RNA–Protein interactions for RNA: ENST00000475873.2

USP4-209, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 536 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-209ENST00000475873 ZNF56Q15929 161 aa2.58□□□□□ -2
USP4-209ENST00000475873 ETDBQ3ZM63 59 aa2.58□□□□□ -2
USP4-209ENST00000475873 TOMM5Q8N4H5 51 aa2.58□□□□□ -2
USP4-209ENST00000475873 DSCR8Q96T75 97 aa2.58□□□□□ -2
USP4-209ENST00000475873 KRTAP4-11Q9BYQ6 195 aa2.58□□□□□ -2
USP4-209ENST00000475873 TRAV9-1A0A075B6T8 112 aa2.57□□□□□ -2
USP4-209ENST00000475873 ZNF727A8MUV8 499 aa2.57□□□□□ -2
USP4-209ENST00000475873 KRTAP2-3P0C7H8 128 aa2.57□□□□□ -2
USP4-209ENST00000475873 LGALS3P17931 250 aaKnown RBP2.57□□□□□ -2
USP4-209ENST00000475873 COX6B2Q6YFQ2 88 aa2.57□□□□□ -2
USP4-209ENST00000475873 TMEM136Q6ZRR5 245 aa2.57□□□□□ -2
USP4-209ENST00000475873 C18orf32Q8TCD1 76 aa2.57□□□□□ -2
USP4-209ENST00000475873 SMIM4Q8WVI0 70 aa2.57□□□□□ -2
USP4-209ENST00000475873 NPCDR1Q9BY65 106 aa2.57□□□□□ -2
USP4-209ENST00000475873 KRTAP2-4Q9BYR9 128 aa2.57□□□□□ -2
USP4-209ENST00000475873 LOC389332A0A1B0GUA5 103 aa2.56□□□□□ -2
USP4-209ENST00000475873 H3BT86 120 aa2.56□□□□□ -2
USP4-209ENST00000475873 TMEM256-PLSCR3K7ERE1 68 aa2.56□□□□□ -2
USP4-209ENST00000475873 K7ERJ3 54 aa2.56□□□□□ -2
USP4-209ENST00000475873 M0QY20 66 aa2.56□□□□□ -2
USP4-209ENST00000475873 ATOX1O00244 68 aa2.56□□□□□ -2
USP4-209ENST00000475873 SSBP1Q04837 148 aaKnown RBP2.56□□□□□ -2
USP4-209ENST00000475873 FAM229BQ4G0N7 80 aa2.56□□□□□ -2
USP4-209ENST00000475873 ORMDL2Q53FV1 153 aa2.56□□□□□ -2
USP4-209ENST00000475873 C10orf25Q5T742 122 aa2.56□□□□□ -2
USP4-209ENST00000475873 PRNTQ86SH4 94 aa2.56□□□□□ -2
USP4-209ENST00000475873 KRTAP13-1Q8IUC0 172 aa2.56□□□□□ -2
USP4-209ENST00000475873 AMN1Q8IY45 258 aa2.56□□□□□ -2
USP4-209ENST00000475873 PGLYRP4Q96LB8 373 aa2.56□□□□□ -2
USP4-209ENST00000475873 CAMK2N2Q96S95 79 aa2.56□□□□□ -2
USP4-209ENST00000475873 TMSB15BA0A087X1C1 80 aa2.55□□□□□ -2
USP4-209ENST00000475873 TRBV7-7A0A0K0K1E9 115 aa2.55□□□□□ -2
USP4-209ENST00000475873 LINC00959A0A1B0GUT2 108 aa2.55□□□□□ -2
USP4-209ENST00000475873 C19orf71A6NCJ1 209 aa2.55□□□□□ -2
USP4-209ENST00000475873 E9PLD3 99 aa2.55□□□□□ -2
USP4-209ENST00000475873 LST1O00453 97 aa2.55□□□□□ -2
USP4-209ENST00000475873 IGKCP01834 107 aa2.55□□□□□ -2
USP4-209ENST00000475873 MP68P56378 58 aa2.55□□□□□ -2
USP4-209ENST00000475873 C9orf129Q5T035 196 aaKnown RBP2.55□□□□□ -2
USP4-209ENST00000475873 ZC2HC1BQ5TFG8 222 aa2.55□□□□□ -2
USP4-209ENST00000475873 LINC01545Q5VT33 79 aa2.55□□□□□ -2
USP4-209ENST00000475873 FAM19A3Q7Z5A8 133 aa2.55□□□□□ -2
USP4-209ENST00000475873 TEN1Q86WV5 123 aa2.55□□□□□ -2
USP4-209ENST00000475873 TIMM17AQ99595 171 aa2.55□□□□□ -2
USP4-209ENST00000475873 MANBALQ9NQG1 85 aa2.55□□□□□ -2
USP4-209ENST00000475873 TRBV20OR9-2A0A075B6H5 130 aa2.54□□□□□ -2
USP4-209ENST00000475873 IGKV2D-29A0A075B6S2 120 aaPredicted RBP2.54□□□□□ -2
USP4-209ENST00000475873 PIGBOS1A0A0B4J2F0 54 aa2.54□□□□□ -2
USP4-209ENST00000475873 IGKV2-29A2NJV5 120 aaPredicted RBP2.54□□□□□ -2
USP4-209ENST00000475873 COX7A2LO14548 114 aa2.54□□□□□ -2
USP4-209ENST00000475873 NUPR1O60356 82 aa2.54□□□□□ -2
USP4-209ENST00000475873 SH2D1AO60880 128 aa2.54□□□□□ -2
USP4-209ENST00000475873 SMIM13P0DJ93 91 aa2.54□□□□□ -2
USP4-209ENST00000475873 ATP5EP56381 51 aaPredicted RBP2.54□□□□□ -2
USP4-209ENST00000475873 LCA10Q71F78 164 aa2.54□□□□□ -2
USP4-209ENST00000475873 TOMM6Q96B49 74 aa2.54□□□□□ -2
USP4-209ENST00000475873 TP73-AS1Q9UF72 201 aa2.54□□□□□ -2
USP4-209ENST00000475873 ARL2-SNX15V9GYD0 113 aa2.54□□□□□ -2
USP4-209ENST00000475873 IGKV2D-26A0A0A0MRZ7 120 aa2.53□□□□□ -2
USP4-209ENST00000475873 hADV29S1A0JD25 119 aa2.53□□□□□ -2
USP4-209ENST00000475873 A8MUN3 132 aa2.53□□□□□ -2
USP4-209ENST00000475873 BCE1O60756 84 aa2.53□□□□□ -2
USP4-209ENST00000475873 SERF1AO75920 110 aa2.53□□□□□ -2
USP4-209ENST00000475873 TCL1BO95988 128 aa2.53□□□□□ -2
USP4-209ENST00000475873 TLX1NBP0CAT3 122 aa2.53□□□□□ -2
USP4-209ENST00000475873 RPL28P46779 137 aaKnown RBP2.53□□□□□ -2
USP4-209ENST00000475873 MRPS36P82909 103 aaKnown RBP2.53□□□□□ -2
USP4-209ENST00000475873 RPL7L1Q6DKI1 246 aaKnown RBP2.53□□□□□ -2
USP4-209ENST00000475873 BAGE3Q86Y29 109 aa2.53□□□□□ -2
USP4-209ENST00000475873 BAGE2Q86Y30 109 aa2.53□□□□□ -2
USP4-209ENST00000475873 PCP2Q8IVA1 136 aa2.53□□□□□ -2
USP4-209ENST00000475873 TMEM252Q8N6L7 170 aa2.53□□□□□ -2
USP4-209ENST00000475873 DAND5Q8N907 189 aa2.53□□□□□ -2
USP4-209ENST00000475873 C6orf48Q9UBA6 75 aa2.53□□□□□ -2
USP4-209ENST00000475873 PRO0461Q9UI25 63 aa2.53□□□□□ -2
USP4-209ENST00000475873 EPDR1Q9UM22 224 aa2.53□□□□□ -2
USP4-209ENST00000475873 TRAPPC1Q9Y5R8 145 aa2.53□□□□□ -2
USP4-209ENST00000475873 IGHV3OR16-9A0A0B4J2B5 98 aa2.52□□□□□ -2.01
USP4-209ENST00000475873 TRBV27A0A0K0K1C4 114 aa2.52□□□□□ -2.01
USP4-209ENST00000475873 C3orf79P0CE67 100 aa2.52□□□□□ -2.01
USP4-209ENST00000475873 UBE2G1P62253 170 aa2.52□□□□□ -2.01
USP4-209ENST00000475873 RPL23P62829 140 aaKnown RBP2.52□□□□□ -2.01
USP4-209ENST00000475873 HBBP68871 147 aa2.52□□□□□ -2.01
USP4-209ENST00000475873 C6orf99Q4VX62 202 aa2.52□□□□□ -2.01
USP4-209ENST00000475873 SUMO4Q6EEV6 95 aa2.52□□□□□ -2.01
USP4-209ENST00000475873 UNQ6190/PRO20217Q6UXQ8 127 aa2.52□□□□□ -2.01
USP4-209ENST00000475873 MRPL35Q9NZE8 188 aaKnown RBP2.52□□□□□ -2.01
USP4-209ENST00000475873 UBE2D4Q9Y2X8 147 aa2.52□□□□□ -2.01
USP4-209ENST00000475873 H0YIZ8 118 aa2.51□□□□□ -2.01
USP4-209ENST00000475873 M0R378 163 aa2.51□□□□□ -2.01
USP4-209ENST00000475873 PSPHP1O15172 72 aa2.51□□□□□ -2.01
USP4-209ENST00000475873 TIMM17BO60830 172 aa2.51□□□□□ -2.01
USP4-209ENST00000475873 SRP19P09132 144 aaKnown RBP2.51□□□□□ -2.01
USP4-209ENST00000475873 SCGB1C2P0DMR2 95 aa2.51□□□□□ -2.01
USP4-209ENST00000475873 COX8AP10176 69 aa2.51□□□□□ -2.01
USP4-209ENST00000475873 KRTAP5-9P26371 169 aa2.51□□□□□ -2.01
USP4-209ENST00000475873 HERVK_113P61574 105 aa2.51□□□□□ -2.01
USP4-209ENST00000475873 SPAG11BQ08648 103 aa2.51□□□□□ -2.01
USP4-209ENST00000475873 SPAG11AQ6PDA7 123 aa2.51□□□□□ -2.01
USP4-209ENST00000475873 Q86TA4 180 aa2.51□□□□□ -2.01
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms