RNA–Protein interactions for RNA: ENST00000452182.1

SCN9A-204, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

TSL 1 (best)

Gene SCN9A, Length 1,618 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-204ENST00000452182 CEND1Q8N111 149 aa7.15□□□□□ -1.27
SCN9A-204ENST00000452182 LINC00337Q8N6G1 96 aa7.15□□□□□ -1.27
SCN9A-204ENST00000452182 TMEM126AQ9H061 195 aa7.15□□□□□ -1.27
SCN9A-204ENST00000452182 CBY1Q9Y3M2 126 aa7.14□□□□□ -1.27
SCN9A-204ENST00000452182 TRAV13-2A0A0B4J235 113 aa7.13□□□□□ -1.27
SCN9A-204ENST00000452182 PRYO14603 147 aa7.13□□□□□ -1.27
SCN9A-204ENST00000452182 C1orf137Q5JT78 98 aa7.12□□□□□ -1.27
SCN9A-204ENST00000452182 REG3GQ6UW15 175 aa7.12□□□□□ -1.27
SCN9A-204ENST00000452182 BCE1O60756 84 aa7.12□□□□□ -1.27
SCN9A-204ENST00000452182 SPRR1AP35321 89 aa7.12□□□□□ -1.27
SCN9A-204ENST00000452182 OR13C6PQ8NH95 151 aa7.12□□□□□ -1.27
SCN9A-204ENST00000452182 TRAV23DV6A0A075B6W5 121 aa7.1□□□□□ -1.27
SCN9A-204ENST00000452182 A6NDN8 102 aa7.1□□□□□ -1.27
SCN9A-204ENST00000452182 IGLV7-43P04211 117 aa7.1□□□□□ -1.27
SCN9A-204ENST00000452182 FXYD2P54710 66 aa7.1□□□□□ -1.27
SCN9A-204ENST00000452182 SRRM2Q9UQ35 2752 aaKnown RBP7.1□□□□□ -1.27
SCN9A-204ENST00000452182 A0A0B4J2C4 111 aa7.09□□□□□ -1.27
SCN9A-204ENST00000452182 KRTAP4-16G5E9R7 235 aaPredicted RBP7.09□□□□□ -1.27
SCN9A-204ENST00000452182 CFC1BP0CG36 223 aa7.09□□□□□ -1.27
SCN9A-204ENST00000452182 CFC1P0CG37 223 aa7.09□□□□□ -1.27
SCN9A-204ENST00000452182 ZNF73O43830 326 aaPredicted RBP7.09□□□□□ -1.28
SCN9A-204ENST00000452182 H0Y9J4 135 aa7.08□□□□□ -1.28
SCN9A-204ENST00000452182 CTAG1AP78358 180 aa7.08□□□□□ -1.28
SCN9A-204ENST00000452182 KRTAP13-1Q8IUC0 172 aa7.08□□□□□ -1.28
SCN9A-204ENST00000452182 ZNF861PO60384 105 aa7.07□□□□□ -1.28
SCN9A-204ENST00000452182 SPINK6Q6UWN8 80 aa7.07□□□□□ -1.28
SCN9A-204ENST00000452182 RAB37Q96AX2 223 aa7.07□□□□□ -1.28
SCN9A-204ENST00000452182 KRTAP4-5Q9BYR2 181 aa7.07□□□□□ -1.28
SCN9A-204ENST00000452182 ETDCA0A1B0GVM5 59 aa7.06□□□□□ -1.28
SCN9A-204ENST00000452182 A0A1B0GWB2 263 aa7.06□□□□□ -1.28
SCN9A-204ENST00000452182 M0R143 59 aa7.06□□□□□ -1.28
SCN9A-204ENST00000452182 RPL28P46779 137 aaKnown RBP7.06□□□□□ -1.28
SCN9A-204ENST00000452182 BVES-AS1Q5T3Y7 98 aa7.06□□□□□ -1.28
SCN9A-204ENST00000452182 FAM19A1Q7Z5A9 133 aa7.06□□□□□ -1.28
SCN9A-204ENST00000452182 TRBV7-6A0A0J9YX20 115 aa7.05□□□□□ -1.28
SCN9A-204ENST00000452182 RPL13AP40429 203 aaKnown RBP7.05□□□□□ -1.28
SCN9A-204ENST00000452182 UBE2AP49459 152 aa7.05□□□□□ -1.28
SCN9A-204ENST00000452182 HINT1P49773 126 aaPredicted RBP7.05□□□□□ -1.28
SCN9A-204ENST00000452182 DIRC1Q969H9 104 aa7.05□□□□□ -1.28
SCN9A-204ENST00000452182 PKHD1L1Q86WI1 4243 aa7.05□□□□□ -1.28
SCN9A-204ENST00000452182 B5MCH6 92 aa7.05□□□□□ -1.28
SCN9A-204ENST00000452182 Q6ZRX8 168 aa7.05□□□□□ -1.28
SCN9A-204ENST00000452182 SMIM11BQ8TCY0 68 aa7.05□□□□□ -1.28
SCN9A-204ENST00000452182 NHP2Q9NX24 153 aaKnown RBP7.05□□□□□ -1.28
SCN9A-204ENST00000452182 PRO1854Q9UHT4 67 aa7.05□□□□□ -1.28
SCN9A-204ENST00000452182 PRLHP81277 87 aa7.04□□□□□ -1.28
SCN9A-204ENST00000452182 C6orf99Q4VX62 202 aa7.04□□□□□ -1.28
SCN9A-204ENST00000452182 ELOF1P60002 83 aaKnown RBP7.02□□□□□ -1.29
SCN9A-204ENST00000452182 ABCA13Q86UQ4 5058 aa7.01□□□□□ -1.29
SCN9A-204ENST00000452182 INAFM2P0DMQ5 153 aa7.01□□□□□ -1.29
SCN9A-204ENST00000452182 COX7BP24311 80 aa7.01□□□□□ -1.29
SCN9A-204ENST00000452182 K7ERJ3 54 aa7□□□□□ -1.29
SCN9A-204ENST00000452182 VAMP3Q15836 100 aa7□□□□□ -1.29
SCN9A-204ENST00000452182 SMCR5Q8TEV8 140 aa7□□□□□ -1.29
SCN9A-204ENST00000452182 Q9BRP9 147 aa7□□□□□ -1.29
SCN9A-204ENST00000452182 H7C2G1 150 aa6.99□□□□□ -1.29
SCN9A-204ENST00000452182 HIGD2AQ9BW72 106 aa6.99□□□□□ -1.29
SCN9A-204ENST00000452182 DHRS4-AS1Q9P1J3 65 aa6.99□□□□□ -1.29
SCN9A-204ENST00000452182 Q1RN00 199 aa6.98□□□□□ -1.29
SCN9A-204ENST00000452182 H0YGX0 51 aa6.96□□□□□ -1.3
SCN9A-204ENST00000452182 TSPAN13O95857 204 aa6.96□□□□□ -1.3
SCN9A-204ENST00000452182 PCLOQ9Y6V0 5065 aa6.96□□□□□ -1.3
SCN9A-204ENST00000452182 ERC2-IT1O76042 136 aa6.95□□□□□ -1.3
SCN9A-204ENST00000452182 ZNF706Q9Y5V0 76 aaPredicted RBP6.95□□□□□ -1.3
SCN9A-204ENST00000452182 TRIAP1O43715 76 aa6.94□□□□□ -1.3
SCN9A-204ENST00000452182 KRTAP1-4P0C5Y4 121 aa6.94□□□□□ -1.3
SCN9A-204ENST00000452182 BATFQ16520 125 aa6.94□□□□□ -1.3
SCN9A-204ENST00000452182 LINC00575Q6W349 94 aa6.94□□□□□ -1.3
SCN9A-204ENST00000452182 SLC25A20O43772 301 aa6.94□□□□□ -1.3
SCN9A-204ENST00000452182 SPRR4Q96PI1 79 aa6.94□□□□□ -1.3
SCN9A-204ENST00000452182 COX6CP09669 75 aa6.93□□□□□ -1.3
SCN9A-204ENST00000452182 PSMB2P49721 201 aa6.93□□□□□ -1.3
SCN9A-204ENST00000452182 XP32Q5T750 250 aa6.93□□□□□ -1.3
SCN9A-204ENST00000452182 MYCBP2O75592 4640 aa6.93□□□□□ -1.3
SCN9A-204ENST00000452182 hADV29S1A0JD25 119 aa6.92□□□□□ -1.3
SCN9A-204ENST00000452182 PCP4L1A6NKN8 68 aa6.92□□□□□ -1.3
SCN9A-204ENST00000452182 OXTP01178 125 aa6.92□□□□□ -1.3
SCN9A-204ENST00000452182 LINC01600Q96MT4 127 aa6.92□□□□□ -1.3
SCN9A-204ENST00000452182 SNHG12Q9BXW3 62 aa6.92□□□□□ -1.3
SCN9A-204ENST00000452182 A0A1B0GX51 115 aa6.91□□□□□ -1.3
SCN9A-204ENST00000452182 FAM229BQ4G0N7 80 aa6.91□□□□□ -1.3
SCN9A-204ENST00000452182 LINC00483Q53H64 154 aa6.91□□□□□ -1.3
SCN9A-204ENST00000452182 FAT3Q8TDW7 4589 aa6.91□□□□□ -1.3
SCN9A-204ENST00000452182 SNCGO76070 127 aa6.9□□□□□ -1.3
SCN9A-204ENST00000452182 LRP1Q07954 4544 aaKnown RBP6.9□□□□□ -1.3
SCN9A-204ENST00000452182 FLG2Q5D862 2391 aaPredicted RBP6.9□□□□□ -1.3
SCN9A-204ENST00000452182 KRTAP29-1A8MX34 341 aaPredicted RBP6.9□□□□□ -1.31
SCN9A-204ENST00000452182 ST20-AS1Q8NBB2 130 aa6.9□□□□□ -1.31
SCN9A-204ENST00000452182 IGLV5-48A0A075B6I7 105 aa6.89□□□□□ -1.31
SCN9A-204ENST00000452182 SPRR1BP22528 89 aa6.89□□□□□ -1.31
SCN9A-204ENST00000452182 FAM218AQ96MZ4 157 aa6.89□□□□□ -1.31
SCN9A-204ENST00000452182 GAGE2AQ6NT46 116 aa6.88□□□□□ -1.31
SCN9A-204ENST00000452182 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP6.88□□□□□ -1.31
SCN9A-204ENST00000452182 TAX1BP3O14907 124 aa6.87□□□□□ -1.31
SCN9A-204ENST00000452182 CRYGAP11844 174 aa6.87□□□□□ -1.31
SCN9A-204ENST00000452182 LINC01547P58512 204 aaPredicted RBP6.87□□□□□ -1.31
SCN9A-204ENST00000452182 COL5A1-AS1Q5SY13 56 aa6.87□□□□□ -1.31
SCN9A-204ENST00000452182 Q6ZQY7 126 aa6.87□□□□□ -1.31
SCN9A-204ENST00000452182 ANAPC11Q9NYG5 84 aa6.87□□□□□ -1.31
SCN9A-204ENST00000452182 A0A087X002 238 aa6.87□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 69.8 ms