RNA–Protein interactions for RNA: ENST00000487354.1

MCF2L-228, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 3

Gene MCF2L, Length 553 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-228ENST00000487354 MAP1LC3CQ9BXW4 147 aa8.09□□□□□ -1.11
MCF2L-228ENST00000487354 NDUFC2O95298 119 aa8.08□□□□□ -1.12
MCF2L-228ENST00000487354 SOSTDC1Q6X4U4 206 aa8.08□□□□□ -1.12
MCF2L-228ENST00000487354 TRAPPC1Q9Y5R8 145 aa8.08□□□□□ -1.12
MCF2L-228ENST00000487354 FCGBPQ9Y6R7 5405 aaPredicted RBP8.07□□□□□ -1.12
MCF2L-228ENST00000487354 UQCC3Q6UW78 93 aa8.07□□□□□ -1.12
MCF2L-228ENST00000487354 S100A7L2Q5SY68 101 aa8.06□□□□□ -1.12
MCF2L-228ENST00000487354 C1orf195Q5TG92 126 aa8.05□□□□□ -1.12
MCF2L-228ENST00000487354 CD164Q04900 197 aa8.04□□□□□ -1.12
MCF2L-228ENST00000487354 Q5XG85 94 aa8.04□□□□□ -1.12
MCF2L-228ENST00000487354 KRTAP9-8Q9BYQ0 159 aa8.04□□□□□ -1.12
MCF2L-228ENST00000487354 H7C2G1 150 aa8.03□□□□□ -1.12
MCF2L-228ENST00000487354 LEPROTO15243 131 aa8.03□□□□□ -1.12
MCF2L-228ENST00000487354 C10orf91Q5T1B1 145 aa8.02□□□□□ -1.13
MCF2L-228ENST00000487354 RHEBQ15382 184 aa8.01□□□□□ -1.13
MCF2L-228ENST00000487354 J3QQQ9 107 aa8□□□□□ -1.13
MCF2L-228ENST00000487354 NPC2P61916 151 aa8□□□□□ -1.13
MCF2L-228ENST00000487354 ADAMTSL4-AS1Q5T5F5 129 aa8□□□□□ -1.13
MCF2L-228ENST00000487354 SLC25A34Q6PIV7 304 aa8□□□□□ -1.13
MCF2L-228ENST00000487354 CHCHD1Q96BP2 118 aaKnown RBP8□□□□□ -1.13
MCF2L-228ENST00000487354 MIEN1Q9BRT3 115 aa8□□□□□ -1.13
MCF2L-228ENST00000487354 LAMTOR3Q9UHA4 124 aa8□□□□□ -1.13
MCF2L-228ENST00000487354 A0A0G2JQZ4 141 aa7.98□□□□□ -1.13
MCF2L-228ENST00000487354 Q1RN00 199 aa7.98□□□□□ -1.13
MCF2L-228ENST00000487354 IFITM2Q01629 132 aa7.97□□□□□ -1.13
MCF2L-228ENST00000487354 SMIM29Q86T20 159 aa7.97□□□□□ -1.13
MCF2L-228ENST00000487354 COMMD7Q86VX2 200 aa7.97□□□□□ -1.13
MCF2L-228ENST00000487354 DHRS4-AS1Q9P1J3 65 aa7.97□□□□□ -1.13
MCF2L-228ENST00000487354 H0Y8G0 127 aa7.96□□□□□ -1.14
MCF2L-228ENST00000487354 NMUP48645 174 aa7.96□□□□□ -1.14
MCF2L-228ENST00000487354 PRO1933Q9H354 126 aa7.96□□□□□ -1.14
MCF2L-228ENST00000487354 A0A0J9YXY3 114 aa7.95□□□□□ -1.14
MCF2L-228ENST00000487354 CFC1P0CG37 223 aa7.95□□□□□ -1.14
MCF2L-228ENST00000487354 ELOF1P60002 83 aaKnown RBP7.94□□□□□ -1.14
MCF2L-228ENST00000487354 HINT1P49773 126 aaPredicted RBP7.93□□□□□ -1.14
MCF2L-228ENST00000487354 YPEL4Q96NS1 127 aa7.93□□□□□ -1.14
MCF2L-228ENST00000487354 LITAFQ99732 161 aa7.93□□□□□ -1.14
MCF2L-228ENST00000487354 LGALS3P17931 250 aaKnown RBP7.92□□□□□ -1.14
MCF2L-228ENST00000487354 LINC00310P59036 64 aa7.92□□□□□ -1.14
MCF2L-228ENST00000487354 PLNP26678 52 aa7.91□□□□□ -1.14
MCF2L-228ENST00000487354 Q6Q795 121 aa7.91□□□□□ -1.14
MCF2L-228ENST00000487354 KRTAP19-1Q8IUB9 90 aa7.91□□□□□ -1.14
MCF2L-228ENST00000487354 DEFB105AQ8NG35 78 aa7.91□□□□□ -1.14
MCF2L-228ENST00000487354 PMCHL2Q9BQD1 86 aa7.91□□□□□ -1.14
MCF2L-228ENST00000487354 TEX49A0A1B0GTD5 131 aa7.9□□□□□ -1.14
MCF2L-228ENST00000487354 SPANXCQ9NY87 97 aa7.9□□□□□ -1.14
MCF2L-228ENST00000487354 CBY1Q9Y3M2 126 aa7.9□□□□□ -1.14
MCF2L-228ENST00000487354 LCE2BO14633 110 aa7.89□□□□□ -1.15
MCF2L-228ENST00000487354 HSBP1O75506 76 aa7.89□□□□□ -1.15
MCF2L-228ENST00000487354 COX7BP24311 80 aa7.89□□□□□ -1.15
MCF2L-228ENST00000487354 AKR1D1P51857 326 aa7.89□□□□□ -1.15
MCF2L-228ENST00000487354 LINC00308Q8TCZ7 52 aa7.89□□□□□ -1.15
MCF2L-228ENST00000487354 IGLV5-48A0A075B6I7 105 aa7.88□□□□□ -1.15
MCF2L-228ENST00000487354 DPM2O94777 84 aa7.88□□□□□ -1.15
MCF2L-228ENST00000487354 HERVK_113P61574 105 aa7.88□□□□□ -1.15
MCF2L-228ENST00000487354 TAL2Q16559 108 aa7.88□□□□□ -1.15
MCF2L-228ENST00000487354 C6orf99Q4VX62 202 aa7.88□□□□□ -1.15
MCF2L-228ENST00000487354 OR13C6PQ8NH95 151 aa7.88□□□□□ -1.15
MCF2L-228ENST00000487354 SPANXDQ9BXN6 97 aa7.87□□□□□ -1.15
MCF2L-228ENST00000487354 LEPROTL1O95214 131 aa7.86□□□□□ -1.15
MCF2L-228ENST00000487354 IGKCP01834 107 aa7.86□□□□□ -1.15
MCF2L-228ENST00000487354 MT2AP02795 61 aa7.86□□□□□ -1.15
MCF2L-228ENST00000487354 SYNE2Q8WXH0 6885 aaKnown RBP7.84□□□□□ -1.15
MCF2L-228ENST00000487354 E9PLD3 99 aa7.84□□□□□ -1.15
MCF2L-228ENST00000487354 Q75L30 129 aa7.84□□□□□ -1.15
MCF2L-228ENST00000487354 MACF1Q9UPN3 7388 aaKnown RBP7.84□□□□□ -1.15
MCF2L-228ENST00000487354 SERF1AO75920 110 aa7.83□□□□□ -1.16
MCF2L-228ENST00000487354 MT1FP04733 61 aa7.82□□□□□ -1.16
MCF2L-228ENST00000487354 TIMM17BO60830 172 aa7.81□□□□□ -1.16
MCF2L-228ENST00000487354 TRBV7-6A0A0J9YX20 115 aa7.8□□□□□ -1.16
MCF2L-228ENST00000487354 TCL1BO95988 128 aa7.8□□□□□ -1.16
MCF2L-228ENST00000487354 OBSCN-AS1Q96MR7 158 aa7.8□□□□□ -1.16
MCF2L-228ENST00000487354 KRTAP9-3Q9BYQ3 159 aa7.8□□□□□ -1.16
MCF2L-228ENST00000487354 APOC3P02656 99 aa7.79□□□□□ -1.16
MCF2L-228ENST00000487354 ATP11AUNQ6ZP68 121 aa7.79□□□□□ -1.16
MCF2L-228ENST00000487354 FABP4P15090 132 aa7.78□□□□□ -1.16
MCF2L-228ENST00000487354 A0A1B0GWB2 263 aa7.77□□□□□ -1.17
MCF2L-228ENST00000487354 HSPB8Q9UJY1 196 aa7.77□□□□□ -1.17
MCF2L-228ENST00000487354 C20orf202A1L168 122 aa7.76□□□□□ -1.17
MCF2L-228ENST00000487354 SNAPINO95295 136 aa7.76□□□□□ -1.17
MCF2L-228ENST00000487354 PCP2Q8IVA1 136 aa7.76□□□□□ -1.17
MCF2L-228ENST00000487354 TTTY13Q9BZ97 58 aa7.76□□□□□ -1.17
MCF2L-228ENST00000487354 TRGC2P03986 189 aa7.75□□□□□ -1.17
MCF2L-228ENST00000487354 LINC00518Q8N0U6 118 aa7.75□□□□□ -1.17
MCF2L-228ENST00000487354 SVBPQ8N300 66 aa7.75□□□□□ -1.17
MCF2L-228ENST00000487354 TRBV7-7A0A0K0K1E9 115 aa7.72□□□□□ -1.17
MCF2L-228ENST00000487354 ZNF815PA8K554 130 aa7.71□□□□□ -1.18
MCF2L-228ENST00000487354 C20orf166-AS1Q96NR2 134 aa7.7□□□□□ -1.18
MCF2L-228ENST00000487354 IGFL1Q6UW32 110 aa7.69□□□□□ -1.18
MCF2L-228ENST00000487354 A8MUU9 505 aa7.68□□□□□ -1.18
MCF2L-228ENST00000487354 CLEC2BQ92478 149 aa7.67□□□□□ -1.18
MCF2L-228ENST00000487354 Q96NJ1 140 aa7.67□□□□□ -1.18
MCF2L-228ENST00000487354 A4D1N5 150 aa7.66□□□□□ -1.18
MCF2L-228ENST00000487354 SYS1-DBNDD2H3BUS1 97 aa7.66□□□□□ -1.18
MCF2L-228ENST00000487354 NDUFA5Q16718 116 aa7.66□□□□□ -1.18
MCF2L-228ENST00000487354 KRTAP19-6Q3LI70 58 aa7.65□□□□□ -1.18
MCF2L-228ENST00000487354 LINC01545Q5VT33 79 aa7.65□□□□□ -1.18
MCF2L-228ENST00000487354 SMIM11BQ8TCY0 68 aa7.65□□□□□ -1.18
MCF2L-228ENST00000487354 A6NDN8 102 aa7.64□□□□□ -1.19
MCF2L-228ENST00000487354 KRTAP16-1A8MUX0 517 aa7.64□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 52.5 ms