RNA–Protein interactions for RNA: ENST00000470167.1

COL3A1-205, Transcript of collagen type III alpha 1 chain, humanhuman

TSL 2

Gene COL3A1, Length 628 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-205ENST00000470167 UQCR11O14957 56 aa3.22□□□□□ -1.89
COL3A1-205ENST00000470167 MGPP08493 103 aa3.22□□□□□ -1.89
COL3A1-205ENST00000470167 LINC00315P59091 139 aa3.22□□□□□ -1.89
COL3A1-205ENST00000470167 DEFB112Q30KQ8 113 aa3.22□□□□□ -1.89
COL3A1-205ENST00000470167 DNAJC13O75165 2243 aa3.21□□□□□ -1.89
COL3A1-205ENST00000470167 CRYBG3Q68DQ2 2970 aa3.21□□□□□ -1.89
COL3A1-205ENST00000470167 PTPRQQ9UMZ3 2332 aa3.21□□□□□ -1.89
COL3A1-205ENST00000470167 IGKV3-7A0A075B6H7 116 aa3.21□□□□□ -1.9
COL3A1-205ENST00000470167 TRBV6-4A0A1B0GX49 114 aa3.21□□□□□ -1.9
COL3A1-205ENST00000470167 NDUFAF8A1L188 74 aa3.21□□□□□ -1.9
COL3A1-205ENST00000470167 A8MUU9 505 aa3.21□□□□□ -1.9
COL3A1-205ENST00000470167 PRAC2D3DTV9 90 aa3.21□□□□□ -1.9
COL3A1-205ENST00000470167 CCL3L1P16619 93 aa3.21□□□□□ -1.9
COL3A1-205ENST00000470167 COX7BP24311 80 aa3.21□□□□□ -1.9
COL3A1-205ENST00000470167 ZNF407Q9C0G0 2248 aa3.21□□□□□ -1.9
COL3A1-205ENST00000470167 LRBAP50851 2863 aa3.21□□□□□ -1.9
COL3A1-205ENST00000470167 ITPR2Q14571 2701 aa3.21□□□□□ -1.9
COL3A1-205ENST00000470167 NBPF19A0A087WUL8 3843 aa3.2□□□□□ -1.9
COL3A1-205ENST00000470167 IGKV2-40A0A087WW87 121 aaPredicted RBP3.2□□□□□ -1.9
COL3A1-205ENST00000470167 PANO1I0J062 215 aa3.2□□□□□ -1.9
COL3A1-205ENST00000470167 IGKV2D-40P01614 121 aaPredicted RBP3.2□□□□□ -1.9
COL3A1-205ENST00000470167 TLX1NBP0CAT3 122 aa3.2□□□□□ -1.9
COL3A1-205ENST00000470167 Q5W150 140 aa3.2□□□□□ -1.9
COL3A1-205ENST00000470167 ST20-AS1Q8NBB2 130 aa3.2□□□□□ -1.9
COL3A1-205ENST00000470167 TMEM167AQ8TBQ9 72 aa3.2□□□□□ -1.9
COL3A1-205ENST00000470167 USP9YO00507 2555 aaPredicted RBP3.19□□□□□ -1.9
COL3A1-205ENST00000470167 LYZP61626 148 aa3.19□□□□□ -1.9
COL3A1-205ENST00000470167 KRTAP1-1Q07627 177 aa3.19□□□□□ -1.9
COL3A1-205ENST00000470167 DEFB134Q4QY38 66 aa3.19□□□□□ -1.9
COL3A1-205ENST00000470167 F8P00451 2351 aa3.19□□□□□ -1.9
COL3A1-205ENST00000470167 ASXL3Q9C0F0 2248 aa3.19□□□□□ -1.9
COL3A1-205ENST00000470167 NOTCH4Q99466 2003 aa3.19□□□□□ -1.9
COL3A1-205ENST00000470167 KNTC1P50748 2209 aa3.18□□□□□ -1.9
COL3A1-205ENST00000470167 A0A096LNT2 108 aa3.18□□□□□ -1.9
COL3A1-205ENST00000470167 PRB1P04280 392 aa3.18□□□□□ -1.9
COL3A1-205ENST00000470167 LINC00158P58513 81 aa3.18□□□□□ -1.9
COL3A1-205ENST00000470167 WT1-ASQ06250 92 aa3.18□□□□□ -1.9
COL3A1-205ENST00000470167 LINC00575Q6W349 94 aa3.18□□□□□ -1.9
COL3A1-205ENST00000470167 AKAP13Q12802 2813 aa3.17□□□□□ -1.9
COL3A1-205ENST00000470167 WDFY3Q8IZQ1 3526 aa3.17□□□□□ -1.9
COL3A1-205ENST00000470167 J3QKU1 62 aa3.17□□□□□ -1.9
COL3A1-205ENST00000470167 STATHP02808 62 aa3.17□□□□□ -1.9
COL3A1-205ENST00000470167 RNASE3P12724 160 aaKnown RBP3.17□□□□□ -1.9
COL3A1-205ENST00000470167 SVILO95425 2214 aa3.17□□□□□ -1.9
COL3A1-205ENST00000470167 CR1P17927 2039 aa3.17□□□□□ -1.9
COL3A1-205ENST00000470167 COL6A5A8TX70 2615 aa3.17□□□□□ -1.9
COL3A1-205ENST00000470167 UTP20O75691 2785 aaKnown RBP3.17□□□□□ -1.9
COL3A1-205ENST00000470167 CACNA1DQ01668 2161 aa3.17□□□□□ -1.9
COL3A1-205ENST00000470167 IGKV3OR2-268A0A0C4DH90 116 aa3.16□□□□□ -1.9
COL3A1-205ENST00000470167 SMIM1B2RUZ4 78 aa3.16□□□□□ -1.9
COL3A1-205ENST00000470167 RPL39P5Q59GN2 51 aa3.16□□□□□ -1.9
COL3A1-205ENST00000470167 Q8N9L7 120 aa3.16□□□□□ -1.9
COL3A1-205ENST00000470167 LEAP2Q969E1 77 aa3.16□□□□□ -1.9
COL3A1-205ENST00000470167 CDKN2A-AS1Q9UH64 79 aa3.16□□□□□ -1.9
COL3A1-205ENST00000470167 CELSR1Q9NYQ6 3014 aa3.16□□□□□ -1.9
COL3A1-205ENST00000470167 NIPBLQ6KC79 2804 aaeCLIP3.15□□□□□ -1.9
COL3A1-205ENST00000470167 DOCK10Q96BY6 2186 aa3.15□□□□□ -1.9
COL3A1-205ENST00000470167 ANKHD1Q8IWZ3 2542 aaKnown RBP3.15□□□□□ -1.91
COL3A1-205ENST00000470167 Q6ZQY7 126 aa3.15□□□□□ -1.91
COL3A1-205ENST00000470167 COX14Q96I36 57 aa3.15□□□□□ -1.91
COL3A1-205ENST00000470167 UNC13CQ8NB66 2214 aa3.15□□□□□ -1.91
COL3A1-205ENST00000470167 CENPEQ02224 2701 aa3.14□□□□□ -1.91
COL3A1-205ENST00000470167 PCLOQ9Y6V0 5065 aa3.14□□□□□ -1.91
COL3A1-205ENST00000470167 M0QY20 66 aa3.14□□□□□ -1.91
COL3A1-205ENST00000470167 LINC00472Q9H8W2 130 aa3.14□□□□□ -1.91
COL3A1-205ENST00000470167 KLK12Q9UKR0 248 aa3.14□□□□□ -1.91
COL3A1-205ENST00000470167 LAMA5O15230 3695 aa3.14□□□□□ -1.91
COL3A1-205ENST00000470167 HIVEP3Q5T1R4 2406 aa3.13□□□□□ -1.91
COL3A1-205ENST00000470167 A0A087WTM6 91 aa3.13□□□□□ -1.91
COL3A1-205ENST00000470167 DEFB131BA0A096LNP1 70 aa3.13□□□□□ -1.91
COL3A1-205ENST00000470167 I3L2K1 104 aa3.13□□□□□ -1.91
COL3A1-205ENST00000470167 PRB2P02812 416 aaPredicted RBP3.13□□□□□ -1.91
COL3A1-205ENST00000470167 CELSR2Q9HCU4 2923 aa3.13□□□□□ -1.91
COL3A1-205ENST00000470167 TNCP24821 2201 aa3.13□□□□□ -1.91
COL3A1-205ENST00000470167 PRR14LQ5THK1 2151 aa3.12□□□□□ -1.91
COL3A1-205ENST00000470167 IGKV2D-24A0A075B6R9 120 aa3.12□□□□□ -1.91
COL3A1-205ENST00000470167 A0A1B0GUV1 79 aa3.12□□□□□ -1.91
COL3A1-205ENST00000470167 LINC01565O15544 149 aa3.12□□□□□ -1.91
COL3A1-205ENST00000470167 USF3Q68DE3 2245 aa3.12□□□□□ -1.91
COL3A1-205ENST00000470167 TGP01266 2768 aa3.12□□□□□ -1.91
COL3A1-205ENST00000470167 SPAG17Q6Q759 2223 aa3.11□□□□□ -1.91
COL3A1-205ENST00000470167 IGKV2D-30A0A075B6S6 120 aa3.11□□□□□ -1.91
COL3A1-205ENST00000470167 A0A1W2PNU3 283 aaPredicted RBP3.11□□□□□ -1.91
COL3A1-205ENST00000470167 DEFB108AA8MXU0 73 aa3.11□□□□□ -1.91
COL3A1-205ENST00000470167 MRPL33O75394 65 aaKnown RBP3.11□□□□□ -1.91
COL3A1-205ENST00000470167 MINOS1-NBL1R4GNA1 71 aa3.11□□□□□ -1.91
COL3A1-205ENST00000470167 TLN2Q9Y4G6 2542 aa3.11□□□□□ -1.91
COL3A1-205ENST00000470167 RTTNQ86VV8 2226 aa3.1□□□□□ -1.91
COL3A1-205ENST00000470167 H0YGG7 62 aa3.1□□□□□ -1.91
COL3A1-205ENST00000470167 PRB3Q04118 309 aaPredicted RBP3.1□□□□□ -1.91
COL3A1-205ENST00000470167 MRGPRG-AS1Q2M3A8 158 aa3.1□□□□□ -1.91
COL3A1-205ENST00000470167 Q8IZM0 81 aa3.1□□□□□ -1.91
COL3A1-205ENST00000470167 UBR4Q5T4S7 5183 aa3.1□□□□□ -1.91
COL3A1-205ENST00000470167 VWFP04275 2813 aa3.1□□□□□ -1.91
COL3A1-205ENST00000470167 SDK2Q58EX2 2172 aa3.1□□□□□ -1.91
COL3A1-205ENST00000470167 ALPK2Q86TB3 2170 aa3.1□□□□□ -1.91
COL3A1-205ENST00000470167 MED13LQ71F56 2210 aa3.09□□□□□ -1.91
COL3A1-205ENST00000470167 OTOGQ6ZRI0 2925 aa3.09□□□□□ -1.91
COL3A1-205ENST00000470167 TRGV1A0A0A0MS02 117 aa3.09□□□□□ -1.91
COL3A1-205ENST00000470167 INSP01308 110 aa3.09□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms