RNA–Protein interactions for RNA: ENST00000473258.1

COL6A3-210, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 5,433 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-210ENST00000473258 A6NN06 94 aa5.93□□□□□ -1.46
COL6A3-210ENST00000473258 CENPFP49454 3210 aa5.93□□□□□ -1.46
COL6A3-210ENST00000473258 RTL8CO15255 209 aa5.92□□□□□ -1.46
COL6A3-210ENST00000473258 LINC00483Q53H64 154 aa5.92□□□□□ -1.46
COL6A3-210ENST00000473258 IGLV5-48A0A075B6I7 105 aa5.92□□□□□ -1.46
COL6A3-210ENST00000473258 PKD1L2Q7Z442 2459 aa5.91□□□□□ -1.46
COL6A3-210ENST00000473258 FNDC1Q4ZHG4 1894 aaPredicted RBP5.91□□□□□ -1.46
COL6A3-210ENST00000473258 IGLV5-52A0A0A0MRZ9 124 aa5.91□□□□□ -1.46
COL6A3-210ENST00000473258 IGLV7-43P04211 117 aa5.89□□□□□ -1.47
COL6A3-210ENST00000473258 KIAA1549LQ6ZVL6 1849 aa5.89□□□□□ -1.47
COL6A3-210ENST00000473258 DSCR10P59022 87 aa5.89□□□□□ -1.47
COL6A3-210ENST00000473258 MUC6Q6W4X9 2439 aa5.89□□□□□ -1.47
COL6A3-210ENST00000473258 IGLV1-50A0A075B6I6 118 aa5.88□□□□□ -1.47
COL6A3-210ENST00000473258 TLN1Q9Y490 2541 aaKnown RBP5.88□□□□□ -1.47
COL6A3-210ENST00000473258 HRES1P13985 223 aa5.88□□□□□ -1.47
COL6A3-210ENST00000473258 LAMA3Q16787 3333 aa5.88□□□□□ -1.47
COL6A3-210ENST00000473258 NDUFAF8A1L188 74 aa5.88□□□□□ -1.47
COL6A3-210ENST00000473258 C15orf56Q8N910 161 aa5.88□□□□□ -1.47
COL6A3-210ENST00000473258 LRP4O75096 1905 aa5.87□□□□□ -1.47
COL6A3-210ENST00000473258 MGAMO43451 1857 aa5.87□□□□□ -1.47
COL6A3-210ENST00000473258 NAV2Q8IVL1 2488 aa5.86□□□□□ -1.47
COL6A3-210ENST00000473258 A0A0G2JQZ4 141 aa5.85□□□□□ -1.47
COL6A3-210ENST00000473258 A0A1W2PNN7 141 aa5.85□□□□□ -1.47
COL6A3-210ENST00000473258 Q8N1X5 172 aa5.85□□□□□ -1.47
COL6A3-210ENST00000473258 DNAH10OSP0CZ25 163 aa5.85□□□□□ -1.47
COL6A3-210ENST00000473258 ROMO1P60602 79 aa5.84□□□□□ -1.47
COL6A3-210ENST00000473258 COX6B2Q6YFQ2 88 aa5.84□□□□□ -1.47
COL6A3-210ENST00000473258 ZFYVE26Q68DK2 2539 aa5.83□□□□□ -1.48
COL6A3-210ENST00000473258 THSD7BQ9C0I4 1608 aa5.82□□□□□ -1.48
COL6A3-210ENST00000473258 COL4A6Q14031 1691 aa5.82□□□□□ -1.48
COL6A3-210ENST00000473258 SPRR4Q96PI1 79 aa5.81□□□□□ -1.48
COL6A3-210ENST00000473258 VCANP13611 3396 aa5.81□□□□□ -1.48
COL6A3-210ENST00000473258 KRTAP25-1Q3LHN0 102 aa5.81□□□□□ -1.48
COL6A3-210ENST00000473258 SETD2Q9BYW2 2564 aaPredicted RBP5.8□□□□□ -1.48
COL6A3-210ENST00000473258 C19orf73Q9NVV2 129 aa5.79□□□□□ -1.48
COL6A3-210ENST00000473258 FAM168BA1KXE4 195 aa5.79□□□□□ -1.48
COL6A3-210ENST00000473258 BDP1A6H8Y1 2624 aa5.79□□□□□ -1.48
COL6A3-210ENST00000473258 NCOR2Q9Y618 2525 aa5.78□□□□□ -1.48
COL6A3-210ENST00000473258 ZNF575Q86XF7 245 aa5.78□□□□□ -1.48
COL6A3-210ENST00000473258 TYMSOSQ8TAI1 123 aa5.77□□□□□ -1.49
COL6A3-210ENST00000473258 A0A1W2PNU3 283 aaPredicted RBP5.77□□□□□ -1.49
COL6A3-210ENST00000473258 H3BNG1 76 aa5.76□□□□□ -1.49
COL6A3-210ENST00000473258 XIRP2A4UGR9 3374 aa5.76□□□□□ -1.49
COL6A3-210ENST00000473258 SPATA8Q6RVD6 105 aa5.75□□□□□ -1.49
COL6A3-210ENST00000473258 ADM2Q7Z4H4 148 aa5.75□□□□□ -1.49
COL6A3-210ENST00000473258 CNBPP62633 177 aaKnown RBP5.75□□□□□ -1.49
COL6A3-210ENST00000473258 CHD8Q9HCK8 2581 aa5.75□□□□□ -1.49
COL6A3-210ENST00000473258 RPL37P61927 97 aaKnown RBP5.74□□□□□ -1.49
COL6A3-210ENST00000473258 BRCA2P51587 3418 aa5.74□□□□□ -1.49
COL6A3-210ENST00000473258 A0A096LNT2 108 aa5.74□□□□□ -1.49
COL6A3-210ENST00000473258 USP9XQ93008 2570 aaPredicted RBP5.73□□□□□ -1.49
COL6A3-210ENST00000473258 CR1P17927 2039 aa5.72□□□□□ -1.49
COL6A3-210ENST00000473258 CDH23Q9H251 3354 aa5.72□□□□□ -1.49
COL6A3-210ENST00000473258 MMP24-AS1A0A0U1RRL7 71 aa5.71□□□□□ -1.5
COL6A3-210ENST00000473258 A0A087X002 238 aa5.7□□□□□ -1.5
COL6A3-210ENST00000473258 ABCA12Q86UK0 2595 aa5.69□□□□□ -1.5
COL6A3-210ENST00000473258 PRR34Q9NV39 138 aa5.69□□□□□ -1.5
COL6A3-210ENST00000473258 CPAMD8Q8IZJ3 1885 aa5.69□□□□□ -1.5
COL6A3-210ENST00000473258 IGLV5-37A0A075B6J1 123 aa5.68□□□□□ -1.5
COL6A3-210ENST00000473258 TNP2Q05952 138 aa5.67□□□□□ -1.5
COL6A3-210ENST00000473258 A8MU10 97 aa5.67□□□□□ -1.5
COL6A3-210ENST00000473258 ZCCHC13Q8WW36 166 aaKnown RBP5.66□□□□□ -1.5
COL6A3-210ENST00000473258 ZFHX2Q9C0A1 2572 aaPredicted RBP5.66□□□□□ -1.5
COL6A3-210ENST00000473258 JMJD1CQ15652 2540 aa5.65□□□□□ -1.5
COL6A3-210ENST00000473258 RAI1Q7Z5J4 1906 aaPredicted RBP5.65□□□□□ -1.5
COL6A3-210ENST00000473258 DMBT1Q9UGM3 2413 aaPredicted RBP5.65□□□□□ -1.5
COL6A3-210ENST00000473258 KLK9Q2XQG4 91 aa5.65□□□□□ -1.51
COL6A3-210ENST00000473258 C20orf166-AS1Q96NR2 134 aa5.65□□□□□ -1.51
COL6A3-210ENST00000473258 ANKRD17O75179 2603 aaKnown RBP5.64□□□□□ -1.51
COL6A3-210ENST00000473258 PIEZO2Q9H5I5 2752 aa5.64□□□□□ -1.51
COL6A3-210ENST00000473258 ZNF861PO60384 105 aa5.64□□□□□ -1.51
COL6A3-210ENST00000473258 Q6ZR54 194 aa5.63□□□□□ -1.51
COL6A3-210ENST00000473258 MYO15AQ9UKN7 3530 aa5.63□□□□□ -1.51
COL6A3-210ENST00000473258 LAMA2P24043 3122 aaKnown RBP5.63□□□□□ -1.51
COL6A3-210ENST00000473258 H1FX-AS1Q4G0G2 97 aa5.62□□□□□ -1.51
COL6A3-210ENST00000473258 C9orf92A6NGG3 77 aa5.61□□□□□ -1.51
COL6A3-210ENST00000473258 DNAH14Q0VDD8 3507 aa5.61□□□□□ -1.51
COL6A3-210ENST00000473258 WDFY3Q8IZQ1 3526 aa5.61□□□□□ -1.51
COL6A3-210ENST00000473258 LINC00612Q8N6U2 182 aa5.61□□□□□ -1.51
COL6A3-210ENST00000473258 USP9YO00507 2555 aaPredicted RBP5.6□□□□□ -1.51
COL6A3-210ENST00000473258 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP5.6□□□□□ -1.51
COL6A3-210ENST00000473258 PCSK5Q92824 1860 aa5.6□□□□□ -1.51
COL6A3-210ENST00000473258 MTORP42345 2549 aa5.6□□□□□ -1.51
COL6A3-210ENST00000473258 Q5W150 140 aa5.59□□□□□ -1.51
COL6A3-210ENST00000473258 SPTBN4Q9H254 2564 aa5.59□□□□□ -1.51
COL6A3-210ENST00000473258 KRTAP24-1Q3LI83 254 aa5.59□□□□□ -1.51
COL6A3-210ENST00000473258 SMR3AQ99954 134 aa5.59□□□□□ -1.52
COL6A3-210ENST00000473258 LINC00304Q8N9R0 145 aa5.57□□□□□ -1.52
COL6A3-210ENST00000473258 ANAPC11Q9NYG5 84 aa5.57□□□□□ -1.52
COL6A3-210ENST00000473258 LINC00472Q9H8W2 130 aa5.56□□□□□ -1.52
COL6A3-210ENST00000473258 A8MUU9 505 aa5.56□□□□□ -1.52
COL6A3-210ENST00000473258 PLAC4Q8WY50 150 aa5.55□□□□□ -1.52
COL6A3-210ENST00000473258 PSORS1C2Q9UIG4 136 aa5.55□□□□□ -1.52
COL6A3-210ENST00000473258 CASC10Q5T4H9 136 aa5.54□□□□□ -1.52
COL6A3-210ENST00000473258 GIG44P09565 113 aaPredicted RBP5.54□□□□□ -1.52
COL6A3-210ENST00000473258 M0R2T5 61 aa5.54□□□□□ -1.52
COL6A3-210ENST00000473258 C10orf142B7Z368 130 aa5.53□□□□□ -1.52
COL6A3-210ENST00000473258 NBDYA0A0U1RRE5 68 aa5.53□□□□□ -1.52
COL6A3-210ENST00000473258 RANBP2P49792 3224 aaKnown RBP5.52□□□□□ -1.53
COL6A3-210ENST00000473258 CEP350Q5VT06 3117 aa5.51□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 61.9 ms