RNA–Protein interactions for RNA: ENST00000443443.1

VPS50-206, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 2

Gene VPS50, Length 554 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-206ENST00000443443 SMIM27A0A1W2PRY6 76 aa1.72□□□□□ -2.13
VPS50-206ENST00000443443 COX6B2Q6YFQ2 88 aa1.72□□□□□ -2.13
VPS50-206ENST00000443443 PRO0255Q9UI72 69 aa1.72□□□□□ -2.13
VPS50-206ENST00000443443 ASXL3Q9C0F0 2248 aa1.72□□□□□ -2.13
VPS50-206ENST00000443443 DDX60LQ5H9U9 1706 aaKnown RBP1.71□□□□□ -2.13
VPS50-206ENST00000443443 H0YGX0 51 aa1.71□□□□□ -2.14
VPS50-206ENST00000443443 Q6ZSA8 131 aa1.71□□□□□ -2.14
VPS50-206ENST00000443443 FLG2Q5D862 2391 aaPredicted RBP1.7□□□□□ -2.14
VPS50-206ENST00000443443 CRIP1P50238 77 aa1.7□□□□□ -2.14
VPS50-206ENST00000443443 COX6A2Q02221 97 aa1.7□□□□□ -2.14
VPS50-206ENST00000443443 Q8IZM0 81 aa1.7□□□□□ -2.14
VPS50-206ENST00000443443 FBN3Q75N90 2809 aa1.7□□□□□ -2.14
VPS50-206ENST00000443443 COX6B1P14854 86 aa1.69□□□□□ -2.14
VPS50-206ENST00000443443 CNTRLQ7Z7A1 2325 aa1.68□□□□□ -2.14
VPS50-206ENST00000443443 TNRC6CQ9HCJ0 1690 aaKnown RBP1.68□□□□□ -2.14
VPS50-206ENST00000443443 FAM208AQ9UK61 1670 aaKnown RBP1.68□□□□□ -2.14
VPS50-206ENST00000443443 CDKN2A-AS1Q9UH64 79 aa1.68□□□□□ -2.14
VPS50-206ENST00000443443 SORL1Q92673 2214 aa1.68□□□□□ -2.14
VPS50-206ENST00000443443 FCGBPQ9Y6R7 5405 aaPredicted RBP1.68□□□□□ -2.14
VPS50-206ENST00000443443 C10orf95Q9H7T3 257 aa1.67□□□□□ -2.14
VPS50-206ENST00000443443 TNCP24821 2201 aa1.67□□□□□ -2.14
VPS50-206ENST00000443443 LINC01546A6NGU7 62 aa1.66□□□□□ -2.14
VPS50-206ENST00000443443 PRO3102Q9H379 93 aa1.66□□□□□ -2.14
VPS50-206ENST00000443443 TIMM8BQ9Y5J9 83 aaPredicted RBP1.66□□□□□ -2.14
VPS50-206ENST00000443443 NDUFA3O95167 84 aa1.65□□□□□ -2.15
VPS50-206ENST00000443443 LINC00158P58513 81 aa1.65□□□□□ -2.15
VPS50-206ENST00000443443 URB1O60287 2271 aaKnown RBP1.65□□□□□ -2.15
VPS50-206ENST00000443443 ANKRD17O75179 2603 aaKnown RBP1.65□□□□□ -2.15
VPS50-206ENST00000443443 KNTC1P50748 2209 aa1.64□□□□□ -2.15
VPS50-206ENST00000443443 ZDBF2Q9HCK1 2354 aa1.64□□□□□ -2.15
VPS50-206ENST00000443443 TMEM167BQ9NRX6 74 aa1.64□□□□□ -2.15
VPS50-206ENST00000443443 GOLGA4Q13439 2230 aaKnown RBP1.62□□□□□ -2.15
VPS50-206ENST00000443443 DEPDC5O75140 1603 aa1.62□□□□□ -2.15
VPS50-206ENST00000443443 AHCTF1Q8WYP5 2266 aa1.61□□□□□ -2.15
VPS50-206ENST00000443443 TRPM2O94759 1503 aa1.61□□□□□ -2.15
VPS50-206ENST00000443443 A0A0D9SG42 100 aa1.61□□□□□ -2.15
VPS50-206ENST00000443443 SPINK4O60575 86 aa1.61□□□□□ -2.15
VPS50-206ENST00000443443 KRTAP21-3Q3LHN1 58 aa1.61□□□□□ -2.15
VPS50-206ENST00000443443 LYNX1G3V0Z9 82 aa1.6□□□□□ -2.15
VPS50-206ENST00000443443 Q5VSD8 79 aa1.6□□□□□ -2.15
VPS50-206ENST00000443443 APLNQ9ULZ1 77 aa1.6□□□□□ -2.15
VPS50-206ENST00000443443 TOGARAM1Q9Y4F4 1720 aa1.6□□□□□ -2.15
VPS50-206ENST00000443443 JMJD1CQ15652 2540 aa1.6□□□□□ -2.15
VPS50-206ENST00000443443 NAV3Q8IVL0 2385 aa1.59□□□□□ -2.16
VPS50-206ENST00000443443 FAM208BQ5VWN6 2430 aa1.59□□□□□ -2.16
VPS50-206ENST00000443443 SPRR1AP35321 89 aa1.58□□□□□ -2.16
VPS50-206ENST00000443443 MINOS1Q5TGZ0 78 aa1.58□□□□□ -2.16
VPS50-206ENST00000443443 CACNA1EQ15878 2313 aa1.58□□□□□ -2.16
VPS50-206ENST00000443443 DEFB105AQ8NG35 78 aa1.57□□□□□ -2.16
VPS50-206ENST00000443443 LINC00308Q8TCZ7 52 aa1.57□□□□□ -2.16
VPS50-206ENST00000443443 C4AP0C0L4 1744 aa1.57□□□□□ -2.16
VPS50-206ENST00000443443 C4BP0C0L5 1744 aa1.57□□□□□ -2.16
VPS50-206ENST00000443443 ATP7AQ04656 1500 aa1.56□□□□□ -2.16
VPS50-206ENST00000443443 LOC730098B7Z3J9 87 aa1.56□□□□□ -2.16
VPS50-206ENST00000443443 H0YAA0 97 aa1.56□□□□□ -2.16
VPS50-206ENST00000443443 H1FX-AS1Q4G0G2 97 aa1.56□□□□□ -2.16
VPS50-206ENST00000443443 SPRR1BP22528 89 aa1.55□□□□□ -2.16
VPS50-206ENST00000443443 RP1L1Q8IWN7 2480 aaPredicted RBP1.55□□□□□ -2.16
VPS50-206ENST00000443443 DDX60Q8IY21 1712 aaKnown RBP1.54□□□□□ -2.16
VPS50-206ENST00000443443 LELP1Q5T871 98 aa1.54□□□□□ -2.16
VPS50-206ENST00000443443 WFDC13Q8IUB5 93 aa1.54□□□□□ -2.16
VPS50-206ENST00000443443 C6orf48Q9UBA6 75 aa1.54□□□□□ -2.16
VPS50-206ENST00000443443 NFAT5O94916 1531 aa1.53□□□□□ -2.16
VPS50-206ENST00000443443 TENM1Q9UKZ4 2725 aa1.53□□□□□ -2.16
VPS50-206ENST00000443443 SAMD9LQ8IVG5 1584 aa1.51□□□□□ -2.17
VPS50-206ENST00000443443 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP1.51□□□□□ -2.174e-7■■■■□ 26.6
VPS50-206ENST00000443443 IAPPP10997 89 aa1.51□□□□□ -2.17
VPS50-206ENST00000443443 LMO7Q8WWI1 1683 aa1.51□□□□□ -2.17
VPS50-206ENST00000443443 KRTAP10-4P60372 401 aaPredicted RBP1.5□□□□□ -2.17
VPS50-206ENST00000443443 PRB3Q04118 309 aaPredicted RBP1.5□□□□□ -2.17
VPS50-206ENST00000443443 IQGAP1P46940 1657 aa1.5□□□□□ -2.17
VPS50-206ENST00000443443 SMIM2Q9BVW6 85 aa1.48□□□□□ -2.17
VPS50-206ENST00000443443 CDC42BPAQ5VT25 1732 aa1.48□□□□□ -2.17
VPS50-206ENST00000443443 DEFB130BP0DP73 79 aa1.47□□□□□ -2.17
VPS50-206ENST00000443443 DEFB130AP0DP74 79 aa1.47□□□□□ -2.17
VPS50-206ENST00000443443 SNRPGP62308 76 aaKnown RBP1.47□□□□□ -2.17
VPS50-206ENST00000443443 TFF3Q07654 80 aa1.47□□□□□ -2.17
VPS50-206ENST00000443443 KLK9Q2XQG4 91 aa1.47□□□□□ -2.17
VPS50-206ENST00000443443 CNOT1A5YKK6 2376 aaKnown RBP1.47□□□□□ -2.17
VPS50-206ENST00000443443 ROS1P08922 2347 aa1.45□□□□□ -2.18
VPS50-206ENST00000443443 KIF21BO75037 1637 aa1.44□□□□□ -2.18
VPS50-206ENST00000443443 DOPEY2Q9Y3R5 2298 aa1.44□□□□□ -2.18
VPS50-206ENST00000443443 BPTFQ12830 3046 aa1.43□□□□□ -2.18
VPS50-206ENST00000443443 RPS27P42677 84 aaKnown RBP1.43□□□□□ -2.18
VPS50-206ENST00000443443 RPS27LQ71UM5 84 aaKnown RBP1.43□□□□□ -2.18
VPS50-206ENST00000443443 COL6A6A6NMZ7 2263 aa1.43□□□□□ -2.18
VPS50-206ENST00000443443 PIEZO2Q9H5I5 2752 aa1.43□□□□□ -2.18
VPS50-206ENST00000443443 PTPRQQ9UMZ3 2332 aa1.42□□□□□ -2.18
VPS50-206ENST00000443443 ASH1LQ9NR48 2969 aaKnown RBP1.42□□□□□ -2.18
VPS50-206ENST00000443443 NDUFA1O15239 70 aa1.41□□□□□ -2.18
VPS50-206ENST00000443443 HELZ2Q9BYK8 2649 aaKnown RBP1.4□□□□□ -2.18
VPS50-206ENST00000443443 PTPRZ1P23471 2315 aaPredicted RBP1.4□□□□□ -2.19
VPS50-206ENST00000443443 USF3Q68DE3 2245 aa1.39□□□□□ -2.19
VPS50-206ENST00000443443 WT1-ASQ06250 92 aa1.39□□□□□ -2.19
VPS50-206ENST00000443443 PLCE1Q9P212 2302 aa1.39□□□□□ -2.19
VPS50-206ENST00000443443 H3BUA1 57 aa1.38□□□□□ -2.19
VPS50-206ENST00000443443 DEFB109BQ30KR1 87 aa1.38□□□□□ -2.19
VPS50-206ENST00000443443 WFDC10BQ8IUB3 73 aa1.37□□□□□ -2.19
VPS50-206ENST00000443443 KAAG1Q9UBP8 84 aa1.34□□□□□ -2.19
VPS50-206ENST00000443443 C2CD3Q4AC94 2353 aa1.34□□□□□ -2.2
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms