RNA–Protein interactions for RNA: ENST00000493379.1

VPS52-219, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 5

Gene VPS52, Length 786 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-219ENST00000493379 FAM19A5Q7Z5A7 132 aaPredicted RBP4.1□□□□□ -1.75
VPS52-219ENST00000493379 Q8N9P0 234 aaPredicted RBP4.1□□□□□ -1.75
VPS52-219ENST00000493379 LITAFQ99732 161 aa4.1□□□□□ -1.75
VPS52-219ENST00000493379 IGLV1-50A0A075B6I6 118 aa4.09□□□□□ -1.75
VPS52-219ENST00000493379 NDUFC2O95298 119 aa4.09□□□□□ -1.75
VPS52-219ENST00000493379 IGLV7-43P04211 117 aa4.09□□□□□ -1.75
VPS52-219ENST00000493379 S100A2P29034 98 aa4.09□□□□□ -1.75
VPS52-219ENST00000493379 MEIG1Q5JSS6 88 aa4.09□□□□□ -1.75
VPS52-219ENST00000493379 ADAMTSL4-AS1Q5T5F5 129 aa4.09□□□□□ -1.75
VPS52-219ENST00000493379 MIR7-3HGQ8N6C7 128 aa4.09□□□□□ -1.75
VPS52-219ENST00000493379 TRBV10-2A0A0K0K1G8 114 aa4.08□□□□□ -1.76
VPS52-219ENST00000493379 KRTAP13-1Q8IUC0 172 aa4.08□□□□□ -1.76
VPS52-219ENST00000493379 A0A0U1RQV1 116 aa4.07□□□□□ -1.76
VPS52-219ENST00000493379 M0R378 163 aa4.07□□□□□ -1.76
VPS52-219ENST00000493379 ZNF861PO60384 105 aa4.07□□□□□ -1.76
VPS52-219ENST00000493379 SPRR1AP35321 89 aa4.07□□□□□ -1.76
VPS52-219ENST00000493379 C1orf137Q5JT78 98 aa4.07□□□□□ -1.76
VPS52-219ENST00000493379 Q6ZVH6 145 aa4.07□□□□□ -1.76
VPS52-219ENST00000493379 LINC01600Q96MT4 127 aa4.07□□□□□ -1.76
VPS52-219ENST00000493379 KCNQ1DNQ9H478 68 aa4.07□□□□□ -1.76
VPS52-219ENST00000493379 KRTAP4-16G5E9R7 235 aaPredicted RBP4.06□□□□□ -1.76
VPS52-219ENST00000493379 H0Y9J4 135 aa4.06□□□□□ -1.76
VPS52-219ENST00000493379 BCE1O60756 84 aa4.06□□□□□ -1.76
VPS52-219ENST00000493379 KRTAP10-8P60410 259 aa4.06□□□□□ -1.76
VPS52-219ENST00000493379 JOSD1Q15040 202 aaPredicted RBP4.06□□□□□ -1.76
VPS52-219ENST00000493379 SOSTDC1Q6X4U4 206 aa4.06□□□□□ -1.76
VPS52-219ENST00000493379 NKAPP1Q8N9T2 125 aa4.06□□□□□ -1.76
VPS52-219ENST00000493379 KRTAP4-11Q9BYQ6 195 aa4.06□□□□□ -1.76
VPS52-219ENST00000493379 TTTY13Q9BZ97 58 aa4.06□□□□□ -1.76
VPS52-219ENST00000493379 A0A0U1RRA0 63 aa4.05□□□□□ -1.76
VPS52-219ENST00000493379 ZNF815PA8K554 130 aa4.05□□□□□ -1.76
VPS52-219ENST00000493379 DLEU1O43261 78 aa4.05□□□□□ -1.76
VPS52-219ENST00000493379 UBE2BP63146 152 aa4.05□□□□□ -1.76
VPS52-219ENST00000493379 BOD1L2Q8IYS8 172 aa4.05□□□□□ -1.76
VPS52-219ENST00000493379 ATOH7Q8N100 152 aa4.05□□□□□ -1.76
VPS52-219ENST00000493379 LINC00308Q8TCZ7 52 aa4.05□□□□□ -1.76
VPS52-219ENST00000493379 DIRC1Q969H9 104 aa4.05□□□□□ -1.76
VPS52-219ENST00000493379 SPANXDQ9BXN6 97 aa4.05□□□□□ -1.76
VPS52-219ENST00000493379 SPANXCQ9NY87 97 aa4.05□□□□□ -1.76
VPS52-219ENST00000493379 RPL37AP8A6NKH3 93 aa4.04□□□□□ -1.76
VPS52-219ENST00000493379 IGLV6-57P01721 117 aa4.04□□□□□ -1.76
VPS52-219ENST00000493379 KRTAP1-4P0C5Y4 121 aa4.04□□□□□ -1.76
VPS52-219ENST00000493379 IFITM1P13164 125 aa4.04□□□□□ -1.76
VPS52-219ENST00000493379 PCP2Q8IVA1 136 aa4.04□□□□□ -1.76
VPS52-219ENST00000493379 DAND5Q8N907 189 aa4.04□□□□□ -1.76
VPS52-219ENST00000493379 TMEM126AQ9H061 195 aa4.04□□□□□ -1.76
VPS52-219ENST00000493379 SPANXB1Q9NS25 103 aaPredicted RBP4.04□□□□□ -1.76
VPS52-219ENST00000493379 IGKV2-28A0A075B6P5 120 aa4.03□□□□□ -1.76
VPS52-219ENST00000493379 IGKV2D-28P01615 120 aa4.03□□□□□ -1.76
VPS52-219ENST00000493379 RPL28P46779 137 aaKnown RBP4.03□□□□□ -1.76
VPS52-219ENST00000493379 REG3GQ6UW15 175 aa4.03□□□□□ -1.76
VPS52-219ENST00000493379 SMIM29Q86T20 159 aa4.03□□□□□ -1.76
VPS52-219ENST00000493379 LINC00518Q8N0U6 118 aa4.03□□□□□ -1.76
VPS52-219ENST00000493379 LINC00337Q8N6G1 96 aa4.03□□□□□ -1.76
VPS52-219ENST00000493379 IGKV2D-30A0A075B6S6 120 aa4.02□□□□□ -1.77
VPS52-219ENST00000493379 HSBP1L1C9JCN9 74 aa4.02□□□□□ -1.77
VPS52-219ENST00000493379 TMEM238C9JI98 176 aa4.02□□□□□ -1.77
VPS52-219ENST00000493379 COX8AP10176 69 aa4.02□□□□□ -1.77
VPS52-219ENST00000493379 TRBV10-3A0A0K0K1G6 114 aa4.01□□□□□ -1.77
VPS52-219ENST00000493379 PYY3Q5JQD4 70 aa4.01□□□□□ -1.77
VPS52-219ENST00000493379 COPS9Q8WXC6 57 aa4.01□□□□□ -1.77
VPS52-219ENST00000493379 MIEN1Q9BRT3 115 aa4.01□□□□□ -1.77
VPS52-219ENST00000493379 DDTP30046 118 aa4□□□□□ -1.77
VPS52-219ENST00000493379 SCGB1D4Q6XE38 83 aa4□□□□□ -1.77
VPS52-219ENST00000493379 MUSTN1Q8IVN3 82 aa4□□□□□ -1.77
VPS52-219ENST00000493379 HIGD1BQ9P298 99 aa4□□□□□ -1.77
VPS52-219ENST00000493379 CBY1Q9Y3M2 126 aa4□□□□□ -1.77
VPS52-219ENST00000493379 NCR3O14931 201 aa3.99□□□□□ -1.77
VPS52-219ENST00000493379 LINC01547P58512 204 aaPredicted RBP3.99□□□□□ -1.77
VPS52-219ENST00000493379 FAM229BQ4G0N7 80 aa3.99□□□□□ -1.77
VPS52-219ENST00000493379 TRBV7-6A0A0J9YX20 115 aa3.98□□□□□ -1.77
VPS52-219ENST00000493379 UBE2AP49459 152 aa3.98□□□□□ -1.77
VPS52-219ENST00000493379 CTAG1AP78358 180 aa3.98□□□□□ -1.77
VPS52-219ENST00000493379 S100A12P80511 92 aa3.98□□□□□ -1.77
VPS52-219ENST00000493379 FAM19A1Q7Z5A9 133 aa3.98□□□□□ -1.77
VPS52-219ENST00000493379 SMCR5Q8TEV8 140 aa3.98□□□□□ -1.77
VPS52-219ENST00000493379 TRAV23DV6A0A075B6W5 121 aa3.97□□□□□ -1.77
VPS52-219ENST00000493379 ZNF73O43830 326 aaPredicted RBP3.97□□□□□ -1.77
VPS52-219ENST00000493379 NPC2P61916 151 aa3.97□□□□□ -1.77
VPS52-219ENST00000493379 S100A7L2Q5SY68 101 aa3.97□□□□□ -1.77
VPS52-219ENST00000493379 Q6ZRX8 168 aa3.97□□□□□ -1.77
VPS52-219ENST00000493379 TRAV13-2A0A0B4J235 113 aa3.96□□□□□ -1.78
VPS52-219ENST00000493379 RPL13AP40429 203 aaKnown RBP3.96□□□□□ -1.78
VPS52-219ENST00000493379 PRLHP81277 87 aa3.96□□□□□ -1.78
VPS52-219ENST00000493379 TAL2Q16559 108 aa3.96□□□□□ -1.78
VPS52-219ENST00000493379 SPATA45Q537H7 98 aa3.96□□□□□ -1.78
VPS52-219ENST00000493379 LINC00483Q53H64 154 aa3.96□□□□□ -1.78
VPS52-219ENST00000493379 SLC25A34Q6PIV7 304 aa3.96□□□□□ -1.78
VPS52-219ENST00000493379 C2orf91Q6ZV80 131 aa3.96□□□□□ -1.78
VPS52-219ENST00000493379 C14orf144Q96I85 54 aa3.96□□□□□ -1.78
VPS52-219ENST00000493379 Q9BRP9 147 aa3.96□□□□□ -1.78
VPS52-219ENST00000493379 VAMP8Q9BV40 100 aa3.96□□□□□ -1.78
VPS52-219ENST00000493379 A0A087X002 238 aa3.95□□□□□ -1.78
VPS52-219ENST00000493379 ETDCA0A1B0GVM5 59 aa3.95□□□□□ -1.78
VPS52-219ENST00000493379 CRYGAP11844 174 aa3.95□□□□□ -1.78
VPS52-219ENST00000493379 ELOF1P60002 83 aaKnown RBP3.95□□□□□ -1.78
VPS52-219ENST00000493379 PRAC1Q96KF2 57 aa3.95□□□□□ -1.78
VPS52-219ENST00000493379 SPRR4Q96PI1 79 aa3.95□□□□□ -1.78
VPS52-219ENST00000493379 ERC2-IT1O76042 136 aa3.94□□□□□ -1.78
VPS52-219ENST00000493379 SPRR1BP22528 89 aa3.94□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 59.7 ms