RNA–Protein interactions for RNA: ENST00000409958.6

VSX1-204, Transcript of visual system homeobox 1, humanhuman

TSL 1 (best)

Gene VSX1, Length 1,305 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1-204ENST00000409958 TYMSOSQ8TAI1 123 aa12.25□□□□□ -0.45
VSX1-204ENST00000409958 TRAV23DV6A0A075B6W5 121 aa12.24□□□□□ -0.45
VSX1-204ENST00000409958 HSBP1L1C9JCN9 74 aa12.24□□□□□ -0.45
VSX1-204ENST00000409958 CBY1Q9Y3M2 126 aa12.24□□□□□ -0.45
VSX1-204ENST00000409958 KRTAP13-2Q52LG2 175 aa12.23□□□□□ -0.45
VSX1-204ENST00000409958 Q6ZVH6 145 aa12.23□□□□□ -0.45
VSX1-204ENST00000409958 COPS9Q8WXC6 57 aa12.23□□□□□ -0.45
VSX1-204ENST00000409958 ZNF706Q9Y5V0 76 aaPredicted RBP12.23□□□□□ -0.45
VSX1-204ENST00000409958 IFITM1P13164 125 aa12.22□□□□□ -0.45
VSX1-204ENST00000409958 SMCR5Q8TEV8 140 aa12.22□□□□□ -0.45
VSX1-204ENST00000409958 SPRR4Q96PI1 79 aa12.22□□□□□ -0.45
VSX1-204ENST00000409958 PPDPFQ9H3Y8 114 aa12.22□□□□□ -0.45
VSX1-204ENST00000409958 LINC00518Q8N0U6 118 aa12.21□□□□□ -0.45
VSX1-204ENST00000409958 ZNF73O43830 326 aaPredicted RBP12.2□□□□□ -0.46
VSX1-204ENST00000409958 Q6ZRX8 168 aa12.2□□□□□ -0.46
VSX1-204ENST00000409958 SCGB1D1O95968 90 aa12.19□□□□□ -0.46
VSX1-204ENST00000409958 OR13C6PQ8NH95 151 aa12.19□□□□□ -0.46
VSX1-204ENST00000409958 Q9BRP9 147 aa12.17□□□□□ -0.46
VSX1-204ENST00000409958 JOSD1Q15040 202 aaPredicted RBP12.16□□□□□ -0.46
VSX1-204ENST00000409958 HINT1P49773 126 aaPredicted RBP12.15□□□□□ -0.46
VSX1-204ENST00000409958 MUSTN1Q8IVN3 82 aa12.15□□□□□ -0.46
VSX1-204ENST00000409958 ERC2-IT1O76042 136 aa12.14□□□□□ -0.47
VSX1-204ENST00000409958 LRP2P98164 4655 aa12.14□□□□□ -0.47
VSX1-204ENST00000409958 UBR4Q5T4S7 5183 aa12.13□□□□□ -0.47
VSX1-204ENST00000409958 LINC00483Q53H64 154 aa12.12□□□□□ -0.47
VSX1-204ENST00000409958 C3orf22Q8N5N4 141 aa12.12□□□□□ -0.47
VSX1-204ENST00000409958 TSPAN13O95857 204 aa12.11□□□□□ -0.47
VSX1-204ENST00000409958 LINC00304Q8N9R0 145 aa12.11□□□□□ -0.47
VSX1-204ENST00000409958 GAGE2AQ6NT46 116 aa12.1□□□□□ -0.47
VSX1-204ENST00000409958 A6NDN8 102 aa12.07□□□□□ -0.48
VSX1-204ENST00000409958 COX8AP10176 69 aa12.07□□□□□ -0.48
VSX1-204ENST00000409958 C6orf99Q4VX62 202 aa12.07□□□□□ -0.48
VSX1-204ENST00000409958 CTAG1AP78358 180 aa12.06□□□□□ -0.48
VSX1-204ENST00000409958 TRAV13-2A0A0B4J235 113 aa12.05□□□□□ -0.48
VSX1-204ENST00000409958 ELOF1P60002 83 aaKnown RBP12.05□□□□□ -0.48
VSX1-204ENST00000409958 DHRS4-AS1Q9P1J3 65 aa12.05□□□□□ -0.48
VSX1-204ENST00000409958 DLEU1O43261 78 aa12.04□□□□□ -0.48
VSX1-204ENST00000409958 COX7BP24311 80 aa12.04□□□□□ -0.48
VSX1-204ENST00000409958 TRBV7-6A0A0J9YX20 115 aa12.03□□□□□ -0.48
VSX1-204ENST00000409958 PRR4Q16378 134 aa12.02□□□□□ -0.49
VSX1-204ENST00000409958 SPAG11AQ6PDA7 123 aa12.02□□□□□ -0.49
VSX1-204ENST00000409958 ST20-AS1Q8NBB2 130 aa12.01□□□□□ -0.49
VSX1-204ENST00000409958 SPATA45Q537H7 98 aa12□□□□□ -0.49
VSX1-204ENST00000409958 PAM16Q9Y3D7 125 aa12□□□□□ -0.49
VSX1-204ENST00000409958 A0A1B0GWB2 263 aa11.99□□□□□ -0.49
VSX1-204ENST00000409958 A4D1N5 150 aa11.99□□□□□ -0.49
VSX1-204ENST00000409958 Q8NBF4 154 aa11.99□□□□□ -0.49
VSX1-204ENST00000409958 VAMP8Q9BV40 100 aa11.99□□□□□ -0.49
VSX1-204ENST00000409958 HIST1H4GQ99525 98 aa11.98□□□□□ -0.49
VSX1-204ENST00000409958 IGLV9-49A0A0B4J1Y8 123 aa11.97□□□□□ -0.49
VSX1-204ENST00000409958 MOBPQ13875 183 aa11.97□□□□□ -0.49
VSX1-204ENST00000409958 C4orf48Q5BLP8 95 aa11.97□□□□□ -0.49
VSX1-204ENST00000409958 SSBP3-AS1Q7Z2R9 100 aa11.97□□□□□ -0.49
VSX1-204ENST00000409958 SMIM11BQ8TCY0 68 aa11.97□□□□□ -0.49
VSX1-204ENST00000409958 C14orf144Q96I85 54 aa11.97□□□□□ -0.49
VSX1-204ENST00000409958 LPAP08519 4548 aa11.97□□□□□ -0.49
VSX1-204ENST00000409958 SPRR1BP22528 89 aa11.95□□□□□ -0.5
VSX1-204ENST00000409958 SLC25A34Q6PIV7 304 aa11.93□□□□□ -0.5
VSX1-204ENST00000409958 HIGD1BQ9P298 99 aa11.93□□□□□ -0.5
VSX1-204ENST00000409958 TMA7Q9Y2S6 64 aaKnown RBP11.93□□□□□ -0.5
VSX1-204ENST00000409958 RETNLBQ9BQ08 111 aa11.91□□□□□ -0.5
VSX1-204ENST00000409958 SPINK1P00995 79 aa11.9□□□□□ -0.5
VSX1-204ENST00000409958 PYY3Q5JQD4 70 aa11.9□□□□□ -0.5
VSX1-204ENST00000409958 C9orf153Q5TBE3 101 aa11.9□□□□□ -0.5
VSX1-204ENST00000409958 VAMP3Q15836 100 aa11.88□□□□□ -0.51
VSX1-204ENST00000409958 TAL2Q16559 108 aa11.88□□□□□ -0.51
VSX1-204ENST00000409958 NHP2Q9NX24 153 aaKnown RBP11.88□□□□□ -0.51
VSX1-204ENST00000409958 C2orf91Q6ZV80 131 aa11.87□□□□□ -0.51
VSX1-204ENST00000409958 C12orf57Q99622 126 aa11.87□□□□□ -0.51
VSX1-204ENST00000409958 LAMTOR3Q9UHA4 124 aa11.87□□□□□ -0.51
VSX1-204ENST00000409958 TEX49A0A1B0GTD5 131 aa11.86□□□□□ -0.51
VSX1-204ENST00000409958 DEFB105AQ8NG35 78 aa11.86□□□□□ -0.51
VSX1-204ENST00000409958 RPS29P62273 56 aaKnown RBP11.85□□□□□ -0.51
VSX1-204ENST00000409958 IGLV5-48A0A075B6I7 105 aa11.84□□□□□ -0.51
VSX1-204ENST00000409958 SLC25A20O43772 301 aa11.84□□□□□ -0.51
VSX1-204ENST00000409958 LINC01547P58512 204 aaPredicted RBP11.83□□□□□ -0.52
VSX1-204ENST00000409958 CFC1BP0CG36 223 aa11.82□□□□□ -0.52
VSX1-204ENST00000409958 CFC1P0CG37 223 aa11.82□□□□□ -0.52
VSX1-204ENST00000409958 LINC00575Q6W349 94 aa11.82□□□□□ -0.52
VSX1-204ENST00000409958 IGLV7-46A0A075B6I9 117 aa11.81□□□□□ -0.52
VSX1-204ENST00000409958 Q1RN00 199 aa11.81□□□□□ -0.52
VSX1-204ENST00000409958 A0A0B4J2C4 111 aa11.8□□□□□ -0.52
VSX1-204ENST00000409958 FP248Q71RG6 208 aaPredicted RBP11.8□□□□□ -0.52
VSX1-204ENST00000409958 SMIM29Q86T20 159 aa11.8□□□□□ -0.52
VSX1-204ENST00000409958 CEND1Q8N111 149 aa11.8□□□□□ -0.52
VSX1-204ENST00000409958 RAB37Q96AX2 223 aa11.8□□□□□ -0.52
VSX1-204ENST00000409958 BVES-AS1Q5T3Y7 98 aa11.79□□□□□ -0.52
VSX1-204ENST00000409958 RNF213Q63HN8 5207 aa11.79□□□□□ -0.52
VSX1-204ENST00000409958 hADV29S1A0JD25 119 aa11.77□□□□□ -0.53
VSX1-204ENST00000409958 TPRXLQ17RH7 258 aa11.77□□□□□ -0.53
VSX1-204ENST00000409958 Q8N377 158 aa11.77□□□□□ -0.53
VSX1-204ENST00000409958 TMEM238LA0A1B0GVL6 79 aa11.76□□□□□ -0.53
VSX1-204ENST00000409958 A6NJY4 79 aa11.76□□□□□ -0.53
VSX1-204ENST00000409958 H7C2G1 150 aa11.75□□□□□ -0.53
VSX1-204ENST00000409958 PRO1933Q9H354 126 aa11.74□□□□□ -0.53
VSX1-204ENST00000409958 Q6ZQY7 126 aa11.73□□□□□ -0.53
VSX1-204ENST00000409958 FXYD2P54710 66 aa11.72□□□□□ -0.53
VSX1-204ENST00000409958 CD164Q04900 197 aa11.7□□□□□ -0.54
VSX1-204ENST00000409958 HSD52Q0P140 79 aa11.7□□□□□ -0.54
VSX1-204ENST00000409958 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP11.7□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 53.7 ms