RNA–Protein interactions for RNA: ENST00000476169.1

VPS13D-207, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 3

Gene VPS13D, Length 475 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-207ENST00000476169 ZGRF1Q86YA3 2104 aa1.72□□□□□ -2.13
VPS13D-207ENST00000476169 TRBV30A0A0K0K1B3 111 aa1.72□□□□□ -2.13
VPS13D-207ENST00000476169 NAP1L6A6NFF2 107 aa1.72□□□□□ -2.13
VPS13D-207ENST00000476169 MT-ATP8P03928 68 aa1.72□□□□□ -2.13
VPS13D-207ENST00000476169 ELOF1P60002 83 aaKnown RBP1.72□□□□□ -2.13
VPS13D-207ENST00000476169 DEFA5Q01523 94 aa1.72□□□□□ -2.13
VPS13D-207ENST00000476169 MINOS1Q5TGZ0 78 aa1.72□□□□□ -2.13
VPS13D-207ENST00000476169 NF1P21359 2839 aa1.72□□□□□ -2.13
VPS13D-207ENST00000476169 ITPR2Q14571 2701 aa1.71□□□□□ -2.14
VPS13D-207ENST00000476169 RYR2Q92736 4967 aa1.71□□□□□ -2.14
VPS13D-207ENST00000476169 JMJD1CQ15652 2540 aa1.71□□□□□ -2.14
VPS13D-207ENST00000476169 RYR3Q15413 4870 aa1.71□□□□□ -2.14
VPS13D-207ENST00000476169 TRAV1-2A0A0B4J238 106 aa1.71□□□□□ -2.14
VPS13D-207ENST00000476169 hADV29S1A0JD25 119 aa1.71□□□□□ -2.14
VPS13D-207ENST00000476169 CRYM-AS1A6NIL9 109 aa1.71□□□□□ -2.14
VPS13D-207ENST00000476169 G3V318 75 aa1.71□□□□□ -2.14
VPS13D-207ENST00000476169 PPP1R17O96001 155 aa1.71□□□□□ -2.14
VPS13D-207ENST00000476169 SAA2P0DJI9 122 aaPredicted RBP1.71□□□□□ -2.14
VPS13D-207ENST00000476169 DEFB136Q30KP8 78 aa1.71□□□□□ -2.14
VPS13D-207ENST00000476169 PMCHL2Q9BQD1 86 aa1.71□□□□□ -2.14
VPS13D-207ENST00000476169 FAM103A1Q9BTL3 118 aaKnown RBP1.71□□□□□ -2.14
VPS13D-207ENST00000476169 MANBALQ9NQG1 85 aa1.71□□□□□ -2.14
VPS13D-207ENST00000476169 UTP20O75691 2785 aaKnown RBP1.71□□□□□ -2.14
VPS13D-207ENST00000476169 SONP18583 2426 aaKnown RBP1.71□□□□□ -2.14
VPS13D-207ENST00000476169 HUWE1Q7Z6Z7 4374 aaKnown RBP1.71□□□□□ -2.14
VPS13D-207ENST00000476169 CADP27708 2225 aa1.71□□□□□ -2.14
VPS13D-207ENST00000476169 FBN1P35555 2871 aaKnown RBP1.7□□□□□ -2.14
VPS13D-207ENST00000476169 SACSQ9NZJ4 4579 aa1.7□□□□□ -2.14
VPS13D-207ENST00000476169 C2CD3Q4AC94 2353 aa1.7□□□□□ -2.14
VPS13D-207ENST00000476169 TRBV7-3A0A075B6L6 115 aa1.7□□□□□ -2.14
VPS13D-207ENST00000476169 IGKV2D-29A0A075B6S2 120 aaPredicted RBP1.7□□□□□ -2.14
VPS13D-207ENST00000476169 PRH1P02810 166 aa1.7□□□□□ -2.14
VPS13D-207ENST00000476169 ZNF137PP52743 207 aa1.7□□□□□ -2.14
VPS13D-207ENST00000476169 KLKP1Q107X0 134 aa1.7□□□□□ -2.14
VPS13D-207ENST00000476169 S100A13Q99584 98 aa1.7□□□□□ -2.14
VPS13D-207ENST00000476169 FXYD6Q9H0Q3 95 aa1.7□□□□□ -2.14
VPS13D-207ENST00000476169 ITPR3Q14573 2671 aa1.7□□□□□ -2.14
VPS13D-207ENST00000476169 DNAJC13O75165 2243 aa1.7□□□□□ -2.14
VPS13D-207ENST00000476169 TACC2O95359 2948 aa1.7□□□□□ -2.14
VPS13D-207ENST00000476169 BIRC6Q9NR09 4857 aa1.69□□□□□ -2.14
VPS13D-207ENST00000476169 PCNX1Q96RV3 2341 aa1.69□□□□□ -2.14
VPS13D-207ENST00000476169 ZFHX3Q15911 3703 aa1.69□□□□□ -2.14
VPS13D-207ENST00000476169 STAB1Q9NY15 2570 aa1.69□□□□□ -2.14
VPS13D-207ENST00000476169 CELSR2Q9HCU4 2923 aa1.69□□□□□ -2.14
VPS13D-207ENST00000476169 MED13LQ71F56 2210 aa1.69□□□□□ -2.14
VPS13D-207ENST00000476169 K7EIL1 84 aa1.69□□□□□ -2.14
VPS13D-207ENST00000476169 PDCD5O14737 125 aa1.69□□□□□ -2.14
VPS13D-207ENST00000476169 NDUFA3O95167 84 aa1.69□□□□□ -2.14
VPS13D-207ENST00000476169 APELAP0DMC3 54 aa1.69□□□□□ -2.14
VPS13D-207ENST00000476169 KRTAP12-3P60328 96 aa1.69□□□□□ -2.14
VPS13D-207ENST00000476169 SEC11AP67812 179 aa1.69□□□□□ -2.14
VPS13D-207ENST00000476169 WFDC9Q8NEX5 89 aa1.69□□□□□ -2.14
VPS13D-207ENST00000476169 FAM213BQ8TBF2 198 aa1.69□□□□□ -2.14
VPS13D-207ENST00000476169 MGST2Q99735 147 aa1.69□□□□□ -2.14
VPS13D-207ENST00000476169 TMEM14BQ9NUH8 114 aa1.69□□□□□ -2.14
VPS13D-207ENST00000476169 ANK2Q01484 3957 aa1.69□□□□□ -2.14
VPS13D-207ENST00000476169 LRBAP50851 2863 aa1.68□□□□□ -2.14
VPS13D-207ENST00000476169 HRNRQ86YZ3 2850 aaPredicted RBP1.68□□□□□ -2.14
VPS13D-207ENST00000476169 FLNAP21333 2647 aaKnown RBP1.68□□□□□ -2.14
VPS13D-207ENST00000476169 A0A087WXM4 84 aa1.68□□□□□ -2.14
VPS13D-207ENST00000476169 CHKB-CPT1BH3BT56 60 aa1.68□□□□□ -2.14
VPS13D-207ENST00000476169 SPAG11BQ08648 103 aa1.68□□□□□ -2.14
VPS13D-207ENST00000476169 LCE1CQ5T751 118 aa1.68□□□□□ -2.14
VPS13D-207ENST00000476169 LCE1BQ5T7P3 118 aa1.68□□□□□ -2.14
VPS13D-207ENST00000476169 SPAG11AQ6PDA7 123 aa1.68□□□□□ -2.14
VPS13D-207ENST00000476169 KRTAP4-3Q9BYR4 195 aa1.68□□□□□ -2.14
VPS13D-207ENST00000476169 ABRACLQ9P1F3 81 aa1.68□□□□□ -2.14
VPS13D-207ENST00000476169 UQCR10Q9UDW1 63 aa1.68□□□□□ -2.14
VPS13D-207ENST00000476169 CACNA1CQ13936 2221 aa1.68□□□□□ -2.14
VPS13D-207ENST00000476169 FBN3Q75N90 2809 aa1.68□□□□□ -2.14
VPS13D-207ENST00000476169 DYNC1H1Q14204 4646 aaKnown RBP1.67□□□□□ -2.14
VPS13D-207ENST00000476169 DYNC2H1Q8NCM8 4307 aaKnown RBP1.67□□□□□ -2.14
VPS13D-207ENST00000476169 ATRQ13535 2644 aa1.67□□□□□ -2.14
VPS13D-207ENST00000476169 CENPEQ02224 2701 aa1.67□□□□□ -2.14
VPS13D-207ENST00000476169 Q0VG73 95 aa1.67□□□□□ -2.14
VPS13D-207ENST00000476169 SPINK9Q5DT21 86 aa1.67□□□□□ -2.14
VPS13D-207ENST00000476169 LINC00575Q6W349 94 aa1.67□□□□□ -2.14
VPS13D-207ENST00000476169 V9GYH0 126 aa1.67□□□□□ -2.14
VPS13D-207ENST00000476169 SVEP1Q4LDE5 3571 aa1.67□□□□□ -2.14
VPS13D-207ENST00000476169 SETD2Q9BYW2 2564 aaPredicted RBP1.67□□□□□ -2.14
VPS13D-207ENST00000476169 PLECQ15149 4684 aaKnown RBP1.67□□□□□ -2.14
VPS13D-207ENST00000476169 CUBNO60494 3623 aa1.66□□□□□ -2.14
VPS13D-207ENST00000476169 PRKDCP78527 4128 aaKnown RBP1.66□□□□□ -2.14
VPS13D-207ENST00000476169 TLN2Q9Y4G6 2542 aa1.66□□□□□ -2.14
VPS13D-207ENST00000476169 IGLC7A0M8Q6 106 aa1.66□□□□□ -2.14
VPS13D-207ENST00000476169 FAUP35544 74 aaKnown RBP1.66□□□□□ -2.14
VPS13D-207ENST00000476169 WT1-ASQ06250 92 aa1.66□□□□□ -2.14
VPS13D-207ENST00000476169 TMEM167AQ8TBQ9 72 aa1.66□□□□□ -2.14
VPS13D-207ENST00000476169 LENEPQ9Y5L5 61 aa1.66□□□□□ -2.14
VPS13D-207ENST00000476169 ABCA1O95477 2261 aa1.66□□□□□ -2.14
VPS13D-207ENST00000476169 PRRC2CQ9Y520 2896 aaKnown RBP1.66□□□□□ -2.14
VPS13D-207ENST00000476169 NSD1Q96L73 2696 aaPredicted RBP1.65□□□□□ -2.14
VPS13D-207ENST00000476169 DCHS2Q6V1P9 2916 aa1.65□□□□□ -2.14
VPS13D-207ENST00000476169 KMT2CQ8NEZ4 4911 aaKnown RBP1.65□□□□□ -2.15
VPS13D-207ENST00000476169 K7EIM0 57 aa1.65□□□□□ -2.15
VPS13D-207ENST00000476169 TRAPPC2P0DI81 140 aa1.65□□□□□ -2.15
VPS13D-207ENST00000476169 TRAPPC2BP0DI82 140 aa1.65□□□□□ -2.15
VPS13D-207ENST00000476169 PLGLAQ15195 96 aa1.65□□□□□ -2.15
VPS13D-207ENST00000476169 SFTA2Q6UW10 78 aa1.65□□□□□ -2.15
VPS13D-207ENST00000476169 Q6ZSA8 131 aa1.65□□□□□ -2.15
Retrieved 100 of 20,778 RNA–protein pairs in 65.9 ms