RNA–Protein interactions for RNA: ENST00000418501.5

USP54-203, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,370 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-203ENST00000418501 FAM218AQ96MZ4 157 aa5.45□□□□□ -1.54
USP54-203ENST00000418501 IGLV1-50A0A075B6I6 118 aa5.45□□□□□ -1.54
USP54-203ENST00000418501 FAM19A1Q7Z5A9 133 aa5.45□□□□□ -1.54
USP54-203ENST00000418501 ZNF706Q9Y5V0 76 aaPredicted RBP5.45□□□□□ -1.54
USP54-203ENST00000418501 A0A087WTM6 91 aa5.45□□□□□ -1.54
USP54-203ENST00000418501 LINC00643Q86TS7 51 aa5.44□□□□□ -1.54
USP54-203ENST00000418501 TRBV7-7A0A0K0K1E9 115 aa5.44□□□□□ -1.54
USP54-203ENST00000418501 FUSP35637 526 aaKnown RBP eCLIP5.44□□□□□ -1.54
USP54-203ENST00000418501 SLPIP03973 132 aa5.44□□□□□ -1.54
USP54-203ENST00000418501 CASC10Q5T4H9 136 aa5.44□□□□□ -1.54
USP54-203ENST00000418501 ATP5EP2Q5VTU8 51 aa5.44□□□□□ -1.54
USP54-203ENST00000418501 A0A1B0GW54 56 aa5.44□□□□□ -1.54
USP54-203ENST00000418501 C5orf47Q569G3 176 aa5.44□□□□□ -1.54
USP54-203ENST00000418501 Q6ZRX8 168 aa5.44□□□□□ -1.54
USP54-203ENST00000418501 RPL37AP8A6NKH3 93 aa5.43□□□□□ -1.54
USP54-203ENST00000418501 NOTCH1P46531 2555 aa5.43□□□□□ -1.54
USP54-203ENST00000418501 LINC00528Q8N1L1 170 aa5.43□□□□□ -1.54
USP54-203ENST00000418501 LINC00476Q8WZB0 136 aa5.43□□□□□ -1.54
USP54-203ENST00000418501 CCKP06307 115 aa5.43□□□□□ -1.54
USP54-203ENST00000418501 C14orf132Q9NPU4 83 aa5.43□□□□□ -1.54
USP54-203ENST00000418501 A0A096LNI7 61 aa5.42□□□□□ -1.54
USP54-203ENST00000418501 RTL8CO15255 209 aa5.42□□□□□ -1.54
USP54-203ENST00000418501 NBEAL2Q6ZNJ1 2754 aa5.42□□□□□ -1.54
USP54-203ENST00000418501 SERTAD4-AS1Q5TG53 156 aa5.42□□□□□ -1.54
USP54-203ENST00000418501 CMYA5Q8N3K9 4069 aa5.42□□□□□ -1.54
USP54-203ENST00000418501 KRTAP1-5Q9BYS1 174 aa5.41□□□□□ -1.54
USP54-203ENST00000418501 LYSTQ99698 3801 aa5.41□□□□□ -1.54
USP54-203ENST00000418501 IMUPQ9GZP8 106 aa5.41□□□□□ -1.54
USP54-203ENST00000418501 DEFB105AQ8NG35 78 aa5.41□□□□□ -1.54
USP54-203ENST00000418501 Q6ZR54 194 aa5.41□□□□□ -1.54
USP54-203ENST00000418501 LOC110117498A0A087WWA1 95 aa5.4□□□□□ -1.54
USP54-203ENST00000418501 LRCOL1A6NCL2 159 aa5.4□□□□□ -1.54
USP54-203ENST00000418501 SDIM1Q6ZPB5 146 aa5.39□□□□□ -1.55
USP54-203ENST00000418501 H0Y9J4 135 aa5.39□□□□□ -1.55
USP54-203ENST00000418501 HIGD2AQ9BW72 106 aa5.39□□□□□ -1.55
USP54-203ENST00000418501 Q6JHZ5 121 aa5.38□□□□□ -1.55
USP54-203ENST00000418501 SPRR1AP35321 89 aa5.38□□□□□ -1.55
USP54-203ENST00000418501 LINC00336Q6ZUF6 198 aa5.38□□□□□ -1.55
USP54-203ENST00000418501 OBSCN-AS1Q96MR7 158 aa5.38□□□□□ -1.55
USP54-203ENST00000418501 RPS28P62857 69 aaKnown RBP5.37□□□□□ -1.55
USP54-203ENST00000418501 FBN1P35555 2871 aaKnown RBP5.37□□□□□ -1.55
USP54-203ENST00000418501 VWFP04275 2813 aa5.37□□□□□ -1.55
USP54-203ENST00000418501 BCE1O60756 84 aa5.37□□□□□ -1.55
USP54-203ENST00000418501 Q6ZRN7 208 aaPredicted RBP5.37□□□□□ -1.55
USP54-203ENST00000418501 C3orf22Q8N5N4 141 aa5.37□□□□□ -1.55
USP54-203ENST00000418501 FAM168BA1KXE4 195 aa5.36□□□□□ -1.55
USP54-203ENST00000418501 Q8NDZ9 215 aa5.36□□□□□ -1.55
USP54-203ENST00000418501 NREPQ16612 68 aa5.35□□□□□ -1.55
USP54-203ENST00000418501 SMCR5Q8TEV8 140 aa5.35□□□□□ -1.55
USP54-203ENST00000418501 UQCRQO14949 82 aa5.34□□□□□ -1.55
USP54-203ENST00000418501 HIST1H4AP62805 103 aaKnown RBP5.34□□□□□ -1.55
USP54-203ENST00000418501 TRRAPQ9Y4A5 3859 aa5.34□□□□□ -1.55
USP54-203ENST00000418501 J3KT08 172 aa5.34□□□□□ -1.55
USP54-203ENST00000418501 PHF5AQ7RTV0 110 aaKnown RBP5.34□□□□□ -1.55
USP54-203ENST00000418501 SPACA4Q8TDM5 124 aa5.34□□□□□ -1.55
USP54-203ENST00000418501 A0A1W2PNN7 141 aa5.34□□□□□ -1.56
USP54-203ENST00000418501 Q6ZQT0 140 aa5.33□□□□□ -1.56
USP54-203ENST00000418501 DNAH1Q9P2D7 4330 aa5.33□□□□□ -1.56
USP54-203ENST00000418501 CRYGAP11844 174 aa5.33□□□□□ -1.56
USP54-203ENST00000418501 HAMPP81172 84 aa5.33□□□□□ -1.56
USP54-203ENST00000418501 FAM236AA0A1B0GUQ0 79 aa5.33□□□□□ -1.56
USP54-203ENST00000418501 FAM236BA0A1B0GV22 79 aa5.33□□□□□ -1.56
USP54-203ENST00000418501 C1orf137Q5JT78 98 aa5.33□□□□□ -1.56
USP54-203ENST00000418501 CHTF8P0CG12 524 aa5.32□□□□□ -1.56
USP54-203ENST00000418501 IGLV5-48A0A075B6I7 105 aa5.32□□□□□ -1.56
USP54-203ENST00000418501 DNAH3Q8TD57 4116 aa5.32□□□□□ -1.56
USP54-203ENST00000418501 OXTP01178 125 aa5.32□□□□□ -1.56
USP54-203ENST00000418501 CYSTM1Q9H1C7 97 aa5.32□□□□□ -1.56
USP54-203ENST00000418501 RPL37AP61513 92 aaKnown RBP5.32□□□□□ -1.56
USP54-203ENST00000418501 PLAC8Q9NZF1 115 aa5.32□□□□□ -1.56
USP54-203ENST00000418501 EPM2AB3EWF7 344 aa5.31□□□□□ -1.56
USP54-203ENST00000418501 C9orf153Q5TBE3 101 aa5.31□□□□□ -1.56
USP54-203ENST00000418501 PRLHP81277 87 aa5.31□□□□□ -1.56
USP54-203ENST00000418501 TRBV7-4A0A0J9YYF1 115 aa5.3□□□□□ -1.56
USP54-203ENST00000418501 Q9BRP9 147 aa5.3□□□□□ -1.56
USP54-203ENST00000418501 COX7CP15954 63 aa5.3□□□□□ -1.56
USP54-203ENST00000418501 Q5XG85 94 aa5.3□□□□□ -1.56
USP54-203ENST00000418501 ATOX1O00244 68 aa5.3□□□□□ -1.56
USP54-203ENST00000418501 KRTAP4-16G5E9R7 235 aaPredicted RBP5.29□□□□□ -1.56
USP54-203ENST00000418501 CXCL6P80162 114 aa5.29□□□□□ -1.56
USP54-203ENST00000418501 NBEAL1Q6ZS30 2694 aa5.29□□□□□ -1.56
USP54-203ENST00000418501 Q8N377 158 aa5.29□□□□□ -1.56
USP54-203ENST00000418501 BPY2O14599 106 aa5.28□□□□□ -1.56
USP54-203ENST00000418501 LINC00846Q9NV44 126 aa5.28□□□□□ -1.56
USP54-203ENST00000418501 CDK2AP2O75956 126 aa5.28□□□□□ -1.56
USP54-203ENST00000418501 TNP2Q05952 138 aa5.28□□□□□ -1.56
USP54-203ENST00000418501 Q8NBF4 154 aa5.28□□□□□ -1.56
USP54-203ENST00000418501 LCE6AA0A183 80 aa5.27□□□□□ -1.57
USP54-203ENST00000418501 IGKV3D-7A0A0C4DH55 119 aa5.27□□□□□ -1.57
USP54-203ENST00000418501 ZNF861PO60384 105 aa5.27□□□□□ -1.57
USP54-203ENST00000418501 SPRR1BP22528 89 aa5.27□□□□□ -1.57
USP54-203ENST00000418501 TENM3Q9P273 2699 aa5.26□□□□□ -1.57
USP54-203ENST00000418501 NDUFB1O75438 58 aa5.26□□□□□ -1.57
USP54-203ENST00000418501 Q6ZVQ6 151 aa5.26□□□□□ -1.57
USP54-203ENST00000418501 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP5.25□□□□□ -1.57
USP54-203ENST00000418501 ST20-AS1Q8NBB2 130 aa5.25□□□□□ -1.57
USP54-203ENST00000418501 STAB2Q8WWQ8 2551 aa5.25□□□□□ -1.57
USP54-203ENST00000418501 TMEM258P61165 79 aa5.25□□□□□ -1.57
USP54-203ENST00000418501 C4orf26Q17RF5 130 aa5.24□□□□□ -1.57
USP54-203ENST00000418501 IGLV8-61A0A075B6I0 122 aa5.24□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms