RNA–Protein interactions for RNA: ENST00000423463.6

VPS13A-208, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,702 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-208ENST00000423463 KRTAP5-4Q6L8H1 288 aa1.52□□□□□ -2.17
VPS13A-208ENST00000423463 HIST1H4GQ99525 98 aa1.52□□□□□ -2.17
VPS13A-208ENST00000423463 MAP1LC3CQ9BXW4 147 aa1.52□□□□□ -2.17
VPS13A-208ENST00000423463 PRO0461Q9UI25 63 aa1.52□□□□□ -2.17
VPS13A-208ENST00000423463 PLNP26678 52 aa1.52□□□□□ -2.17
VPS13A-208ENST00000423463 LCE3AQ5TA76 89 aa1.52□□□□□ -2.17
VPS13A-208ENST00000423463 PKD1P98161 4303 aa1.51□□□□□ -2.17
VPS13A-208ENST00000423463 HECTD4Q9Y4D8 3996 aa1.51□□□□□ -2.17
VPS13A-208ENST00000423463 LINC00587B1AMM8 73 aa1.51□□□□□ -2.17
VPS13A-208ENST00000423463 DPM2O94777 84 aa1.51□□□□□ -2.17
VPS13A-208ENST00000423463 COX17Q14061 63 aa1.51□□□□□ -2.17
VPS13A-208ENST00000423463 NKAPP1Q8N9T2 125 aa1.51□□□□□ -2.17
VPS13A-208ENST00000423463 PLEKHB2Q96CS7 222 aa1.51□□□□□ -2.17
VPS13A-208ENST00000423463 ZNF625Q96I27 306 aaPredicted RBP1.51□□□□□ -2.17
VPS13A-208ENST00000423463 TP73-AS1Q9UF72 201 aa1.51□□□□□ -2.17
VPS13A-208ENST00000423463 MYMXA0A1B0GTQ4 84 aa1.51□□□□□ -2.17
VPS13A-208ENST00000423463 H0Y8G0 127 aa1.51□□□□□ -2.17
VPS13A-208ENST00000423463 SYS1-DBNDD2H3BUS1 97 aa1.51□□□□□ -2.17
VPS13A-208ENST00000423463 LEPROTO15243 131 aa1.51□□□□□ -2.17
VPS13A-208ENST00000423463 OXTP01178 125 aa1.51□□□□□ -2.17
VPS13A-208ENST00000423463 IGKCP01834 107 aa1.51□□□□□ -2.17
VPS13A-208ENST00000423463 PFN2P35080 140 aa1.51□□□□□ -2.17
VPS13A-208ENST00000423463 SEC61GP60059 68 aa1.51□□□□□ -2.17
VPS13A-208ENST00000423463 HERVK_113P61574 105 aa1.51□□□□□ -2.17
VPS13A-208ENST00000423463 PRR3P79522 188 aaKnown RBP1.51□□□□□ -2.17
VPS13A-208ENST00000423463 LINC01545Q5VT33 79 aa1.51□□□□□ -2.17
VPS13A-208ENST00000423463 PHF5AQ7RTV0 110 aaKnown RBP1.51□□□□□ -2.17
VPS13A-208ENST00000423463 FAM19A5Q7Z5A7 132 aaPredicted RBP1.51□□□□□ -2.17
VPS13A-208ENST00000423463 XAGE1AQ9HD64 81 aa1.51□□□□□ -2.17
VPS13A-208ENST00000423463 ERG28Q9UKR5 140 aa1.51□□□□□ -2.17
VPS13A-208ENST00000423463 MACF1Q9UPN3 7388 aaKnown RBP1.5□□□□□ -2.17
VPS13A-208ENST00000423463 H0Y9J4 135 aa1.5□□□□□ -2.17
VPS13A-208ENST00000423463 M0QXV9 152 aa1.5□□□□□ -2.17
VPS13A-208ENST00000423463 S100A6P06703 90 aa1.5□□□□□ -2.17
VPS13A-208ENST00000423463 NMUP48645 174 aa1.5□□□□□ -2.17
VPS13A-208ENST00000423463 AKR1D1P51857 326 aa1.5□□□□□ -2.17
VPS13A-208ENST00000423463 LINC00158P58513 81 aa1.5□□□□□ -2.17
VPS13A-208ENST00000423463 SPINK6Q6UWN8 80 aa1.5□□□□□ -2.17
VPS13A-208ENST00000423463 NDUFA12Q9UI09 145 aa1.5□□□□□ -2.17
VPS13A-208ENST00000423463 C22orf24Q9Y442 160 aa1.5□□□□□ -2.17
VPS13A-208ENST00000423463 MUC5ACP98088 5654 aa1.5□□□□□ -2.17
VPS13A-208ENST00000423463 A0A0J9YXY3 114 aa1.5□□□□□ -2.17
VPS13A-208ENST00000423463 C20orf202A1L168 122 aa1.5□□□□□ -2.17
VPS13A-208ENST00000423463 J3QQQ9 107 aa1.5□□□□□ -2.17
VPS13A-208ENST00000423463 C3orf79P0CE67 100 aa1.5□□□□□ -2.17
VPS13A-208ENST00000423463 LGALS3P17931 250 aaKnown RBP1.5□□□□□ -2.17
VPS13A-208ENST00000423463 UBE2BP63146 152 aa1.5□□□□□ -2.17
VPS13A-208ENST00000423463 PMCHL2Q9BQD1 86 aa1.5□□□□□ -2.17
VPS13A-208ENST00000423463 SND1-IT1Q9HBX3 110 aa1.5□□□□□ -2.17
VPS13A-208ENST00000423463 PSORS1C2Q9UIG4 136 aa1.5□□□□□ -2.17
VPS13A-208ENST00000423463 LRP1BQ9NZR2 4599 aa1.5□□□□□ -2.17
VPS13A-208ENST00000423463 LOC107984156A0A0G2JMH3 177 aa1.49□□□□□ -2.17
VPS13A-208ENST00000423463 IGLV7-43P04211 117 aa1.49□□□□□ -2.17
VPS13A-208ENST00000423463 SMIM13P0DJ93 91 aa1.49□□□□□ -2.17
VPS13A-208ENST00000423463 KRTDAPP60985 99 aa1.49□□□□□ -2.17
VPS13A-208ENST00000423463 MEIG1Q5JSS6 88 aa1.49□□□□□ -2.17
VPS13A-208ENST00000423463 C1orf137Q5JT78 98 aa1.49□□□□□ -2.17
VPS13A-208ENST00000423463 MRPL55Q7Z7F7 128 aaKnown RBP1.49□□□□□ -2.17
VPS13A-208ENST00000423463 ARL17AQ8IVW1 177 aa1.49□□□□□ -2.17
VPS13A-208ENST00000423463 PKHD1P08F94 4074 aa1.49□□□□□ -2.17
VPS13A-208ENST00000423463 DNAH5Q8TE73 4624 aa1.49□□□□□ -2.17
VPS13A-208ENST00000423463 S100A2P29034 98 aa1.49□□□□□ -2.17
VPS13A-208ENST00000423463 HIST3H2BBQ8N257 126 aa1.49□□□□□ -2.17
VPS13A-208ENST00000423463 DIRC1Q969H9 104 aa1.49□□□□□ -2.17
VPS13A-208ENST00000423463 KRTAP4-16G5E9R7 235 aaPredicted RBP1.48□□□□□ -2.17
VPS13A-208ENST00000423463 M0R378 163 aa1.48□□□□□ -2.17
VPS13A-208ENST00000423463 TSPEAR-AS2P59090 65 aa1.48□□□□□ -2.17
VPS13A-208ENST00000423463 KRTAP13-3Q3SY46 172 aa1.48□□□□□ -2.17
VPS13A-208ENST00000423463 MIR7-3HGQ8N6C7 128 aa1.48□□□□□ -2.17
VPS13A-208ENST00000423463 LINC01600Q96MT4 127 aa1.48□□□□□ -2.17
VPS13A-208ENST00000423463 FLG2Q5D862 2391 aaPredicted RBP1.48□□□□□ -2.17
VPS13A-208ENST00000423463 IGLV1-50A0A075B6I6 118 aa1.48□□□□□ -2.17
VPS13A-208ENST00000423463 IGKV2D-26A0A0A0MRZ7 120 aa1.48□□□□□ -2.17
VPS13A-208ENST00000423463 ZNF861PO60384 105 aa1.48□□□□□ -2.17
VPS13A-208ENST00000423463 BCE1O60756 84 aa1.48□□□□□ -2.17
VPS13A-208ENST00000423463 TIMM17BO60830 172 aa1.48□□□□□ -2.17
VPS13A-208ENST00000423463 KRTAP2-3P0C7H8 128 aa1.48□□□□□ -2.17
VPS13A-208ENST00000423463 RPL28P46779 137 aaKnown RBP1.48□□□□□ -2.17
VPS13A-208ENST00000423463 BOD1L2Q8IYS8 172 aa1.48□□□□□ -2.17
VPS13A-208ENST00000423463 HIST1H2BLQ99880 126 aa1.48□□□□□ -2.17
VPS13A-208ENST00000423463 KRTAP2-4Q9BYR9 128 aa1.48□□□□□ -2.17
VPS13A-208ENST00000423463 APOBP04114 4563 aaKnown RBP1.48□□□□□ -2.17
VPS13A-208ENST00000423463 HSPG2P98160 4391 aa1.48□□□□□ -2.17
VPS13A-208ENST00000423463 TRBV10-2A0A0K0K1G8 114 aa1.47□□□□□ -2.17
VPS13A-208ENST00000423463 ZNF815PA8K554 130 aa1.47□□□□□ -2.17
VPS13A-208ENST00000423463 NDUFC2O95298 119 aa1.47□□□□□ -2.17
VPS13A-208ENST00000423463 KRTAP10-8P60410 259 aa1.47□□□□□ -2.17
VPS13A-208ENST00000423463 MIEN1Q9BRT3 115 aa1.47□□□□□ -2.17
VPS13A-208ENST00000423463 SPRR5A0A1B0GTR4 108 aa1.47□□□□□ -2.17
VPS13A-208ENST00000423463 HSBP1L1C9JCN9 74 aa1.47□□□□□ -2.17
VPS13A-208ENST00000423463 MT1HL1P0DM35 61 aa1.47□□□□□ -2.17
VPS13A-208ENST00000423463 UBE2AP49459 152 aa1.47□□□□□ -2.17
VPS13A-208ENST00000423463 S100A12P80511 92 aa1.47□□□□□ -2.17
VPS13A-208ENST00000423463 Q8NDZ9 215 aa1.47□□□□□ -2.17
VPS13A-208ENST00000423463 TMEM126AQ9H061 195 aa1.47□□□□□ -2.17
VPS13A-208ENST00000423463 KCNQ1DNQ9H478 68 aa1.47□□□□□ -2.17
VPS13A-208ENST00000423463 DNAH8Q96JB1 4490 aa1.47□□□□□ -2.17
VPS13A-208ENST00000423463 IGKV2-28A0A075B6P5 120 aa1.46□□□□□ -2.17
VPS13A-208ENST00000423463 TMEM238C9JI98 176 aa1.46□□□□□ -2.17
VPS13A-208ENST00000423463 IGKV2D-28P01615 120 aa1.46□□□□□ -2.17
Retrieved 100 of 20,778 RNA–protein pairs in 89.3 ms