RNA–Protein interactions for RNA: ENST00000481991.1

USP54-213, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 3

Gene USP54, Length 403 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-213ENST00000481991 ANKRD39Q53RE8 183 aa3.97□□□□□ -1.77
USP54-213ENST00000481991 LCE4AQ5TA78 99 aa3.97□□□□□ -1.77
USP54-213ENST00000481991 SLC25A34Q6PIV7 304 aa3.97□□□□□ -1.77
USP54-213ENST00000481991 FA2HQ7L5A8 372 aa3.97□□□□□ -1.77
USP54-213ENST00000481991 DEFB105AQ8NG35 78 aa3.97□□□□□ -1.77
USP54-213ENST00000481991 KRTAP4-2Q9BYR5 136 aa3.97□□□□□ -1.77
USP54-213ENST00000481991 TRBV20-1A0A075B6N2 111 aa3.96□□□□□ -1.78
USP54-213ENST00000481991 MT2AP02795 61 aa3.96□□□□□ -1.78
USP54-213ENST00000481991 HINT1P49773 126 aaPredicted RBP3.96□□□□□ -1.78
USP54-213ENST00000481991 KRTAP6-3Q3LI67 103 aa3.96□□□□□ -1.78
USP54-213ENST00000481991 C1orf195Q5TG92 126 aa3.96□□□□□ -1.78
USP54-213ENST00000481991 TAL2Q16559 108 aa3.95□□□□□ -1.78
USP54-213ENST00000481991 Q1RN00 199 aa3.95□□□□□ -1.78
USP54-213ENST00000481991 BAGE3Q86Y29 109 aa3.95□□□□□ -1.78
USP54-213ENST00000481991 PCP2Q8IVA1 136 aa3.95□□□□□ -1.78
USP54-213ENST00000481991 TCTE3Q8IZS6 198 aa3.95□□□□□ -1.78
USP54-213ENST00000481991 PRO1933Q9H354 126 aa3.95□□□□□ -1.78
USP54-213ENST00000481991 FAM236DA0A1B0GTK5 79 aa3.94□□□□□ -1.78
USP54-213ENST00000481991 C11orf86A6NJI1 115 aa3.94□□□□□ -1.78
USP54-213ENST00000481991 MT-ND4LP03901 98 aa3.94□□□□□ -1.78
USP54-213ENST00000481991 FAM236CP0DP71 79 aa3.94□□□□□ -1.78
USP54-213ENST00000481991 MAP1LC3CQ9BXW4 147 aa3.94□□□□□ -1.78
USP54-213ENST00000481991 TRAV23DV6A0A075B6W5 121 aa3.93□□□□□ -1.78
USP54-213ENST00000481991 LINC00587B1AMM8 73 aa3.93□□□□□ -1.78
USP54-213ENST00000481991 MT1FP04733 61 aa3.93□□□□□ -1.78
USP54-213ENST00000481991 S100A6P06703 90 aa3.93□□□□□ -1.78
USP54-213ENST00000481991 AKR1D1P51857 326 aa3.93□□□□□ -1.78
USP54-213ENST00000481991 A0A0G2JQZ4 141 aa3.92□□□□□ -1.78
USP54-213ENST00000481991 SMIM29Q86T20 159 aa3.92□□□□□ -1.78
USP54-213ENST00000481991 ANAPC16Q96DE5 110 aa3.92□□□□□ -1.78
USP54-213ENST00000481991 MIEN1Q9BRT3 115 aa3.92□□□□□ -1.78
USP54-213ENST00000481991 KRTAP9-3Q9BYQ3 159 aa3.92□□□□□ -1.78
USP54-213ENST00000481991 ZNF73O43830 326 aaPredicted RBP3.91□□□□□ -1.78
USP54-213ENST00000481991 LGALS3P17931 250 aaKnown RBP3.91□□□□□ -1.78
USP54-213ENST00000481991 HERV-K104P63124 156 aa3.91□□□□□ -1.78
USP54-213ENST00000481991 CD164Q04900 197 aa3.91□□□□□ -1.78
USP54-213ENST00000481991 PMCHL1Q16048 86 aa3.91□□□□□ -1.78
USP54-213ENST00000481991 OBSCN-AS1Q96MR7 158 aa3.91□□□□□ -1.78
USP54-213ENST00000481991 TRBV10-2A0A0K0K1G8 114 aa3.9□□□□□ -1.79
USP54-213ENST00000481991 MYMXA0A1B0GTQ4 84 aa3.9□□□□□ -1.79
USP54-213ENST00000481991 TMEM223A0PJW6 202 aa3.9□□□□□ -1.79
USP54-213ENST00000481991 TCL1BO95988 128 aa3.9□□□□□ -1.79
USP54-213ENST00000481991 NPC2P61916 151 aa3.9□□□□□ -1.79
USP54-213ENST00000481991 C10orf91Q5T1B1 145 aa3.9□□□□□ -1.79
USP54-213ENST00000481991 OR13C6PQ8NH95 151 aa3.9□□□□□ -1.79
USP54-213ENST00000481991 SPANXB1Q9NS25 103 aaPredicted RBP3.9□□□□□ -1.79
USP54-213ENST00000481991 C5orf52A6NGY3 159 aa3.89□□□□□ -1.79
USP54-213ENST00000481991 FABP9Q0Z7S8 132 aa3.89□□□□□ -1.79
USP54-213ENST00000481991 KRTAP20-1Q3LI63 56 aa3.89□□□□□ -1.79
USP54-213ENST00000481991 KRTAP19-6Q3LI70 58 aa3.89□□□□□ -1.79
USP54-213ENST00000481991 COMMD7Q86VX2 200 aa3.89□□□□□ -1.79
USP54-213ENST00000481991 LINC01546A6NGU7 62 aa3.88□□□□□ -1.79
USP54-213ENST00000481991 HBDP02042 147 aa3.88□□□□□ -1.79
USP54-213ENST00000481991 SPRR1BP22528 89 aa3.88□□□□□ -1.79
USP54-213ENST00000481991 Q96NJ1 140 aa3.88□□□□□ -1.79
USP54-213ENST00000481991 C20orf166-AS1Q96NR2 134 aa3.88□□□□□ -1.79
USP54-213ENST00000481991 KRTAP4-11Q9BYQ6 195 aa3.88□□□□□ -1.79
USP54-213ENST00000481991 DHRS4-AS1Q9P1J3 65 aa3.88□□□□□ -1.79
USP54-213ENST00000481991 TEX49A0A1B0GTD5 131 aa3.86□□□□□ -1.79
USP54-213ENST00000481991 LINC00614P0C842 121 aa3.86□□□□□ -1.79
USP54-213ENST00000481991 S100A1P23297 94 aa3.86□□□□□ -1.79
USP54-213ENST00000481991 RHEBQ15382 184 aa3.86□□□□□ -1.79
USP54-213ENST00000481991 Q5XG85 94 aa3.86□□□□□ -1.79
USP54-213ENST00000481991 Q75L30 129 aa3.86□□□□□ -1.79
USP54-213ENST00000481991 CBY1Q9Y3M2 126 aa3.86□□□□□ -1.79
USP54-213ENST00000481991 A0A096LNJ9 63 aa3.84□□□□□ -1.79
USP54-213ENST00000481991 H0Y8G0 127 aa3.84□□□□□ -1.79
USP54-213ENST00000481991 COX7BP24311 80 aa3.84□□□□□ -1.79
USP54-213ENST00000481991 LOC107984156A0A0G2JMH3 177 aa3.83□□□□□ -1.8
USP54-213ENST00000481991 NDUFC2O95298 119 aa3.83□□□□□ -1.8
USP54-213ENST00000481991 S100PP25815 95 aa3.83□□□□□ -1.8
USP54-213ENST00000481991 NDUFA5Q16718 116 aa3.83□□□□□ -1.8
USP54-213ENST00000481991 ARL17AQ8IVW1 177 aa3.83□□□□□ -1.8
USP54-213ENST00000481991 SEC11CQ9BY50 192 aa3.83□□□□□ -1.8
USP54-213ENST00000481991 RBM12B-AS1Q9P1G2 102 aa3.83□□□□□ -1.8
USP54-213ENST00000481991 NEBP20929 6669 aa3.82□□□□□ -1.8
USP54-213ENST00000481991 LOC105371267A0A1B0GV96 52 aa3.82□□□□□ -1.8
USP54-213ENST00000481991 C6orf99Q4VX62 202 aa3.82□□□□□ -1.8
USP54-213ENST00000481991 RPS10P5Q9NQ39 176 aa3.82□□□□□ -1.8
USP54-213ENST00000481991 IFITM2Q01629 132 aa3.81□□□□□ -1.8
USP54-213ENST00000481991 IFI27L1Q96BM0 104 aa3.81□□□□□ -1.8
USP54-213ENST00000481991 LEPROTO15243 131 aa3.8□□□□□ -1.8
USP54-213ENST00000481991 URB1-AS1Q96HZ7 61 aa3.8□□□□□ -1.8
USP54-213ENST00000481991 TRAV12-1A0A0B4J245 112 aa3.79□□□□□ -1.8
USP54-213ENST00000481991 F8WEM9 126 aa3.79□□□□□ -1.8
USP54-213ENST00000481991 TSPEAR-AS2P59090 65 aa3.79□□□□□ -1.8
USP54-213ENST00000481991 IGFL1Q6UW32 110 aa3.79□□□□□ -1.8
USP54-213ENST00000481991 SOSTDC1Q6X4U4 206 aa3.79□□□□□ -1.8
USP54-213ENST00000481991 Q6ZVH6 145 aa3.79□□□□□ -1.8
USP54-213ENST00000481991 J3QQQ9 107 aa3.78□□□□□ -1.8
USP54-213ENST00000481991 ELOF1P60002 83 aaKnown RBP3.78□□□□□ -1.8
USP54-213ENST00000481991 COX19Q49B96 90 aa3.78□□□□□ -1.8
USP54-213ENST00000481991 ADAMTSL4-AS1Q5T5F5 129 aa3.78□□□□□ -1.8
USP54-213ENST00000481991 C18orf32Q8TCD1 76 aa3.78□□□□□ -1.8
USP54-213ENST00000481991 TRAPPC1Q9Y5R8 145 aa3.78□□□□□ -1.8
USP54-213ENST00000481991 Q8N9P0 234 aaPredicted RBP3.77□□□□□ -1.81
USP54-213ENST00000481991 LST1O00453 97 aa3.76□□□□□ -1.81
USP54-213ENST00000481991 HERVK_113P61574 105 aa3.76□□□□□ -1.81
USP54-213ENST00000481991 LCE5AQ5TCM9 118 aa3.76□□□□□ -1.81
USP54-213ENST00000481991 LINC00518Q8N0U6 118 aa3.76□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms