RNA–Protein interactions for RNA: ENST00000429895.5

PTPRF-206, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 6,312 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-206ENST00000429895 SETD2Q9BYW2 2564 aaPredicted RBP10.1□□□□□ -0.79
PTPRF-206ENST00000429895 UQCR11O14957 56 aa10.1□□□□□ -0.79
PTPRF-206ENST00000429895 C19orf73Q9NVV2 129 aa10.1□□□□□ -0.79
PTPRF-206ENST00000429895 PRR15Q8IV56 129 aa10.09□□□□□ -0.79
PTPRF-206ENST00000429895 RPS28P62857 69 aaKnown RBP10.08□□□□□ -0.8
PTPRF-206ENST00000429895 ZNF462Q96JM2 2506 aa10.08□□□□□ -0.8
PTPRF-206ENST00000429895 Q8N377 158 aa10.07□□□□□ -0.8
PTPRF-206ENST00000429895 EIF4EBP3O60516 100 aaPredicted RBP10.07□□□□□ -0.8
PTPRF-206ENST00000429895 MIR22HGQ0VDD5 57 aa10.06□□□□□ -0.8
PTPRF-206ENST00000429895 RBM12B-AS1Q9P1G2 102 aa10.06□□□□□ -0.8
PTPRF-206ENST00000429895 A0A0D9SG42 100 aa10.05□□□□□ -0.8
PTPRF-206ENST00000429895 IGLV7-43P04211 117 aa10.05□□□□□ -0.8
PTPRF-206ENST00000429895 CASC10Q5T4H9 136 aa10.04□□□□□ -0.8
PTPRF-206ENST00000429895 PRR34Q9NV39 138 aa10.04□□□□□ -0.8
PTPRF-206ENST00000429895 PSORS1C2Q9UIG4 136 aa10.03□□□□□ -0.8
PTPRF-206ENST00000429895 PKD1L2Q7Z442 2459 aa10.03□□□□□ -0.8
PTPRF-206ENST00000429895 ANKRD11Q6UB99 2663 aaPredicted RBP10.02□□□□□ -0.81
PTPRF-206ENST00000429895 KLK9Q2XQG4 91 aa10.01□□□□□ -0.81
PTPRF-206ENST00000429895 C9orf163Q8N9P6 203 aa10.01□□□□□ -0.81
PTPRF-206ENST00000429895 GIG44P09565 113 aaPredicted RBP10.01□□□□□ -0.81
PTPRF-206ENST00000429895 Q8N1X5 172 aa10.01□□□□□ -0.81
PTPRF-206ENST00000429895 ERC2-IT1O76042 136 aa9.99□□□□□ -0.81
PTPRF-206ENST00000429895 PCSK5Q92824 1860 aa9.99□□□□□ -0.81
PTPRF-206ENST00000429895 PCNTO95613 3336 aa9.99□□□□□ -0.81
PTPRF-206ENST00000429895 CYP4F30PQ9H0H9 118 aa9.97□□□□□ -0.81
PTPRF-206ENST00000429895 IGLV5-48A0A075B6I7 105 aa9.97□□□□□ -0.81
PTPRF-206ENST00000429895 LINC00336Q6ZUF6 198 aa9.96□□□□□ -0.81
PTPRF-206ENST00000429895 BPTFQ12830 3046 aa9.96□□□□□ -0.82
PTPRF-206ENST00000429895 USP9YO00507 2555 aaPredicted RBP9.95□□□□□ -0.82
PTPRF-206ENST00000429895 SPRR4Q96PI1 79 aa9.95□□□□□ -0.82
PTPRF-206ENST00000429895 CEP295Q9C0D2 2601 aa9.94□□□□□ -0.82
PTPRF-206ENST00000429895 TLX1NBP0CAT3 122 aa9.94□□□□□ -0.82
PTPRF-206ENST00000429895 ANKRD17O75179 2603 aaKnown RBP9.94□□□□□ -0.82
PTPRF-206ENST00000429895 F8P00451 2351 aa9.93□□□□□ -0.82
PTPRF-206ENST00000429895 CHD8Q9HCK8 2581 aa9.93□□□□□ -0.82
PTPRF-206ENST00000429895 A0A096LNT2 108 aa9.93□□□□□ -0.82
PTPRF-206ENST00000429895 PLA2G2DQ9UNK4 145 aa9.93□□□□□ -0.82
PTPRF-206ENST00000429895 CENPFP49454 3210 aa9.92□□□□□ -0.82
PTPRF-206ENST00000429895 CEP350Q5VT06 3117 aa9.92□□□□□ -0.82
PTPRF-206ENST00000429895 MTORP42345 2549 aa9.91□□□□□ -0.82
PTPRF-206ENST00000429895 ZNF575Q86XF7 245 aa9.91□□□□□ -0.82
PTPRF-206ENST00000429895 SPTBN4Q9H254 2564 aa9.89□□□□□ -0.83
PTPRF-206ENST00000429895 LINC00612Q8N6U2 182 aa9.89□□□□□ -0.83
PTPRF-206ENST00000429895 FAM104AQ969W3 186 aa9.89□□□□□ -0.83
PTPRF-206ENST00000429895 POLQO75417 2590 aa9.88□□□□□ -0.83
PTPRF-206ENST00000429895 CDC42SE1Q9NRR8 79 aa9.86□□□□□ -0.83
PTPRF-206ENST00000429895 ACANP16112 2415 aa9.86□□□□□ -0.83
PTPRF-206ENST00000429895 Q6ZSA8 131 aa9.85□□□□□ -0.83
PTPRF-206ENST00000429895 CNBPP62633 177 aaKnown RBP9.85□□□□□ -0.83
PTPRF-206ENST00000429895 A0A1W2PNM2 257 aa9.85□□□□□ -0.83
PTPRF-206ENST00000429895 TNP2Q05952 138 aa9.84□□□□□ -0.83
PTPRF-206ENST00000429895 M0R2T5 61 aa9.84□□□□□ -0.83
PTPRF-206ENST00000429895 KLKP1Q107X0 134 aa9.83□□□□□ -0.84
PTPRF-206ENST00000429895 FASNP49327 2511 aaKnown RBP9.78□□□□□ -0.84
PTPRF-206ENST00000429895 IGLV7-46A0A075B6I9 117 aa9.78□□□□□ -0.84
PTPRF-206ENST00000429895 H7BZZ5 65 aa9.78□□□□□ -0.84
PTPRF-206ENST00000429895 PRR26Q8N8Z3 221 aa9.78□□□□□ -0.84
PTPRF-206ENST00000429895 KRTAP1-3Q8IUG1 177 aa9.78□□□□□ -0.84
PTPRF-206ENST00000429895 CAMK2N1Q7Z7J9 78 aa9.74□□□□□ -0.85
PTPRF-206ENST00000429895 KRTAP1-1Q07627 177 aa9.72□□□□□ -0.85
PTPRF-206ENST00000429895 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP9.72□□□□□ -0.85
PTPRF-206ENST00000429895 CD164Q04900 197 aa9.69□□□□□ -0.86
PTPRF-206ENST00000429895 KTN1-AS1Q86SY8 53 aa9.68□□□□□ -0.86
PTPRF-206ENST00000429895 SPANXA2-OT1Q8N9U9 137 aa9.68□□□□□ -0.86
PTPRF-206ENST00000429895 LUZP6Q538Z0 58 aa9.66□□□□□ -0.86
PTPRF-206ENST00000429895 LCA10Q71F78 164 aa9.65□□□□□ -0.86
PTPRF-206ENST00000429895 HTTP42858 3142 aa9.64□□□□□ -0.87
PTPRF-206ENST00000429895 C5orf42Q9H799 3197 aa9.61□□□□□ -0.87
PTPRF-206ENST00000429895 HRES1P13985 223 aa9.6□□□□□ -0.87
PTPRF-206ENST00000429895 A0A1B0GU33 70 aa9.59□□□□□ -0.87
PTPRF-206ENST00000429895 LINC00483Q53H64 154 aa9.59□□□□□ -0.87
PTPRF-206ENST00000429895 Q1T7F1 81 aa9.59□□□□□ -0.88
PTPRF-206ENST00000429895 S4R3F8 94 aa9.55□□□□□ -0.88
PTPRF-206ENST00000429895 CHD7Q9P2D1 2997 aa9.55□□□□□ -0.88
PTPRF-206ENST00000429895 OCR1Q9BZK8 76 aa9.54□□□□□ -0.88
PTPRF-206ENST00000429895 CR1P17927 2039 aa9.54□□□□□ -0.88
PTPRF-206ENST00000429895 ZCCHC13Q8WW36 166 aaKnown RBP9.52□□□□□ -0.89
PTPRF-206ENST00000429895 BRCA2P51587 3418 aa9.51□□□□□ -0.89
PTPRF-206ENST00000429895 CSAG1Q6PB30 78 aa9.5□□□□□ -0.89
PTPRF-206ENST00000429895 Q8N9P0 234 aaPredicted RBP9.49□□□□□ -0.89
PTPRF-206ENST00000429895 USP24Q9UPU5 2620 aa9.49□□□□□ -0.89
PTPRF-206ENST00000429895 FAM229BQ4G0N7 80 aa9.49□□□□□ -0.89
PTPRF-206ENST00000429895 PLAC8Q9NZF1 115 aa9.48□□□□□ -0.89
PTPRF-206ENST00000429895 MGAM2Q2M2H8 2515 aa9.47□□□□□ -0.89
PTPRF-206ENST00000429895 HECTD1Q9ULT8 2610 aa9.46□□□□□ -0.89
PTPRF-206ENST00000429895 MMP24-AS1A0A0U1RRL7 71 aa9.44□□□□□ -0.9
PTPRF-206ENST00000429895 Q5VSD8 79 aa9.42□□□□□ -0.9
PTPRF-206ENST00000429895 EPG5Q9HCE0 2579 aa9.41□□□□□ -0.9
PTPRF-206ENST00000429895 CHD9Q3L8U1 2897 aa9.41□□□□□ -0.9
PTPRF-206ENST00000429895 MKI67P46013 3256 aaKnown RBP9.4□□□□□ -0.91
PTPRF-206ENST00000429895 R4GN34 69 aa9.39□□□□□ -0.91
PTPRF-206ENST00000429895 DMAC1Q96GE9 116 aa9.39□□□□□ -0.91
PTPRF-206ENST00000429895 Q8NDZ9 215 aa9.39□□□□□ -0.91
PTPRF-206ENST00000429895 Q5W150 140 aa9.38□□□□□ -0.91
PTPRF-206ENST00000429895 SPINK7P58062 85 aa9.38□□□□□ -0.91
PTPRF-206ENST00000429895 Q75L30 129 aa9.36□□□□□ -0.91
PTPRF-206ENST00000429895 FLNBO75369 2602 aaKnown RBP9.35□□□□□ -0.91
PTPRF-206ENST00000429895 WIPF1O43516 503 aa9.35□□□□□ -0.91
PTPRF-206ENST00000429895 SEC61BP60468 96 aaKnown RBP9.35□□□□□ -0.91
PTPRF-206ENST00000429895 A0A0C4DFX4 3053 aa9.34□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 336.4 ms