RNA–Protein interactions for RNA: ENST00000471947.1

CCDC88A-211, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 3,713 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-211ENST00000471947 ACYP1P07311 99 aa8.99□□□□□ -0.97
CCDC88A-211ENST00000471947 TM2D3Q9BRN9 247 aa8.99□□□□□ -0.97
CCDC88A-211ENST00000471947 COL7A1Q02388 2944 aa8.98□□□□□ -0.97
CCDC88A-211ENST00000471947 LINC01561Q8N1V8 128 aa8.97□□□□□ -0.97
CCDC88A-211ENST00000471947 IGLV6-57P01721 117 aa8.96□□□□□ -0.98
CCDC88A-211ENST00000471947 H3BNG1 76 aa8.95□□□□□ -0.98
CCDC88A-211ENST00000471947 UPK3BQ9BT76 320 aa8.95□□□□□ -0.98
CCDC88A-211ENST00000471947 PHF5AQ7RTV0 110 aaKnown RBP8.95□□□□□ -0.98
CCDC88A-211ENST00000471947 C2orf48Q96LS8 159 aa8.94□□□□□ -0.98
CCDC88A-211ENST00000471947 ANK2Q01484 3957 aa8.94□□□□□ -0.98
CCDC88A-211ENST00000471947 HRCT1Q6UXD1 115 aa8.94□□□□□ -0.98
CCDC88A-211ENST00000471947 UBE2AP49459 152 aa8.93□□□□□ -0.98
CCDC88A-211ENST00000471947 MRPL55Q7Z7F7 128 aaKnown RBP8.93□□□□□ -0.98
CCDC88A-211ENST00000471947 F8WEM9 126 aa8.93□□□□□ -0.98
CCDC88A-211ENST00000471947 NREPQ16612 68 aa8.93□□□□□ -0.98
CCDC88A-211ENST00000471947 KRTAP26-1Q6PEX3 210 aa8.93□□□□□ -0.98
CCDC88A-211ENST00000471947 GVQW2A0A096LPI5 108 aaPredicted RBP8.92□□□□□ -0.98
CCDC88A-211ENST00000471947 GHRHP01286 108 aa8.92□□□□□ -0.98
CCDC88A-211ENST00000471947 LOC107984640A0A0U1RRK4 108 aa8.92□□□□□ -0.98
CCDC88A-211ENST00000471947 ERC2-IT1O76042 136 aa8.91□□□□□ -0.98
CCDC88A-211ENST00000471947 NHLRC4P0CG21 123 aaPredicted RBP8.91□□□□□ -0.98
CCDC88A-211ENST00000471947 FAM240AA0A1B0GVK7 77 aa8.91□□□□□ -0.98
CCDC88A-211ENST00000471947 MUC7Q8TAX7 377 aa8.91□□□□□ -0.98
CCDC88A-211ENST00000471947 LRCOL1A6NCL2 159 aa8.9□□□□□ -0.98
CCDC88A-211ENST00000471947 SMIM20Q8N5G0 67 aa8.9□□□□□ -0.98
CCDC88A-211ENST00000471947 ELOF1P60002 83 aaKnown RBP8.89□□□□□ -0.99
CCDC88A-211ENST00000471947 C20orf197Q8N268 126 aa8.88□□□□□ -0.99
CCDC88A-211ENST00000471947 Q6ZVQ6 151 aa8.88□□□□□ -0.99
CCDC88A-211ENST00000471947 SNURFQ9Y675 71 aa8.87□□□□□ -0.99
CCDC88A-211ENST00000471947 IGLV9-49A0A0B4J1Y8 123 aa8.86□□□□□ -0.99
CCDC88A-211ENST00000471947 REG3GQ6UW15 175 aa8.86□□□□□ -0.99
CCDC88A-211ENST00000471947 BPY2O14599 106 aa8.85□□□□□ -0.99
CCDC88A-211ENST00000471947 Q6ZQT0 140 aa8.84□□□□□ -0.99
CCDC88A-211ENST00000471947 LINC00528Q8N1L1 170 aa8.84□□□□□ -0.99
CCDC88A-211ENST00000471947 B9D2Q9BPU9 175 aa8.84□□□□□ -0.99
CCDC88A-211ENST00000471947 C1orf137Q5JT78 98 aa8.84□□□□□ -0.99
CCDC88A-211ENST00000471947 NBDYA0A0U1RRE5 68 aa8.82□□□□□ -1
CCDC88A-211ENST00000471947 LINC01547P58512 204 aaPredicted RBP8.82□□□□□ -1
CCDC88A-211ENST00000471947 Q6JHZ5 121 aa8.82□□□□□ -1
CCDC88A-211ENST00000471947 ANAPC11Q9NYG5 84 aa8.82□□□□□ -1
CCDC88A-211ENST00000471947 APLNQ9ULZ1 77 aa8.82□□□□□ -1
CCDC88A-211ENST00000471947 Q8N377 158 aa8.81□□□□□ -1
CCDC88A-211ENST00000471947 Q9BRP9 147 aa8.8□□□□□ -1
CCDC88A-211ENST00000471947 Q6ZRX8 168 aa8.8□□□□□ -1
CCDC88A-211ENST00000471947 TRBV7-7A0A0K0K1E9 115 aa8.8□□□□□ -1
CCDC88A-211ENST00000471947 ATOX1O00244 68 aa8.8□□□□□ -1
CCDC88A-211ENST00000471947 NUPR2A6NF83 97 aa8.79□□□□□ -1
CCDC88A-211ENST00000471947 WFDC13Q8IUB5 93 aa8.79□□□□□ -1
CCDC88A-211ENST00000471947 IGLV1-50A0A075B6I6 118 aa8.79□□□□□ -1
CCDC88A-211ENST00000471947 A0A087WSZ3 146 aa8.78□□□□□ -1
CCDC88A-211ENST00000471947 PANO1I0J062 215 aa8.78□□□□□ -1
CCDC88A-211ENST00000471947 Q6Q795 121 aa8.77□□□□□ -1.01
CCDC88A-211ENST00000471947 DHRS4-AS1Q9P1J3 65 aa8.77□□□□□ -1.01
CCDC88A-211ENST00000471947 PRR4Q16378 134 aa8.76□□□□□ -1.01
CCDC88A-211ENST00000471947 KCNQ1DNQ9H478 68 aa8.75□□□□□ -1.01
CCDC88A-211ENST00000471947 FAM30AQ9NZY2 134 aa8.75□□□□□ -1.01
CCDC88A-211ENST00000471947 EPM2AB3EWF7 344 aa8.75□□□□□ -1.01
CCDC88A-211ENST00000471947 FBN3Q75N90 2809 aa8.74□□□□□ -1.01
CCDC88A-211ENST00000471947 KRTAP7-1Q8IUC3 87 aa8.74□□□□□ -1.01
CCDC88A-211ENST00000471947 RPL37AP61513 92 aaKnown RBP8.74□□□□□ -1.01
CCDC88A-211ENST00000471947 SPINK6Q6UWN8 80 aa8.74□□□□□ -1.01
CCDC88A-211ENST00000471947 C14orf177Q52M58 125 aa8.74□□□□□ -1.01
CCDC88A-211ENST00000471947 IMUPQ9GZP8 106 aa8.73□□□□□ -1.01
CCDC88A-211ENST00000471947 C16orf90A8MZG2 172 aa8.72□□□□□ -1.01
CCDC88A-211ENST00000471947 H0Y9J4 135 aa8.72□□□□□ -1.01
CCDC88A-211ENST00000471947 COX7CP15954 63 aa8.72□□□□□ -1.01
CCDC88A-211ENST00000471947 UQCRQO14949 82 aa8.72□□□□□ -1.01
CCDC88A-211ENST00000471947 PRYO14603 147 aa8.72□□□□□ -1.01
CCDC88A-211ENST00000471947 KRTAP11-1Q8IUC1 163 aa8.72□□□□□ -1.01
CCDC88A-211ENST00000471947 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP8.72□□□□□ -1.01
CCDC88A-211ENST00000471947 IGLV5-52A0A0A0MRZ9 124 aa8.71□□□□□ -1.01
CCDC88A-211ENST00000471947 LINC00476Q8WZB0 136 aa8.71□□□□□ -1.01
CCDC88A-211ENST00000471947 MEGF8Q7Z7M0 2845 aa8.71□□□□□ -1.01
CCDC88A-211ENST00000471947 PDE6GP18545 87 aa8.71□□□□□ -1.02
CCDC88A-211ENST00000471947 CYSTM1Q9H1C7 97 aa8.7□□□□□ -1.02
CCDC88A-211ENST00000471947 SERP2Q8N6R1 65 aa8.7□□□□□ -1.02
CCDC88A-211ENST00000471947 OBSCN-AS1Q96MR7 158 aa8.7□□□□□ -1.02
CCDC88A-211ENST00000471947 LYSTQ99698 3801 aa8.69□□□□□ -1.02
CCDC88A-211ENST00000471947 HUWE1Q7Z6Z7 4374 aaKnown RBP8.68□□□□□ -1.02
CCDC88A-211ENST00000471947 C1orf134Q5TEV5 83 aa8.68□□□□□ -1.02
CCDC88A-211ENST00000471947 RTL8CO15255 209 aa8.68□□□□□ -1.02
CCDC88A-211ENST00000471947 LINC01600Q96MT4 127 aa8.68□□□□□ -1.02
CCDC88A-211ENST00000471947 A0A1W2PNM2 257 aa8.67□□□□□ -1.02
CCDC88A-211ENST00000471947 TRBV7-4A0A0J9YYF1 115 aa8.66□□□□□ -1.02
CCDC88A-211ENST00000471947 NDUFS5O43920 106 aa8.66□□□□□ -1.02
CCDC88A-211ENST00000471947 DNAH10Q8IVF4 4471 aa8.66□□□□□ -1.02
CCDC88A-211ENST00000471947 LOC110117498A0A087WWA1 95 aa8.65□□□□□ -1.03
CCDC88A-211ENST00000471947 C9orf163Q8N9P6 203 aa8.65□□□□□ -1.03
CCDC88A-211ENST00000471947 A0A087WTM6 91 aa8.64□□□□□ -1.03
CCDC88A-211ENST00000471947 TNP2Q05952 138 aa8.63□□□□□ -1.03
CCDC88A-211ENST00000471947 SMIM29Q86T20 159 aa8.63□□□□□ -1.03
CCDC88A-211ENST00000471947 DNHD1Q96M86 4753 aa8.63□□□□□ -1.03
CCDC88A-211ENST00000471947 TLX1NBP0CAT3 122 aa8.63□□□□□ -1.03
CCDC88A-211ENST00000471947 IGFL1Q6UW32 110 aa8.62□□□□□ -1.03
CCDC88A-211ENST00000471947 ATP5EP2Q5VTU8 51 aa8.62□□□□□ -1.03
CCDC88A-211ENST00000471947 K7EQZ3 153 aa8.61□□□□□ -1.03
CCDC88A-211ENST00000471947 CIRBP-AS1Q8TBR5 109 aa8.61□□□□□ -1.03
CCDC88A-211ENST00000471947 TRBV7-6A0A0J9YX20 115 aa8.6□□□□□ -1.03
CCDC88A-211ENST00000471947 MOBPQ13875 183 aa8.6□□□□□ -1.03
CCDC88A-211ENST00000471947 Q8NBF4 154 aa8.6□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 8.9 ms