RNA–Protein interactions for RNA: ENST00000427110.6

PTPRC-208, Transcript of protein tyrosine phosphatase, receptor type C, humanhuman

TSL 1 (best)

Gene PTPRC, Length 264 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRC-208ENST00000427110 ZFYVE26Q68DK2 2539 aa0.93□□□□□ -2.26
PTPRC-208ENST00000427110 CUBNO60494 3623 aa0.93□□□□□ -2.26
PTPRC-208ENST00000427110 ITPR2Q14571 2701 aa0.93□□□□□ -2.26
PTPRC-208ENST00000427110 SONP18583 2426 aaKnown RBP0.93□□□□□ -2.26
PTPRC-208ENST00000427110 TRBV6-4A0A1B0GX49 114 aa0.93□□□□□ -2.26
PTPRC-208ENST00000427110 SMIM9A6NGZ8 99 aa0.93□□□□□ -2.26
PTPRC-208ENST00000427110 F5H768 121 aa0.93□□□□□ -2.26
PTPRC-208ENST00000427110 K7ERJ3 54 aa0.93□□□□□ -2.26
PTPRC-208ENST00000427110 APOMO95445 188 aa0.93□□□□□ -2.26
PTPRC-208ENST00000427110 TCL1BO95988 128 aa0.93□□□□□ -2.26
PTPRC-208ENST00000427110 PRB1P04280 392 aa0.93□□□□□ -2.26
PTPRC-208ENST00000427110 LINC00694P0DN24 101 aa0.93□□□□□ -2.26
PTPRC-208ENST00000427110 XCL1P47992 114 aa0.93□□□□□ -2.26
PTPRC-208ENST00000427110 INSL3P51460 131 aa0.93□□□□□ -2.26
PTPRC-208ENST00000427110 TCTAP57738 103 aa0.93□□□□□ -2.26
PTPRC-208ENST00000427110 COTL1Q14019 142 aa0.93□□□□□ -2.26
PTPRC-208ENST00000427110 MIAQ16674 131 aa0.93□□□□□ -2.26
PTPRC-208ENST00000427110 DEFB136Q30KP8 78 aa0.93□□□□□ -2.26
PTPRC-208ENST00000427110 ETDBQ3ZM63 59 aa0.93□□□□□ -2.26
PTPRC-208ENST00000427110 DEFB121Q5J5C9 76 aa0.93□□□□□ -2.26
PTPRC-208ENST00000427110 TEN1Q86WV5 123 aa0.93□□□□□ -2.26
PTPRC-208ENST00000427110 MUSTN1Q8IVN3 82 aa0.93□□□□□ -2.26
PTPRC-208ENST00000427110 WFDC11Q8NEX6 87 aa0.93□□□□□ -2.26
PTPRC-208ENST00000427110 DYNLRB2Q8TF09 96 aa0.93□□□□□ -2.26
PTPRC-208ENST00000427110 ZNF418Q8TF45 676 aaPredicted RBP0.93□□□□□ -2.26
PTPRC-208ENST00000427110 PPDPFLQ8WWR9 84 aa0.93□□□□□ -2.26
PTPRC-208ENST00000427110 ZNF625Q96I27 306 aaPredicted RBP0.93□□□□□ -2.26
PTPRC-208ENST00000427110 CARD19Q96LW7 228 aa0.93□□□□□ -2.26
PTPRC-208ENST00000427110 SIGMAR1Q99720 223 aa0.93□□□□□ -2.26
PTPRC-208ENST00000427110 NAA38Q9BRA0 125 aaKnown RBP0.93□□□□□ -2.26
PTPRC-208ENST00000427110 CDC42SE2Q9NRR3 84 aa0.93□□□□□ -2.26
PTPRC-208ENST00000427110 CDKN2A-AS1Q9UH64 79 aa0.93□□□□□ -2.26
PTPRC-208ENST00000427110 NDUFA12Q9UI09 145 aa0.93□□□□□ -2.26
PTPRC-208ENST00000427110 ERG28Q9UKR5 140 aa0.93□□□□□ -2.26
PTPRC-208ENST00000427110 ACANP16112 2415 aa0.93□□□□□ -2.26
PTPRC-208ENST00000427110 DNAH3Q8TD57 4116 aa0.92□□□□□ -2.26
PTPRC-208ENST00000427110 JMJD1CQ15652 2540 aa0.92□□□□□ -2.26
PTPRC-208ENST00000427110 TENM4Q6N022 2769 aa0.92□□□□□ -2.26
PTPRC-208ENST00000427110 IGKV2D-29A0A075B6S2 120 aaPredicted RBP0.92□□□□□ -2.26
PTPRC-208ENST00000427110 TRGV1A0A0A0MS02 117 aa0.92□□□□□ -2.26
PTPRC-208ENST00000427110 TRBV6-8A0A0A6YYG3 113 aa0.92□□□□□ -2.26
PTPRC-208ENST00000427110 LOC107984156A0A0G2JMH3 177 aa0.92□□□□□ -2.26
PTPRC-208ENST00000427110 TRBV10-2A0A0K0K1G8 114 aa0.92□□□□□ -2.26
PTPRC-208ENST00000427110 IGKV2-29A2NJV5 120 aaPredicted RBP0.92□□□□□ -2.26
PTPRC-208ENST00000427110 TMEM262E9PQX1 116 aa0.92□□□□□ -2.26
PTPRC-208ENST00000427110 H3BT86 120 aa0.92□□□□□ -2.26
PTPRC-208ENST00000427110 LST1O00453 97 aa0.92□□□□□ -2.26
PTPRC-208ENST00000427110 PRM2P04554 102 aa0.92□□□□□ -2.26
PTPRC-208ENST00000427110 COX6CP09669 75 aa0.92□□□□□ -2.26
PTPRC-208ENST00000427110 RPL28P46779 137 aaKnown RBP0.92□□□□□ -2.26
PTPRC-208ENST00000427110 EMP1P54849 157 aa0.92□□□□□ -2.26
PTPRC-208ENST00000427110 COX6A2Q02221 97 aa0.92□□□□□ -2.26
PTPRC-208ENST00000427110 CIRBPQ14011 172 aaKnown RBP0.92□□□□□ -2.26
PTPRC-208ENST00000427110 ATXN8Q156A1 80 aa0.92□□□□□ -2.26
PTPRC-208ENST00000427110 KRTAP13-4Q3LI77 160 aa0.92□□□□□ -2.26
PTPRC-208ENST00000427110 Q6Q795 121 aa0.92□□□□□ -2.26
PTPRC-208ENST00000427110 SFTA2Q6UW10 78 aa0.92□□□□□ -2.26
PTPRC-208ENST00000427110 Q6ZTI0 123 aa0.92□□□□□ -2.26
PTPRC-208ENST00000427110 Q6ZUT4 128 aa0.92□□□□□ -2.26
PTPRC-208ENST00000427110 ARL17AQ8IVW1 177 aa0.92□□□□□ -2.26
PTPRC-208ENST00000427110 ANKRD29Q8N6D5 301 aa0.92□□□□□ -2.26
PTPRC-208ENST00000427110 LINC00308Q8TCZ7 52 aa0.92□□□□□ -2.26
PTPRC-208ENST00000427110 COPS9Q8WXC6 57 aa0.92□□□□□ -2.26
PTPRC-208ENST00000427110 KRTAP4-1Q9BYQ7 146 aa0.92□□□□□ -2.26
PTPRC-208ENST00000427110 FN1P02751 2386 aaKnown RBP0.92□□□□□ -2.26
PTPRC-208ENST00000427110 HELZ2Q9BYK8 2649 aaKnown RBP0.92□□□□□ -2.26
PTPRC-208ENST00000427110 BAHCC1Q9P281 2608 aa0.92□□□□□ -2.26
PTPRC-208ENST00000427110 CCDC168Q8NDH2 2452 aa0.92□□□□□ -2.26
PTPRC-208ENST00000427110 DNAH1Q9P2D7 4330 aa0.92□□□□□ -2.26
PTPRC-208ENST00000427110 MTORP42345 2549 aa0.91□□□□□ -2.26
PTPRC-208ENST00000427110 C2CD3Q4AC94 2353 aa0.91□□□□□ -2.26
PTPRC-208ENST00000427110 NSD1Q96L73 2696 aaPredicted RBP0.91□□□□□ -2.26
PTPRC-208ENST00000427110 IGHV3-64A0A075B6Q5 118 aa0.91□□□□□ -2.26
PTPRC-208ENST00000427110 TRAV13-2A0A0B4J235 113 aa0.91□□□□□ -2.26
PTPRC-208ENST00000427110 LINC00959A0A1B0GUT2 108 aa0.91□□□□□ -2.26
PTPRC-208ENST00000427110 A0A1B0GX51 115 aa0.91□□□□□ -2.26
PTPRC-208ENST00000427110 IBA57-AS1B1ANH7 110 aa0.91□□□□□ -2.26
PTPRC-208ENST00000427110 C9JAW5 83 aa0.91□□□□□ -2.26
PTPRC-208ENST00000427110 H0YGX0 51 aa0.91□□□□□ -2.26
PTPRC-208ENST00000427110 COX7A2LO14548 114 aa0.91□□□□□ -2.26
PTPRC-208ENST00000427110 TRACP01848 142 aa0.91□□□□□ -2.26
PTPRC-208ENST00000427110 ACYP1P07311 99 aa0.91□□□□□ -2.26
PTPRC-208ENST00000427110 SPINK8P0C7L1 97 aa0.91□□□□□ -2.26
PTPRC-208ENST00000427110 HTN1P15515 57 aa0.91□□□□□ -2.26
PTPRC-208ENST00000427110 TMEM258P61165 79 aa0.91□□□□□ -2.26
PTPRC-208ENST00000427110 MEIG1Q5JSS6 88 aa0.91□□□□□ -2.26
PTPRC-208ENST00000427110 C2orf82Q6UX34 121 aa0.91□□□□□ -2.26
PTPRC-208ENST00000427110 SOSTDC1Q6X4U4 206 aa0.91□□□□□ -2.26
PTPRC-208ENST00000427110 FAM19A5Q7Z5A7 132 aaPredicted RBP0.91□□□□□ -2.26
PTPRC-208ENST00000427110 Q8IZM0 81 aa0.91□□□□□ -2.26
PTPRC-208ENST00000427110 WFDC9Q8NEX5 89 aa0.91□□□□□ -2.26
PTPRC-208ENST00000427110 SMCR5Q8TEV8 140 aa0.91□□□□□ -2.26
PTPRC-208ENST00000427110 COX7B2Q8TF08 81 aa0.91□□□□□ -2.26
PTPRC-208ENST00000427110 DEFB104AQ8WTQ1 72 aa0.91□□□□□ -2.26
PTPRC-208ENST00000427110 NOP10Q9NPE3 64 aaKnown RBP0.91□□□□□ -2.26
PTPRC-208ENST00000427110 PRO0255Q9UI72 69 aa0.91□□□□□ -2.26
PTPRC-208ENST00000427110 TEP1Q99973 2627 aaKnown RBP0.91□□□□□ -2.26
PTPRC-208ENST00000427110 UNC79Q9P2D8 2635 aa0.91□□□□□ -2.26
PTPRC-208ENST00000427110 SETD2Q9BYW2 2564 aaPredicted RBP0.91□□□□□ -2.26
PTPRC-208ENST00000427110 DYNC2H1Q8NCM8 4307 aaKnown RBP0.91□□□□□ -2.26
Retrieved 100 of 20,778 RNA–protein pairs in 1318.2 ms