RNA–Protein interactions for RNA: ENST00000469415.1

MCF2L-221, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 1 (best)

Gene MCF2L, Length 3,027 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-221ENST00000469415 DPH3Q96FX2 82 aa11.67□□□□□ -0.54
MCF2L-221ENST00000469415 C2orf48Q96LS8 159 aa11.67□□□□□ -0.54
MCF2L-221ENST00000469415 COL7A1Q02388 2944 aa11.66□□□□□ -0.54
MCF2L-221ENST00000469415 ELOF1P60002 83 aaKnown RBP11.66□□□□□ -0.54
MCF2L-221ENST00000469415 C7orf33Q8WU49 177 aa11.65□□□□□ -0.54
MCF2L-221ENST00000469415 UPK3BQ9BT76 320 aa11.65□□□□□ -0.54
MCF2L-221ENST00000469415 LYSTQ99698 3801 aa11.65□□□□□ -0.54
MCF2L-221ENST00000469415 TRAV10A0A0B4J240 114 aa11.65□□□□□ -0.55
MCF2L-221ENST00000469415 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP11.65□□□□□ -0.55
MCF2L-221ENST00000469415 MUC7Q8TAX7 377 aa11.64□□□□□ -0.55
MCF2L-221ENST00000469415 IGKV2-24A0A0C4DH68 120 aa11.63□□□□□ -0.55
MCF2L-221ENST00000469415 ATOX1O00244 68 aa11.63□□□□□ -0.55
MCF2L-221ENST00000469415 Q6ZVQ6 151 aa11.62□□□□□ -0.55
MCF2L-221ENST00000469415 C3orf84H3BNL1 204 aa11.62□□□□□ -0.55
MCF2L-221ENST00000469415 GHRHP01286 108 aa11.61□□□□□ -0.55
MCF2L-221ENST00000469415 DNAH10OSP0CZ25 163 aa11.61□□□□□ -0.55
MCF2L-221ENST00000469415 Q8N9L7 120 aa11.61□□□□□ -0.55
MCF2L-221ENST00000469415 SRRM2Q9UQ35 2752 aaKnown RBP11.61□□□□□ -0.55
MCF2L-221ENST00000469415 IGLV2-33A0A075B6J2 118 aaPredicted RBP11.6□□□□□ -0.55
MCF2L-221ENST00000469415 LINC00528Q8N1L1 170 aa11.6□□□□□ -0.55
MCF2L-221ENST00000469415 Q5XG85 94 aa11.6□□□□□ -0.55
MCF2L-221ENST00000469415 A0A0U1RQV1 116 aa11.59□□□□□ -0.55
MCF2L-221ENST00000469415 LINC01547P58512 204 aaPredicted RBP11.59□□□□□ -0.55
MCF2L-221ENST00000469415 ST20-AS1Q8NBB2 130 aa11.58□□□□□ -0.56
MCF2L-221ENST00000469415 LINC00336Q6ZUF6 198 aa11.57□□□□□ -0.56
MCF2L-221ENST00000469415 HUWE1Q7Z6Z7 4374 aaKnown RBP11.56□□□□□ -0.56
MCF2L-221ENST00000469415 CRYGAP11844 174 aa11.55□□□□□ -0.56
MCF2L-221ENST00000469415 DNAH10Q8IVF4 4471 aa11.55□□□□□ -0.56
MCF2L-221ENST00000469415 A0A0G2JQZ4 141 aa11.54□□□□□ -0.56
MCF2L-221ENST00000469415 A0A1W2PNN7 141 aa11.54□□□□□ -0.56
MCF2L-221ENST00000469415 LOC110117498A0A087WWA1 95 aa11.54□□□□□ -0.56
MCF2L-221ENST00000469415 PSCAO43653 123 aa11.54□□□□□ -0.56
MCF2L-221ENST00000469415 C20orf197Q8N268 126 aa11.54□□□□□ -0.56
MCF2L-221ENST00000469415 SERP2Q8N6R1 65 aa11.54□□□□□ -0.56
MCF2L-221ENST00000469415 ETDCA0A1B0GVM5 59 aa11.53□□□□□ -0.56
MCF2L-221ENST00000469415 KRTAP1-5Q9BYS1 174 aa11.53□□□□□ -0.56
MCF2L-221ENST00000469415 TM2D3Q9BRN9 247 aa11.53□□□□□ -0.56
MCF2L-221ENST00000469415 UBE2BP63146 152 aa11.52□□□□□ -0.56
MCF2L-221ENST00000469415 UBE2DNLQ8IWF7 75 aa11.52□□□□□ -0.56
MCF2L-221ENST00000469415 KRTAP7-1Q8IUC3 87 aa11.51□□□□□ -0.57
MCF2L-221ENST00000469415 TRBV7-4A0A0J9YYF1 115 aa11.5□□□□□ -0.57
MCF2L-221ENST00000469415 ERC2-IT1O76042 136 aa11.5□□□□□ -0.57
MCF2L-221ENST00000469415 Q8N377 158 aa11.5□□□□□ -0.57
MCF2L-221ENST00000469415 Q9BRP9 147 aa11.49□□□□□ -0.57
MCF2L-221ENST00000469415 KCNQ1DNQ9H478 68 aa11.49□□□□□ -0.57
MCF2L-221ENST00000469415 CHTF8P0CG12 524 aa11.46□□□□□ -0.57
MCF2L-221ENST00000469415 ATP5EP2Q5VTU8 51 aa11.46□□□□□ -0.57
MCF2L-221ENST00000469415 SNURFQ9Y675 71 aa11.46□□□□□ -0.57
MCF2L-221ENST00000469415 PRLHP81277 87 aa11.46□□□□□ -0.58
MCF2L-221ENST00000469415 MRPL55Q7Z7F7 128 aaKnown RBP11.46□□□□□ -0.58
MCF2L-221ENST00000469415 BPY2O14599 106 aa11.45□□□□□ -0.58
MCF2L-221ENST00000469415 TMEM258P61165 79 aa11.45□□□□□ -0.58
MCF2L-221ENST00000469415 NREPQ16612 68 aa11.45□□□□□ -0.58
MCF2L-221ENST00000469415 IGLV1-50A0A075B6I6 118 aa11.44□□□□□ -0.58
MCF2L-221ENST00000469415 FUSP35637 526 aaKnown RBP eCLIP11.44□□□□□ -0.58
MCF2L-221ENST00000469415 MDFIQ99750 246 aa11.44□□□□□ -0.58
MCF2L-221ENST00000469415 TRBV7-6A0A0J9YX20 115 aa11.44□□□□□ -0.58
MCF2L-221ENST00000469415 PDE6GP18545 87 aa11.44□□□□□ -0.58
MCF2L-221ENST00000469415 Q6ZRX8 168 aa11.44□□□□□ -0.58
MCF2L-221ENST00000469415 RMI2Q96E14 147 aa11.44□□□□□ -0.58
MCF2L-221ENST00000469415 DNAH3Q8TD57 4116 aa11.44□□□□□ -0.58
MCF2L-221ENST00000469415 A0A096LNI7 61 aa11.43□□□□□ -0.58
MCF2L-221ENST00000469415 FAM236DA0A1B0GTK5 79 aa11.43□□□□□ -0.58
MCF2L-221ENST00000469415 FAM236CP0DP71 79 aa11.43□□□□□ -0.58
MCF2L-221ENST00000469415 RPS28P62857 69 aaKnown RBP11.43□□□□□ -0.58
MCF2L-221ENST00000469415 HIGD2AQ9BW72 106 aa11.43□□□□□ -0.58
MCF2L-221ENST00000469415 LINC00474Q9P2X8 69 aa11.42□□□□□ -0.58
MCF2L-221ENST00000469415 BRK1Q8WUW1 75 aa11.4□□□□□ -0.58
MCF2L-221ENST00000469415 DEFB116Q30KQ4 102 aa11.38□□□□□ -0.59
MCF2L-221ENST00000469415 C1orf137Q5JT78 98 aa11.37□□□□□ -0.59
MCF2L-221ENST00000469415 H3BQ85 93 aa11.37□□□□□ -0.59
MCF2L-221ENST00000469415 TLX1NBP0CAT3 122 aa11.37□□□□□ -0.59
MCF2L-221ENST00000469415 DHRS4-AS1Q9P1J3 65 aa11.36□□□□□ -0.59
MCF2L-221ENST00000469415 REG3GQ6UW15 175 aa11.35□□□□□ -0.59
MCF2L-221ENST00000469415 DNAH9Q9NYC9 4486 aa11.35□□□□□ -0.59
MCF2L-221ENST00000469415 MPLKIPQ8TAP9 179 aa11.35□□□□□ -0.59
MCF2L-221ENST00000469415 A0A1W2PNM2 257 aa11.35□□□□□ -0.59
MCF2L-221ENST00000469415 KRTAP4-16G5E9R7 235 aaPredicted RBP11.34□□□□□ -0.59
MCF2L-221ENST00000469415 PHF5AQ7RTV0 110 aaKnown RBP11.34□□□□□ -0.59
MCF2L-221ENST00000469415 PRYO14603 147 aa11.33□□□□□ -0.6
MCF2L-221ENST00000469415 F8WDY8 70 aa11.33□□□□□ -0.6
MCF2L-221ENST00000469415 CXCL6P80162 114 aa11.33□□□□□ -0.6
MCF2L-221ENST00000469415 DNAH7Q8WXX0 4024 aa11.33□□□□□ -0.6
MCF2L-221ENST00000469415 TGP01266 2768 aa11.31□□□□□ -0.6
MCF2L-221ENST00000469415 KRTAP11-1Q8IUC1 163 aa11.31□□□□□ -0.6
MCF2L-221ENST00000469415 PRO0628Q9UI54 55 aa11.29□□□□□ -0.6
MCF2L-221ENST00000469415 SPRR1AP35321 89 aa11.28□□□□□ -0.6
MCF2L-221ENST00000469415 FP248Q71RG6 208 aaPredicted RBP11.28□□□□□ -0.6
MCF2L-221ENST00000469415 APLNQ9ULZ1 77 aa11.28□□□□□ -0.6
MCF2L-221ENST00000469415 TRAV7A0A075B6U4 112 aa11.27□□□□□ -0.6
MCF2L-221ENST00000469415 PLA2G2DQ9UNK4 145 aa11.27□□□□□ -0.6
MCF2L-221ENST00000469415 IGKV4-1P06312 121 aa11.27□□□□□ -0.61
MCF2L-221ENST00000469415 DNAH1Q9P2D7 4330 aa11.27□□□□□ -0.61
MCF2L-221ENST00000469415 IGLV5-48A0A075B6I7 105 aa11.26□□□□□ -0.61
MCF2L-221ENST00000469415 LRCOL1A6NCL2 159 aa11.25□□□□□ -0.61
MCF2L-221ENST00000469415 F8WEM9 126 aa11.25□□□□□ -0.61
MCF2L-221ENST00000469415 LINC00476Q8WZB0 136 aa11.25□□□□□ -0.61
MCF2L-221ENST00000469415 C16orf90A8MZG2 172 aa11.25□□□□□ -0.61
MCF2L-221ENST00000469415 PLECQ15149 4684 aaKnown RBP11.24□□□□□ -0.61
MCF2L-221ENST00000469415 IGLV5-37A0A075B6J1 123 aa11.24□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 46.4 ms