RNA–Protein interactions for RNA: ENST00000400301.5

USP48-204, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 4,309 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-204ENST00000400301 APCP25054 2843 aa12.35□□□□□ -0.43
USP48-204ENST00000400301 LINC00588Q9Y4M8 146 aa12.35□□□□□ -0.43
USP48-204ENST00000400301 SMG1Q96Q15 3661 aaKnown RBP12.35□□□□□ -0.43
USP48-204ENST00000400301 PRLHP81277 87 aa12.34□□□□□ -0.43
USP48-204ENST00000400301 NF1P21359 2839 aa12.33□□□□□ -0.44
USP48-204ENST00000400301 C15orf56Q8N910 161 aa12.32□□□□□ -0.44
USP48-204ENST00000400301 DNAH10OSP0CZ25 163 aa12.31□□□□□ -0.44
USP48-204ENST00000400301 MPLKIPQ8TAP9 179 aa12.29□□□□□ -0.44
USP48-204ENST00000400301 FBN2P35556 2912 aa12.29□□□□□ -0.44
USP48-204ENST00000400301 A0A087WSZ3 146 aa12.28□□□□□ -0.44
USP48-204ENST00000400301 Q6ZRX8 168 aa12.28□□□□□ -0.44
USP48-204ENST00000400301 SERTAD4-AS1Q5TG53 156 aa12.28□□□□□ -0.44
USP48-204ENST00000400301 COL6A5A8TX70 2615 aa12.28□□□□□ -0.44
USP48-204ENST00000400301 ATP5EP56381 51 aaPredicted RBP12.28□□□□□ -0.44
USP48-204ENST00000400301 LINC00528Q8N1L1 170 aa12.28□□□□□ -0.44
USP48-204ENST00000400301 TMEM254Q8TBM7 123 aa12.28□□□□□ -0.44
USP48-204ENST00000400301 DEFB116Q30KQ4 102 aa12.27□□□□□ -0.45
USP48-204ENST00000400301 Q9BRP9 147 aa12.27□□□□□ -0.45
USP48-204ENST00000400301 LINC00474Q9P2X8 69 aa12.27□□□□□ -0.45
USP48-204ENST00000400301 PRR4Q16378 134 aa12.26□□□□□ -0.45
USP48-204ENST00000400301 CELSR2Q9HCU4 2923 aa12.26□□□□□ -0.45
USP48-204ENST00000400301 ST20-AS1Q8NBB2 130 aa12.25□□□□□ -0.45
USP48-204ENST00000400301 IGLV9-49A0A0B4J1Y8 123 aa12.25□□□□□ -0.45
USP48-204ENST00000400301 FAM168BA1KXE4 195 aa12.25□□□□□ -0.45
USP48-204ENST00000400301 STAB1Q9NY15 2570 aa12.24□□□□□ -0.45
USP48-204ENST00000400301 OBSCN-AS1Q96MR7 158 aa12.24□□□□□ -0.45
USP48-204ENST00000400301 SERP1Q9Y6X1 66 aa12.24□□□□□ -0.45
USP48-204ENST00000400301 HRCT1Q6UXD1 115 aa12.23□□□□□ -0.45
USP48-204ENST00000400301 BCE1O60756 84 aa12.22□□□□□ -0.45
USP48-204ENST00000400301 C5orf47Q569G3 176 aa12.22□□□□□ -0.45
USP48-204ENST00000400301 MXRA5Q9NR99 2828 aa12.22□□□□□ -0.45
USP48-204ENST00000400301 NUPR2A6NF83 97 aa12.22□□□□□ -0.45
USP48-204ENST00000400301 KCNQ1DNQ9H478 68 aa12.21□□□□□ -0.45
USP48-204ENST00000400301 Q8NBF4 154 aa12.19□□□□□ -0.46
USP48-204ENST00000400301 SMIM26A0A096LP01 95 aa12.19□□□□□ -0.46
USP48-204ENST00000400301 BRK1Q8WUW1 75 aa12.18□□□□□ -0.46
USP48-204ENST00000400301 Q8NDZ9 215 aa12.18□□□□□ -0.46
USP48-204ENST00000400301 TM2D3Q9BRN9 247 aa12.18□□□□□ -0.46
USP48-204ENST00000400301 TRBV7-4A0A0J9YYF1 115 aa12.17□□□□□ -0.46
USP48-204ENST00000400301 SMIM29Q86T20 159 aa12.17□□□□□ -0.46
USP48-204ENST00000400301 CSMD1Q96PZ7 3565 aa12.16□□□□□ -0.46
USP48-204ENST00000400301 IGKV4-1P06312 121 aa12.16□□□□□ -0.46
USP48-204ENST00000400301 IGLV1-50A0A075B6I6 118 aa12.15□□□□□ -0.47
USP48-204ENST00000400301 LINC00476Q8WZB0 136 aa12.14□□□□□ -0.47
USP48-204ENST00000400301 LINC00208Q96KT6 92 aa12.14□□□□□ -0.47
USP48-204ENST00000400301 SPINK6Q6UWN8 80 aa12.14□□□□□ -0.47
USP48-204ENST00000400301 ZNF706Q9Y5V0 76 aaPredicted RBP12.14□□□□□ -0.47
USP48-204ENST00000400301 K7EIL1 84 aa12.14□□□□□ -0.47
USP48-204ENST00000400301 HCG22E2RYF7 251 aa12.13□□□□□ -0.47
USP48-204ENST00000400301 Q8N377 158 aa12.13□□□□□ -0.47
USP48-204ENST00000400301 RPS28P62857 69 aaKnown RBP12.12□□□□□ -0.47
USP48-204ENST00000400301 CASC10Q5T4H9 136 aa12.12□□□□□ -0.47
USP48-204ENST00000400301 A0A1B0GW54 56 aa12.12□□□□□ -0.47
USP48-204ENST00000400301 C16orf90A8MZG2 172 aa12.12□□□□□ -0.47
USP48-204ENST00000400301 PHF5AQ7RTV0 110 aaKnown RBP12.12□□□□□ -0.47
USP48-204ENST00000400301 LRCOL1A6NCL2 159 aa12.11□□□□□ -0.47
USP48-204ENST00000400301 CHTF8P0CG12 524 aa12.11□□□□□ -0.47
USP48-204ENST00000400301 WIPF1O43516 503 aa12.1□□□□□ -0.47
USP48-204ENST00000400301 CASC2Q6XLA1 102 aa12.1□□□□□ -0.47
USP48-204ENST00000400301 LY6G6CO95867 125 aa12.1□□□□□ -0.47
USP48-204ENST00000400301 MDFIQ99750 246 aa12.1□□□□□ -0.47
USP48-204ENST00000400301 TLX1NBP0CAT3 122 aa12.07□□□□□ -0.48
USP48-204ENST00000400301 CELSR1Q9NYQ6 3014 aa12.05□□□□□ -0.48
USP48-204ENST00000400301 NBEAL1Q6ZS30 2694 aa12.05□□□□□ -0.48
USP48-204ENST00000400301 NSD1Q96L73 2696 aaPredicted RBP12.05□□□□□ -0.48
USP48-204ENST00000400301 EPM2AB3EWF7 344 aa12.05□□□□□ -0.48
USP48-204ENST00000400301 C4orf48Q5BLP8 95 aa12.04□□□□□ -0.48
USP48-204ENST00000400301 HIVEP1P15822 2718 aa12.03□□□□□ -0.48
USP48-204ENST00000400301 PLA2G2DQ9UNK4 145 aa12.02□□□□□ -0.49
USP48-204ENST00000400301 NBDYA0A0U1RRE5 68 aa12.01□□□□□ -0.49
USP48-204ENST00000400301 IGLV5-52A0A0A0MRZ9 124 aa12.01□□□□□ -0.49
USP48-204ENST00000400301 NIPBLQ6KC79 2804 aaeCLIP12.01□□□□□ -0.493e-6■□□□□ 10.6
USP48-204ENST00000400301 SVEP1Q4LDE5 3571 aa12□□□□□ -0.49
USP48-204ENST00000400301 ERC2-IT1O76042 136 aa11.99□□□□□ -0.49
USP48-204ENST00000400301 H0Y9P7 68 aa11.99□□□□□ -0.49
USP48-204ENST00000400301 IGHV6-1A0A0B4J1U7 121 aa11.98□□□□□ -0.49
USP48-204ENST00000400301 CHKB-CPT1BH3BT56 60 aa11.98□□□□□ -0.49
USP48-204ENST00000400301 A0A0G2JQZ4 141 aa11.98□□□□□ -0.49
USP48-204ENST00000400301 A0A1W2PNN7 141 aa11.98□□□□□ -0.49
USP48-204ENST00000400301 K7EQZ3 153 aa11.97□□□□□ -0.49
USP48-204ENST00000400301 A0A0U1RQV1 116 aa11.97□□□□□ -0.49
USP48-204ENST00000400301 C4orf26Q17RF5 130 aa11.96□□□□□ -0.49
USP48-204ENST00000400301 KLKP1Q107X0 134 aa11.96□□□□□ -0.49
USP48-204ENST00000400301 A0A1W2PNM2 257 aa11.95□□□□□ -0.5
USP48-204ENST00000400301 RPL37AP61513 92 aaKnown RBP11.95□□□□□ -0.5
USP48-204ENST00000400301 CIRBP-AS1Q8TBR5 109 aa11.95□□□□□ -0.5
USP48-204ENST00000400301 C1orf134Q5TEV5 83 aa11.94□□□□□ -0.5
USP48-204ENST00000400301 IGFL1Q6UW32 110 aa11.94□□□□□ -0.5
USP48-204ENST00000400301 H7BZZ5 65 aa11.92□□□□□ -0.5
USP48-204ENST00000400301 IGLV5-48A0A075B6I7 105 aa11.91□□□□□ -0.5
USP48-204ENST00000400301 V9GYY9 64 aa11.91□□□□□ -0.5
USP48-204ENST00000400301 PCOTHQ58A44 107 aa11.9□□□□□ -0.5
USP48-204ENST00000400301 KRTAP26-1Q6PEX3 210 aa11.9□□□□□ -0.5
USP48-204ENST00000400301 IGLV5-37A0A075B6J1 123 aa11.88□□□□□ -0.51
USP48-204ENST00000400301 MOBPQ13875 183 aa11.88□□□□□ -0.51
USP48-204ENST00000400301 C1orf64Q8NEQ6 169 aa11.88□□□□□ -0.51
USP48-204ENST00000400301 hDV103S1A0JD37 113 aa11.87□□□□□ -0.51
USP48-204ENST00000400301 SVIPQ8NHG7 77 aa11.86□□□□□ -0.51
USP48-204ENST00000400301 C9orf163Q8N9P6 203 aa11.85□□□□□ -0.51
USP48-204ENST00000400301 SPENQ96T58 3664 aaKnown RBP11.85□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 101.5 ms