-SAPCD1-207ENST00000493662 LINC00208Q96KT6 92 aa7.29□□□□□ -1.24
MSH5-SAPCD1-207ENST00000493662 CD164Q04900 197 aa7.27□□□□□ -1.24
MSH5-SAPCD1-207ENST00000493662 MDFIQ99750 246 aa7.27□□□□□ -1.24
MSH5-SAPCD1-207ENST00000493662 LOC110117498A0A087WWA1 95 aa7.27□□□□□ -1.25
MSH5-SAPCD1-207ENST00000493662 FAM104AQ969W3 186 aa7.27□□□□□ -1.25
MSH5-SAPCD1-207ENST00000493662 SMIM29Q86T20 159 aa7.27□□□□□ -1.25
MSH5-SAPCD1-207ENST00000493662 NDUFS5O43920 106 aa7.26□□□□□ -1.25
MSH5-SAPCD1-207ENST00000493662 SYCNQ0VAF6 134 aa7.26□□□□□ -1.25
MSH5-SAPCD1-207ENST00000493662 A8MUN3 132 aa7.25□□□□□ -1.25
MSH5-SAPCD1-207ENST00000493662 OBSCN-AS1Q96MR7 158 aa7.25□□□□□ -1.25
MSH5-SAPCD1-207ENST00000493662 AKAP9Q99996 3911 aa7.25□□□□□ -1.25
MSH5-SAPCD1-207ENST00000493662 CDK2AP2O75956 126 aa7.24□□□□□ -1.25
MSH5-SAPCD1-207ENST00000493662 A0A1B0GUV1 79 aa7.24□□□□□ -1.25
MSH5-SAPCD1-207ENST00000493662 Q6ZRU5 148 aa7.24□□□□□ -1.25
MSH5-SAPCD1-207ENST00000493662 K7EIL1 84 aa7.22□□□□□ -1.25
MSH5-SAPCD1-207ENST00000493662 M0R378 163 aa7.22□□□□□ -1.25
MSH5-SAPCD1-207ENST00000493662 ERC2-IT1O76042 136 aa7.22□□□□□ -1.25
MSH5-SAPCD1-207ENST00000493662 C22orf24Q9Y442 160 aa7.22□□□□□ -1.25
MSH5-SAPCD1-207ENST00000493662 H0Y9J4 135 aa7.21□□□□□ -1.26
MSH5-SAPCD1-207ENST00000493662 C1orf64Q8NEQ6 169 aa7.21□□□□□ -1.26
MSH5-SAPCD1-207ENST00000493662 B9D2Q9BPU9 175 aa7.21□□□□□ -1.26
MSH5-SAPCD1-207ENST00000493662 TGP01266 2768 aa7.21□□□□□ -1.26
MSH5-SAPCD1-207ENST00000493662 LIMD2Q9BT23 127 aa7.2□□□□□ -1.26
MSH5-SAPCD1-207ENST00000493662 DEFB116Q30KQ4 102 aa7.2□□□□□ -1.26
MSH5-SAPCD1-207ENST00000493662 C1orf137Q5JT78 98 aa7.2□□□□□ -1.26
MSH5-SAPCD1-207ENST00000493662 LY6G6CO95867 125 aa7.19□□□□□ -1.26
MSH5-SAPCD1-207ENST00000493662 TRAV22A0A0B4J277 110 aa7.18□□□□□ -1.26
MSH5-SAPCD1-207ENST00000493662 HCG22E2RYF7 251 aa7.18□□□□□ -1.26
MSH5-SAPCD1-207ENST00000493662 FAM229BQ4G0N7 80 aa7.18□□□□□ -1.26
MSH5-SAPCD1-207ENST00000493662 C6orf48Q9UBA6 75 aa7.18□□□□□ -1.26
MSH5-SAPCD1-207ENST00000493662 TRBV7-4A0A0J9YYF1 115 aa7.18□□□□□ -1.26
MSH5-SAPCD1-207ENST00000493662 PRR15Q8IV56 129 aa7.18□□□□□ -1.26
MSH5-SAPCD1-207ENST00000493662 LINC00588Q9Y4M8 146 aa7.18□□□□□ -1.26
MSH5-SAPCD1-207ENST00000493662 CASC10Q5T4H9 136 aa7.17□□□□□ -1.26
MSH5-SAPCD1-207ENST00000493662 IGKV4-1P06312 121 aa7.15□□□□□ -1.26
MSH5-SAPCD1-207ENST00000493662 hDV103S1A0JD37 113 aa7.14□□□□□ -1.27
MSH5-SAPCD1-207ENST00000493662 DHRS4-AS1Q9P1J3 65 aa7.14□□□□□ -1.27
MSH5-SAPCD1-207ENST00000493662 H0Y9P7 68 aa7.13□□□□□ -1.27
MSH5-SAPCD1-207ENST00000493662 LINC00167Q96N53 147 aa7.13□□□□□ -1.27
MSH5-SAPCD1-207ENST00000493662 KTN1-AS1Q86SY8 53 aa7.13□□□□□ -1.27
MSH5-SAPCD1-207ENST00000493662 FAM168BA1KXE4 195 aa7.12□□□□□ -1.27
MSH5-SAPCD1-207ENST00000493662 LINC00612Q8N6U2 182 aa7.12□□□□□ -1.27
MSH5-SAPCD1-207ENST00000493662 PCOTHQ58A44 107 aa7.11□□□□□ -1.27
MSH5-SAPCD1-207ENST00000493662 CHTF8P0CG12 524 aa7.11□□□□□ -1.27
MSH5-SAPCD1-207ENST00000493662 KIAA0087Q14695 138 aa7.11□□□□□ -1.27
MSH5-SAPCD1-207ENST00000493662 CASC2Q6XLA1 102 aa7.1□□□□□ -1.27
MSH5-SAPCD1-207ENST00000493662 ELOF1P60002 83 aaKnown RBP7.09□□□□□ -1.27
MSH5-SAPCD1-207ENST00000493662 PRLHP81277 87 aa7.09□□□□□ -1.27
MSH5-SAPCD1-207ENST00000493662 EGFEM1PQ0D2K5 195 aa7.09□□□□□ -1.27
MSH5-SAPCD1-207ENST00000493662 Q6ZRP5 223 aa7.09□□□□□ -1.27
MSH5-SAPCD1-207ENST00000493662 LINC01556Q5JQF7 62 aa7.09□□□□□ -1.27
MSH5-SAPCD1-207ENST00000493662 DNAH10OSP0CZ25 163 aa7.09□□□□□ -1.28
MSH5-SAPCD1-207ENST00000493662 EPM2AB3EWF7 344 aa7.08□□□□□ -1.28
MSH5-SAPCD1-207ENST00000493662 OCR1Q9BZK8 76 aa7.08□□□□□ -1.28
MSH5-SAPCD1-207ENST00000493662 ANK3Q12955 4377 aaKnown RBP7.07□□□□□ -1.28
MSH5-SAPCD1-207ENST00000493662 A0A087WSZ3 146 aa7.07□□□□□ -1.28
MSH5-SAPCD1-207ENST00000493662 Q1T7F1 81 aa7.07□□□□□ -1.28
MSH5-SAPCD1-207ENST00000493662 SPAG11AQ6PDA7 123 aa7.07□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 69.5 ms