RNA–Protein interactions for RNA: ENST00000471702.2

NPHP3-ACAD11-201, Transcript of NPHP3-ACAD11 readthrough (NMD candidate), humanhuman

TSL 2 BASIC

Gene NPHP3-ACAD11, Length 7,784 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3-ACAD11-201ENST00000471702 CDC42SE1Q9NRR8 79 aa9.06□□□□□ -0.96
NPHP3-ACAD11-201ENST00000471702 FAM168BA1KXE4 195 aa9.06□□□□□ -0.96
NPHP3-ACAD11-201ENST00000471702 MIR22HGQ0VDD5 57 aa9.06□□□□□ -0.96
NPHP3-ACAD11-201ENST00000471702 ERC2-IT1O76042 136 aa9.06□□□□□ -0.96
NPHP3-ACAD11-201ENST00000471702 K7EQZ3 153 aa9.05□□□□□ -0.96
NPHP3-ACAD11-201ENST00000471702 LINC00588Q9Y4M8 146 aa9.05□□□□□ -0.96
NPHP3-ACAD11-201ENST00000471702 IGHV3OR16-9A0A0B4J2B5 98 aa9.04□□□□□ -0.96
NPHP3-ACAD11-201ENST00000471702 C11orf72Q8NBR9 251 aa9.03□□□□□ -0.96
NPHP3-ACAD11-201ENST00000471702 LINC01561Q8N1V8 128 aa9.02□□□□□ -0.97
NPHP3-ACAD11-201ENST00000471702 BAHCC1Q9P281 2608 aa9.01□□□□□ -0.97
NPHP3-ACAD11-201ENST00000471702 IGLV5-45A0A087WSX0 123 aa9□□□□□ -0.97
NPHP3-ACAD11-201ENST00000471702 A0A096LNJ9 63 aa9□□□□□ -0.97
NPHP3-ACAD11-201ENST00000471702 PLAC4Q8WY50 150 aa9□□□□□ -0.97
NPHP3-ACAD11-201ENST00000471702 XIRP2A4UGR9 3374 aa9□□□□□ -0.97
NPHP3-ACAD11-201ENST00000471702 Q6ZRX8 168 aa8.99□□□□□ -0.97
NPHP3-ACAD11-201ENST00000471702 DMBT1Q9UGM3 2413 aaPredicted RBP8.99□□□□□ -0.97
NPHP3-ACAD11-201ENST00000471702 TLX1NBP0CAT3 122 aa8.99□□□□□ -0.97
NPHP3-ACAD11-201ENST00000471702 RPS28P62857 69 aaKnown RBP8.98□□□□□ -0.97
NPHP3-ACAD11-201ENST00000471702 KTN1-AS1Q86SY8 53 aa8.98□□□□□ -0.97
NPHP3-ACAD11-201ENST00000471702 A0A0C4DFX4 3053 aa8.98□□□□□ -0.97
NPHP3-ACAD11-201ENST00000471702 BCE1O60756 84 aa8.98□□□□□ -0.97
NPHP3-ACAD11-201ENST00000471702 FREM2Q5SZK8 3169 aa8.98□□□□□ -0.97
NPHP3-ACAD11-201ENST00000471702 FAM218AQ96MZ4 157 aa8.98□□□□□ -0.97
NPHP3-ACAD11-201ENST00000471702 DNAH10OSP0CZ25 163 aa8.98□□□□□ -0.97
NPHP3-ACAD11-201ENST00000471702 LOC101927531A0A1B0GV80 90 aa8.97□□□□□ -0.97
NPHP3-ACAD11-201ENST00000471702 TM2D3Q9BRN9 247 aa8.97□□□□□ -0.97
NPHP3-ACAD11-201ENST00000471702 DSCR10P59022 87 aa8.97□□□□□ -0.97
NPHP3-ACAD11-201ENST00000471702 ELOF1P60002 83 aaKnown RBP8.96□□□□□ -0.98
NPHP3-ACAD11-201ENST00000471702 LINC00336Q6ZUF6 198 aa8.96□□□□□ -0.98
NPHP3-ACAD11-201ENST00000471702 H3BPC8 53 aa8.95□□□□□ -0.98
NPHP3-ACAD11-201ENST00000471702 CHD6Q8TD26 2715 aa8.94□□□□□ -0.98
NPHP3-ACAD11-201ENST00000471702 TRBV7-4A0A0J9YYF1 115 aa8.94□□□□□ -0.98
NPHP3-ACAD11-201ENST00000471702 Q6ZSA8 131 aa8.94□□□□□ -0.98
NPHP3-ACAD11-201ENST00000471702 SETXQ7Z333 2677 aaKnown RBP8.94□□□□□ -0.98
NPHP3-ACAD11-201ENST00000471702 ANAPC11Q9NYG5 84 aa8.93□□□□□ -0.98
NPHP3-ACAD11-201ENST00000471702 TEX15Q9BXT5 2789 aa8.93□□□□□ -0.98
NPHP3-ACAD11-201ENST00000471702 MRPL34Q9BQ48 92 aaKnown RBP8.92□□□□□ -0.98
NPHP3-ACAD11-201ENST00000471702 COA5Q86WW8 74 aa8.91□□□□□ -0.98
NPHP3-ACAD11-201ENST00000471702 Q8NAQ8 132 aa8.91□□□□□ -0.98
NPHP3-ACAD11-201ENST00000471702 SMCPP49901 116 aaPredicted RBP8.9□□□□□ -0.98
NPHP3-ACAD11-201ENST00000471702 FLNAP21333 2647 aaKnown RBP8.89□□□□□ -0.99
NPHP3-ACAD11-201ENST00000471702 COX8CQ7Z4L0 72 aa8.88□□□□□ -0.99
NPHP3-ACAD11-201ENST00000471702 A0A0G2JQZ4 141 aa8.88□□□□□ -0.99
NPHP3-ACAD11-201ENST00000471702 A0A1W2PNN7 141 aa8.88□□□□□ -0.99
NPHP3-ACAD11-201ENST00000471702 TRIOO75962 3097 aa8.88□□□□□ -0.99
NPHP3-ACAD11-201ENST00000471702 NBEAL1Q6ZS30 2694 aa8.87□□□□□ -0.99
NPHP3-ACAD11-201ENST00000471702 IGLV1-50A0A075B6I6 118 aa8.87□□□□□ -0.99
NPHP3-ACAD11-201ENST00000471702 A8MWP4 228 aa8.86□□□□□ -0.99
NPHP3-ACAD11-201ENST00000471702 H3BNG1 76 aa8.86□□□□□ -0.99
NPHP3-ACAD11-201ENST00000471702 HRES1P13985 223 aa8.86□□□□□ -0.99
NPHP3-ACAD11-201ENST00000471702 HELZ2Q9BYK8 2649 aaKnown RBP8.86□□□□□ -0.99
NPHP3-ACAD11-201ENST00000471702 A0A0A0MQY5 61 aa8.84□□□□□ -0.99
NPHP3-ACAD11-201ENST00000471702 GVQW2A0A096LPI5 108 aaPredicted RBP8.84□□□□□ -0.99
NPHP3-ACAD11-201ENST00000471702 Q8N1X5 172 aa8.81□□□□□ -1
NPHP3-ACAD11-201ENST00000471702 PRO0461Q9UI25 63 aa8.8□□□□□ -1
NPHP3-ACAD11-201ENST00000471702 A8MUN3 132 aa8.8□□□□□ -1
NPHP3-ACAD11-201ENST00000471702 TEP1Q99973 2627 aaKnown RBP8.8□□□□□ -1
NPHP3-ACAD11-201ENST00000471702 K7EIL1 84 aa8.8□□□□□ -1
NPHP3-ACAD11-201ENST00000471702 CELSR3Q9NYQ7 3312 aa8.8□□□□□ -1
NPHP3-ACAD11-201ENST00000471702 A0A1B0GW54 56 aa8.79□□□□□ -1
NPHP3-ACAD11-201ENST00000471702 CYP4F30PQ9H0H9 118 aa8.79□□□□□ -1
NPHP3-ACAD11-201ENST00000471702 KRTAP10-11P60412 298 aa8.78□□□□□ -1
NPHP3-ACAD11-201ENST00000471702 COL4A2P08572 1712 aa8.77□□□□□ -1.01
NPHP3-ACAD11-201ENST00000471702 ZNF861PO60384 105 aa8.77□□□□□ -1.01
NPHP3-ACAD11-201ENST00000471702 H1FX-AS1Q4G0G2 97 aa8.77□□□□□ -1.01
NPHP3-ACAD11-201ENST00000471702 MAP1AP78559 2803 aaPredicted RBP8.77□□□□□ -1.01
NPHP3-ACAD11-201ENST00000471702 LOC110117498A0A087WWA1 95 aa8.77□□□□□ -1.01
NPHP3-ACAD11-201ENST00000471702 MKI67P46013 3256 aaKnown RBP8.76□□□□□ -1.01
NPHP3-ACAD11-201ENST00000471702 C15orf56Q8N910 161 aa8.76□□□□□ -1.01
NPHP3-ACAD11-201ENST00000471702 STAB2Q8WWQ8 2551 aa8.75□□□□□ -1.01
NPHP3-ACAD11-201ENST00000471702 IGFL1Q6UW32 110 aa8.75□□□□□ -1.01
NPHP3-ACAD11-201ENST00000471702 COL6A5A8TX70 2615 aa8.75□□□□□ -1.01
NPHP3-ACAD11-201ENST00000471702 UNC79Q9P2D8 2635 aa8.75□□□□□ -1.01
NPHP3-ACAD11-201ENST00000471702 Q1T7F1 81 aa8.74□□□□□ -1.01
NPHP3-ACAD11-201ENST00000471702 CD164Q04900 197 aa8.73□□□□□ -1.01
NPHP3-ACAD11-201ENST00000471702 FAM104AQ969W3 186 aa8.72□□□□□ -1.01
NPHP3-ACAD11-201ENST00000471702 PRUNE2Q8WUY3 3088 aa8.72□□□□□ -1.01
NPHP3-ACAD11-201ENST00000471702 A0A087WTM6 91 aa8.72□□□□□ -1.01
NPHP3-ACAD11-201ENST00000471702 NOTCH1P46531 2555 aa8.72□□□□□ -1.01
NPHP3-ACAD11-201ENST00000471702 Q5VSD8 79 aa8.72□□□□□ -1.01
NPHP3-ACAD11-201ENST00000471702 A0A1B0GVX0 72 aa8.7□□□□□ -1.02
NPHP3-ACAD11-201ENST00000471702 PRR15Q8IV56 129 aa8.7□□□□□ -1.02
NPHP3-ACAD11-201ENST00000471702 REV3LO60673 3130 aa8.7□□□□□ -1.02
NPHP3-ACAD11-201ENST00000471702 IGLV7-46A0A075B6I9 117 aa8.68□□□□□ -1.02
NPHP3-ACAD11-201ENST00000471702 LITAFQ99732 161 aa8.68□□□□□ -1.02
NPHP3-ACAD11-201ENST00000471702 C9orf163Q8N9P6 203 aa8.67□□□□□ -1.02
NPHP3-ACAD11-201ENST00000471702 LINC00528Q8N1L1 170 aa8.67□□□□□ -1.02
NPHP3-ACAD11-201ENST00000471702 LINC01546A6NGU7 62 aa8.66□□□□□ -1.02
NPHP3-ACAD11-201ENST00000471702 LCA10Q71F78 164 aa8.65□□□□□ -1.02
NPHP3-ACAD11-201ENST00000471702 VPS13AQ96RL7 3174 aa8.65□□□□□ -1.03
NPHP3-ACAD11-201ENST00000471702 Q8N377 158 aa8.65□□□□□ -1.03
NPHP3-ACAD11-201ENST00000471702 UNC80Q8N2C7 3258 aa8.64□□□□□ -1.03
NPHP3-ACAD11-201ENST00000471702 IGLV7-43P04211 117 aa8.64□□□□□ -1.03
NPHP3-ACAD11-201ENST00000471702 KCNQ1DNQ9H478 68 aa8.64□□□□□ -1.03
NPHP3-ACAD11-201ENST00000471702 BRCA2P51587 3418 aa8.63□□□□□ -1.03
NPHP3-ACAD11-201ENST00000471702 PRR26Q8N8Z3 221 aa8.63□□□□□ -1.03
NPHP3-ACAD11-201ENST00000471702 SPINK7P58062 85 aa8.62□□□□□ -1.03
NPHP3-ACAD11-201ENST00000471702 FRYQ5TBA9 3013 aa8.61□□□□□ -1.03
NPHP3-ACAD11-201ENST00000471702 R4GN34 69 aa8.61□□□□□ -1.03
NPHP3-ACAD11-201ENST00000471702 LAMA3Q16787 3333 aa8.61□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 9.5 ms