RNA–Protein interactions for RNA: ENST00000460289.5

PTPN4-208, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 4

Gene PTPN4, Length 577 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-208ENST00000460289 SPANXCQ9NY87 97 aa13.37□□□□□ -0.27
PTPN4-208ENST00000460289 CBY1Q9Y3M2 126 aa13.37□□□□□ -0.27
PTPN4-208ENST00000460289 RNF213Q63HN8 5207 aa13.36□□□□□ -0.27
PTPN4-208ENST00000460289 TRAV23DV6A0A075B6W5 121 aa13.36□□□□□ -0.27
PTPN4-208ENST00000460289 Q6ZRX8 168 aa13.35□□□□□ -0.27
PTPN4-208ENST00000460289 TTTY13Q9BZ97 58 aa13.35□□□□□ -0.27
PTPN4-208ENST00000460289 JOSD1Q15040 202 aaPredicted RBP13.34□□□□□ -0.27
PTPN4-208ENST00000460289 ZNF73O43830 326 aaPredicted RBP13.33□□□□□ -0.28
PTPN4-208ENST00000460289 SPAG11AQ6PDA7 123 aa13.33□□□□□ -0.28
PTPN4-208ENST00000460289 PPDPFQ9H3Y8 114 aa13.32□□□□□ -0.28
PTPN4-208ENST00000460289 HINT1P49773 126 aaPredicted RBP13.31□□□□□ -0.28
PTPN4-208ENST00000460289 LINC00483Q53H64 154 aa13.31□□□□□ -0.28
PTPN4-208ENST00000460289 SCGB1D4Q6XE38 83 aa13.31□□□□□ -0.28
PTPN4-208ENST00000460289 Q9BRP9 147 aa13.31□□□□□ -0.28
PTPN4-208ENST00000460289 GAGE2AQ6NT46 116 aa13.3□□□□□ -0.28
PTPN4-208ENST00000460289 OR13C6PQ8NH95 151 aa13.3□□□□□ -0.28
PTPN4-208ENST00000460289 ERC2-IT1O76042 136 aa13.29□□□□□ -0.28
PTPN4-208ENST00000460289 ANKRD39Q53RE8 183 aa13.29□□□□□ -0.28
PTPN4-208ENST00000460289 C4orf48Q5BLP8 95 aa13.29□□□□□ -0.28
PTPN4-208ENST00000460289 LINC00518Q8N0U6 118 aa13.29□□□□□ -0.28
PTPN4-208ENST00000460289 ATOH7Q8N100 152 aa13.28□□□□□ -0.28
PTPN4-208ENST00000460289 COPS9Q8WXC6 57 aa13.27□□□□□ -0.29
PTPN4-208ENST00000460289 SPANXDQ9BXN6 97 aa13.27□□□□□ -0.29
PTPN4-208ENST00000460289 S100A2P29034 98 aa13.26□□□□□ -0.29
PTPN4-208ENST00000460289 SNRPEP62304 92 aaKnown RBP13.26□□□□□ -0.29
PTPN4-208ENST00000460289 RETNLBQ9BQ08 111 aa13.25□□□□□ -0.29
PTPN4-208ENST00000460289 HIST3H2BBQ8N257 126 aa13.24□□□□□ -0.29
PTPN4-208ENST00000460289 Q8NBF4 154 aa13.24□□□□□ -0.29
PTPN4-208ENST00000460289 Q6ZVH6 145 aa13.23□□□□□ -0.29
PTPN4-208ENST00000460289 IFITM1P13164 125 aa13.22□□□□□ -0.29
PTPN4-208ENST00000460289 HIST1H2BLQ99880 126 aa13.22□□□□□ -0.29
PTPN4-208ENST00000460289 C5orf52A6NGY3 159 aa13.21□□□□□ -0.29
PTPN4-208ENST00000460289 S100A6P06703 90 aa13.21□□□□□ -0.29
PTPN4-208ENST00000460289 SSBP3-AS1Q7Z2R9 100 aa13.2□□□□□ -0.3
PTPN4-208ENST00000460289 PCP2Q8IVA1 136 aa13.2□□□□□ -0.3
PTPN4-208ENST00000460289 IGLV9-49A0A0B4J1Y8 123 aa13.19□□□□□ -0.3
PTPN4-208ENST00000460289 SPINK1P00995 79 aa13.18□□□□□ -0.3
PTPN4-208ENST00000460289 DHRS4-AS1Q9P1J3 65 aa13.18□□□□□ -0.3
PTPN4-208ENST00000460289 MOBPQ13875 183 aa13.17□□□□□ -0.3
PTPN4-208ENST00000460289 IGLV7-46A0A075B6I9 117 aa13.16□□□□□ -0.3
PTPN4-208ENST00000460289 HSBP1L1C9JCN9 74 aa13.15□□□□□ -0.3
PTPN4-208ENST00000460289 MUSTN1Q8IVN3 82 aa13.15□□□□□ -0.3
PTPN4-208ENST00000460289 C6orf99Q4VX62 202 aa13.14□□□□□ -0.31
PTPN4-208ENST00000460289 ST20-AS1Q8NBB2 130 aa13.14□□□□□ -0.31
PTPN4-208ENST00000460289 COX7BP24311 80 aa13.13□□□□□ -0.31
PTPN4-208ENST00000460289 ELOF1P60002 83 aaKnown RBP13.12□□□□□ -0.31
PTPN4-208ENST00000460289 TPRXLQ17RH7 258 aa13.12□□□□□ -0.31
PTPN4-208ENST00000460289 A6NDN8 102 aa13.11□□□□□ -0.31
PTPN4-208ENST00000460289 FP248Q71RG6 208 aaPredicted RBP13.11□□□□□ -0.31
PTPN4-208ENST00000460289 TRBV7-6A0A0J9YX20 115 aa13.1□□□□□ -0.31
PTPN4-208ENST00000460289 C9orf153Q5TBE3 101 aa13.1□□□□□ -0.31
PTPN4-208ENST00000460289 SLC25A34Q6PIV7 304 aa13.1□□□□□ -0.31
PTPN4-208ENST00000460289 RPS29P62273 56 aaKnown RBP13.09□□□□□ -0.31
PTPN4-208ENST00000460289 CDIP1Q9H305 208 aa13.09□□□□□ -0.31
PTPN4-208ENST00000460289 SPRR1BP22528 89 aa13.08□□□□□ -0.32
PTPN4-208ENST00000460289 TRAV13-2A0A0B4J235 113 aa13.07□□□□□ -0.32
PTPN4-208ENST00000460289 A0A1B0GWB2 263 aa13.05□□□□□ -0.32
PTPN4-208ENST00000460289 SCGB1D1O95968 90 aa13.04□□□□□ -0.32
PTPN4-208ENST00000460289 LAMTOR3Q9UHA4 124 aa13.04□□□□□ -0.32
PTPN4-208ENST00000460289 TAL2Q16559 108 aa13.03□□□□□ -0.32
PTPN4-208ENST00000460289 A4D1N5 150 aa13.02□□□□□ -0.33
PTPN4-208ENST00000460289 SLC25A20O43772 301 aa13.01□□□□□ -0.33
PTPN4-208ENST00000460289 Q8N377 158 aa13□□□□□ -0.33
PTPN4-208ENST00000460289 TEX49A0A1B0GTD5 131 aa12.99□□□□□ -0.33
PTPN4-208ENST00000460289 DEFB105AQ8NG35 78 aa12.99□□□□□ -0.33
PTPN4-208ENST00000460289 SMIM11BQ8TCY0 68 aa12.97□□□□□ -0.33
PTPN4-208ENST00000460289 MUC2Q02817 5179 aa12.97□□□□□ -0.33
PTPN4-208ENST00000460289 NHP2Q9NX24 153 aaKnown RBP12.96□□□□□ -0.33
PTPN4-208ENST00000460289 VAMP3Q15836 100 aa12.94□□□□□ -0.34
PTPN4-208ENST00000460289 COX8AP10176 69 aa12.92□□□□□ -0.34
PTPN4-208ENST00000460289 Q1RN00 199 aa12.92□□□□□ -0.34
PTPN4-208ENST00000460289 KRTAP13-3Q3SY46 172 aa12.92□□□□□ -0.34
PTPN4-208ENST00000460289 IGLV5-48A0A075B6I7 105 aa12.91□□□□□ -0.34
PTPN4-208ENST00000460289 HIST1H4GQ99525 98 aa12.9□□□□□ -0.34
PTPN4-208ENST00000460289 PRO1933Q9H354 126 aa12.9□□□□□ -0.34
PTPN4-208ENST00000460289 A0A0U1RQV1 116 aa12.89□□□□□ -0.35
PTPN4-208ENST00000460289 DLEU1O43261 78 aa12.89□□□□□ -0.35
PTPN4-208ENST00000460289 LIMD2Q9BT23 127 aa12.89□□□□□ -0.35
PTPN4-208ENST00000460289 LINC01547P58512 204 aaPredicted RBP12.88□□□□□ -0.35
PTPN4-208ENST00000460289 HRCT1Q6UXD1 115 aa12.87□□□□□ -0.35
PTPN4-208ENST00000460289 SMIM29Q86T20 159 aa12.87□□□□□ -0.35
PTPN4-208ENST00000460289 CD164Q04900 197 aa12.86□□□□□ -0.35
PTPN4-208ENST00000460289 LINC00575Q6W349 94 aa12.83□□□□□ -0.36
PTPN4-208ENST00000460289 MUC17Q685J3 4493 aa12.82□□□□□ -0.36
PTPN4-208ENST00000460289 C14orf144Q96I85 54 aa12.82□□□□□ -0.36
PTPN4-208ENST00000460289 hADV29S1A0JD25 119 aa12.81□□□□□ -0.36
PTPN4-208ENST00000460289 H7C2G1 150 aa12.81□□□□□ -0.36
PTPN4-208ENST00000460289 SPATA45Q537H7 98 aa12.81□□□□□ -0.36
PTPN4-208ENST00000460289 C12orf57Q99622 126 aa12.81□□□□□ -0.36
PTPN4-208ENST00000460289 PAM16Q9Y3D7 125 aa12.81□□□□□ -0.36
PTPN4-208ENST00000460289 BVES-AS1Q5T3Y7 98 aa12.79□□□□□ -0.36
PTPN4-208ENST00000460289 VAMP8Q9BV40 100 aa12.79□□□□□ -0.36
PTPN4-208ENST00000460289 HIGD1BQ9P298 99 aa12.79□□□□□ -0.36
PTPN4-208ENST00000460289 F8WEM9 126 aa12.75□□□□□ -0.37
PTPN4-208ENST00000460289 ASB16-AS1Q495Z4 193 aa12.75□□□□□ -0.37
PTPN4-208ENST00000460289 Q6ZQY7 126 aa12.75□□□□□ -0.37
PTPN4-208ENST00000460289 Q5XG85 94 aa12.74□□□□□ -0.37
PTPN4-208ENST00000460289 CFC1BP0CG36 223 aa12.73□□□□□ -0.37
PTPN4-208ENST00000460289 CFC1P0CG37 223 aa12.73□□□□□ -0.37
PTPN4-208ENST00000460289 SEC61BP60468 96 aaKnown RBP12.73□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 108.8 ms