RNA–Protein interactions for RNA: ENST00000463727.1

PTPRE-205, Transcript of protein tyrosine phosphatase, receptor type E, humanhuman

TSL 1 (best)

Gene PTPRE, Length 3,944 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRE-205ENST00000463727 TRAV10A0A0B4J240 114 aa6.96□□□□□ -1.29
PTPRE-205ENST00000463727 LINC01556Q5JQF7 62 aa6.96□□□□□ -1.3
PTPRE-205ENST00000463727 IGKV2-24A0A0C4DH68 120 aa6.95□□□□□ -1.3
PTPRE-205ENST00000463727 Q8N9L7 120 aa6.95□□□□□ -1.3
PTPRE-205ENST00000463727 M0R2N4 97 aa6.94□□□□□ -1.3
PTPRE-205ENST00000463727 Q6ZRP5 223 aa6.94□□□□□ -1.3
PTPRE-205ENST00000463727 C7orf33Q8WU49 177 aa6.94□□□□□ -1.3
PTPRE-205ENST00000463727 C1orf137Q5JT78 98 aa6.94□□□□□ -1.3
PTPRE-205ENST00000463727 HIGD2AQ9BW72 106 aa6.94□□□□□ -1.3
PTPRE-205ENST00000463727 SERP1Q9Y6X1 66 aa6.93□□□□□ -1.3
PTPRE-205ENST00000463727 ANK3Q12955 4377 aaKnown RBP6.93□□□□□ -1.3
PTPRE-205ENST00000463727 LINC00528Q8N1L1 170 aa6.93□□□□□ -1.3
PTPRE-205ENST00000463727 TRBV7-4A0A0J9YYF1 115 aa6.92□□□□□ -1.3
PTPRE-205ENST00000463727 HRCT1Q6UXD1 115 aa6.92□□□□□ -1.3
PTPRE-205ENST00000463727 TMEM254Q8TBM7 123 aa6.92□□□□□ -1.3
PTPRE-205ENST00000463727 PRB2P02812 416 aaPredicted RBP6.91□□□□□ -1.3
PTPRE-205ENST00000463727 C15orf56Q8N910 161 aa6.91□□□□□ -1.3
PTPRE-205ENST00000463727 ATP5EP56381 51 aaPredicted RBP6.91□□□□□ -1.3
PTPRE-205ENST00000463727 TM2D3Q9BRN9 247 aa6.9□□□□□ -1.3
PTPRE-205ENST00000463727 PRYO14603 147 aa6.9□□□□□ -1.3
PTPRE-205ENST00000463727 NIPBLQ6KC79 2804 aaeCLIP6.9□□□□□ -1.3
PTPRE-205ENST00000463727 SMIM26A0A096LP01 95 aa6.89□□□□□ -1.31
PTPRE-205ENST00000463727 MRPL55Q7Z7F7 128 aaKnown RBP6.89□□□□□ -1.31
PTPRE-205ENST00000463727 CYSTM1Q9H1C7 97 aa6.89□□□□□ -1.31
PTPRE-205ENST00000463727 FAM30AQ9NZY2 134 aa6.88□□□□□ -1.31
PTPRE-205ENST00000463727 SERTAD4-AS1Q5TG53 156 aa6.87□□□□□ -1.31
PTPRE-205ENST00000463727 KCNQ1DNQ9H478 68 aa6.87□□□□□ -1.31
PTPRE-205ENST00000463727 IGLV2-33A0A075B6J2 118 aaPredicted RBP6.87□□□□□ -1.31
PTPRE-205ENST00000463727 MP68P56378 58 aa6.87□□□□□ -1.31
PTPRE-205ENST00000463727 Q6ZRX8 168 aa6.87□□□□□ -1.31
PTPRE-205ENST00000463727 UBE2AP49459 152 aa6.86□□□□□ -1.31
PTPRE-205ENST00000463727 REG3GQ6UW15 175 aa6.86□□□□□ -1.31
PTPRE-205ENST00000463727 KLKP1Q107X0 134 aa6.86□□□□□ -1.31
PTPRE-205ENST00000463727 MPLKIPQ8TAP9 179 aa6.86□□□□□ -1.31
PTPRE-205ENST00000463727 OTOGQ6ZRI0 2925 aa6.85□□□□□ -1.31
PTPRE-205ENST00000463727 DNAH10OSP0CZ25 163 aa6.85□□□□□ -1.31
PTPRE-205ENST00000463727 KRTAP10-11P60412 298 aa6.85□□□□□ -1.31
PTPRE-205ENST00000463727 C4orf26Q17RF5 130 aa6.85□□□□□ -1.31
PTPRE-205ENST00000463727 H7BZZ5 65 aa6.84□□□□□ -1.31
PTPRE-205ENST00000463727 PKIGQ9Y2B9 76 aa6.84□□□□□ -1.31
PTPRE-205ENST00000463727 Q8N377 158 aa6.84□□□□□ -1.31
PTPRE-205ENST00000463727 ST20-AS1Q8NBB2 130 aa6.83□□□□□ -1.32
PTPRE-205ENST00000463727 A0A096LNI7 61 aa6.83□□□□□ -1.32
PTPRE-205ENST00000463727 FAM168BA1KXE4 195 aa6.83□□□□□ -1.32
PTPRE-205ENST00000463727 C14orf177Q52M58 125 aa6.83□□□□□ -1.32
PTPRE-205ENST00000463727 LINC00588Q9Y4M8 146 aa6.83□□□□□ -1.32
PTPRE-205ENST00000463727 A0A1B0GW54 56 aa6.83□□□□□ -1.32
PTPRE-205ENST00000463727 WFDC13Q8IUB5 93 aa6.83□□□□□ -1.32
PTPRE-205ENST00000463727 Q8NBF4 154 aa6.82□□□□□ -1.32
PTPRE-205ENST00000463727 SMIM29Q86T20 159 aa6.82□□□□□ -1.32
PTPRE-205ENST00000463727 KRTAP24-1Q3LI83 254 aa6.81□□□□□ -1.32
PTPRE-205ENST00000463727 BRK1Q8WUW1 75 aa6.81□□□□□ -1.32
PTPRE-205ENST00000463727 IGLV1-50A0A075B6I6 118 aa6.81□□□□□ -1.32
PTPRE-205ENST00000463727 PRLHP81277 87 aa6.81□□□□□ -1.32
PTPRE-205ENST00000463727 CDK2AP2O75956 126 aa6.8□□□□□ -1.32
PTPRE-205ENST00000463727 NSD1Q96L73 2696 aaPredicted RBP6.8□□□□□ -1.32
PTPRE-205ENST00000463727 A0A087WSZ3 146 aa6.8□□□□□ -1.32
PTPRE-205ENST00000463727 B9D2Q9BPU9 175 aa6.8□□□□□ -1.32
PTPRE-205ENST00000463727 NDUFB1O75438 58 aa6.8□□□□□ -1.32
PTPRE-205ENST00000463727 IGKV4-1P06312 121 aa6.8□□□□□ -1.32
PTPRE-205ENST00000463727 DEFB116Q30KQ4 102 aa6.8□□□□□ -1.32
PTPRE-205ENST00000463727 HIVEP1P15822 2718 aa6.79□□□□□ -1.32
PTPRE-205ENST00000463727 H0Y9J4 135 aa6.79□□□□□ -1.32
PTPRE-205ENST00000463727 TLX1NBP0CAT3 122 aa6.78□□□□□ -1.32
PTPRE-205ENST00000463727 PRR4Q16378 134 aa6.78□□□□□ -1.32
PTPRE-205ENST00000463727 NOTCH1P46531 2555 aa6.78□□□□□ -1.32
PTPRE-205ENST00000463727 ERC2-IT1O76042 136 aa6.78□□□□□ -1.32
PTPRE-205ENST00000463727 KRTAP26-1Q6PEX3 210 aa6.77□□□□□ -1.33
PTPRE-205ENST00000463727 LINC00476Q8WZB0 136 aa6.77□□□□□ -1.33
PTPRE-205ENST00000463727 Q9BRP9 147 aa6.77□□□□□ -1.33
PTPRE-205ENST00000463727 IGLV5-48A0A075B6I7 105 aa6.77□□□□□ -1.33
PTPRE-205ENST00000463727 PLA2G2DQ9UNK4 145 aa6.77□□□□□ -1.33
PTPRE-205ENST00000463727 HCG22E2RYF7 251 aa6.76□□□□□ -1.33
PTPRE-205ENST00000463727 CASC10Q5T4H9 136 aa6.76□□□□□ -1.33
PTPRE-205ENST00000463727 A0A0U1RQV1 116 aa6.76□□□□□ -1.33
PTPRE-205ENST00000463727 A0A1W2PNM2 257 aa6.75□□□□□ -1.33
PTPRE-205ENST00000463727 VWFP04275 2813 aa6.75□□□□□ -1.33
PTPRE-205ENST00000463727 LRCOL1A6NCL2 159 aa6.75□□□□□ -1.33
PTPRE-205ENST00000463727 V9GYY9 64 aa6.74□□□□□ -1.33
PTPRE-205ENST00000463727 TENM1Q9UKZ4 2725 aa6.74□□□□□ -1.33
PTPRE-205ENST00000463727 STAB1Q9NY15 2570 aa6.73□□□□□ -1.33
PTPRE-205ENST00000463727 NDUFS5O43920 106 aa6.73□□□□□ -1.33
PTPRE-205ENST00000463727 LINC00208Q96KT6 92 aa6.73□□□□□ -1.33
PTPRE-205ENST00000463727 PRO0628Q9UI54 55 aa6.73□□□□□ -1.33
PTPRE-205ENST00000463727 K7EQZ3 153 aa6.73□□□□□ -1.33
PTPRE-205ENST00000463727 MGAM2Q2M2H8 2515 aa6.72□□□□□ -1.33
PTPRE-205ENST00000463727 C16orf90A8MZG2 172 aa6.72□□□□□ -1.33
PTPRE-205ENST00000463727 OCR1Q9BZK8 76 aa6.71□□□□□ -1.34
PTPRE-205ENST00000463727 OXTP01178 125 aa6.71□□□□□ -1.34
PTPRE-205ENST00000463727 IGLV5-37A0A075B6J1 123 aa6.7□□□□□ -1.34
PTPRE-205ENST00000463727 CASC2Q6XLA1 102 aa6.7□□□□□ -1.34
PTPRE-205ENST00000463727 LINC00474Q9P2X8 69 aa6.7□□□□□ -1.34
PTPRE-205ENST00000463727 A0A0G2JQZ4 141 aa6.69□□□□□ -1.34
PTPRE-205ENST00000463727 A0A1W2PNN7 141 aa6.69□□□□□ -1.34
PTPRE-205ENST00000463727 SEC61GP60059 68 aa6.69□□□□□ -1.34
PTPRE-205ENST00000463727 C1orf195Q5TG92 126 aa6.69□□□□□ -1.34
PTPRE-205ENST00000463727 IGFL1Q6UW32 110 aa6.69□□□□□ -1.34
PTPRE-205ENST00000463727 IGLV9-49A0A0B4J1Y8 123 aa6.68□□□□□ -1.34
PTPRE-205ENST00000463727 PHF5AQ7RTV0 110 aaKnown RBP6.68□□□□□ -1.34
PTPRE-205ENST00000463727 COL6A5A8TX70 2615 aa6.68□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms