RNA–Protein interactions for RNA: ENST00000399429.7

COL28A1-201, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL28A1, Length 4,277 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-201ENST00000399429 OCR1Q9BZK8 76 aa6.28□□□□□ -1.4
COL28A1-201ENST00000399429 GCN1Q92616 2671 aaKnown RBP6.28□□□□□ -1.4
COL28A1-201ENST00000399429 IGHV4-30-4P0DP06 118 aa6.28□□□□□ -1.4
COL28A1-201ENST00000399429 IGLV2-33A0A075B6J2 118 aaPredicted RBP6.27□□□□□ -1.41
COL28A1-201ENST00000399429 KTN1-AS1Q86SY8 53 aa6.27□□□□□ -1.41
COL28A1-201ENST00000399429 CSMD1Q96PZ7 3565 aa6.26□□□□□ -1.41
COL28A1-201ENST00000399429 COL12A1Q99715 3063 aa6.26□□□□□ -1.41
COL28A1-201ENST00000399429 IGLV1-51P01701 117 aa6.25□□□□□ -1.41
COL28A1-201ENST00000399429 Q6ZRP5 223 aa6.25□□□□□ -1.41
COL28A1-201ENST00000399429 ST20-AS1Q8NBB2 130 aa6.25□□□□□ -1.41
COL28A1-201ENST00000399429 Q8NBF4 154 aa6.25□□□□□ -1.41
COL28A1-201ENST00000399429 Q6ZTC4 211 aa6.24□□□□□ -1.41
COL28A1-201ENST00000399429 Q1T7F1 81 aa6.24□□□□□ -1.41
COL28A1-201ENST00000399429 RPL37AP61513 92 aaKnown RBP6.24□□□□□ -1.41
COL28A1-201ENST00000399429 C7orf33Q8WU49 177 aa6.24□□□□□ -1.41
COL28A1-201ENST00000399429 MAST4O15021 2626 aa6.23□□□□□ -1.41
COL28A1-201ENST00000399429 VPREB1P12018 145 aa6.22□□□□□ -1.41
COL28A1-201ENST00000399429 MGAM2Q2M2H8 2515 aa6.22□□□□□ -1.41
COL28A1-201ENST00000399429 LINC00528Q8N1L1 170 aa6.22□□□□□ -1.41
COL28A1-201ENST00000399429 Q8NDZ9 215 aa6.22□□□□□ -1.41
COL28A1-201ENST00000399429 RBM12B-AS1Q9P1G2 102 aa6.22□□□□□ -1.41
COL28A1-201ENST00000399429 ATP11AUNQ6ZP68 121 aa6.21□□□□□ -1.42
COL28A1-201ENST00000399429 A0A0G2JQZ4 141 aa6.2□□□□□ -1.42
COL28A1-201ENST00000399429 A0A1W2PNN7 141 aa6.2□□□□□ -1.42
COL28A1-201ENST00000399429 Q8N377 158 aa6.19□□□□□ -1.42
COL28A1-201ENST00000399429 PRLHP81277 87 aa6.19□□□□□ -1.42
COL28A1-201ENST00000399429 C11orf45Q8TAV5 145 aa6.19□□□□□ -1.42
COL28A1-201ENST00000399429 SMG1Q96Q15 3661 aaKnown RBP6.19□□□□□ -1.42
COL28A1-201ENST00000399429 GIG44P09565 113 aaPredicted RBP6.19□□□□□ -1.42
COL28A1-201ENST00000399429 COA5Q86WW8 74 aa6.19□□□□□ -1.42
COL28A1-201ENST00000399429 CYP4F30PQ9H0H9 118 aa6.19□□□□□ -1.42
COL28A1-201ENST00000399429 UNC79Q9P2D8 2635 aa6.18□□□□□ -1.42
COL28A1-201ENST00000399429 LINC00476Q8WZB0 136 aa6.18□□□□□ -1.42
COL28A1-201ENST00000399429 Q9BRP9 147 aa6.18□□□□□ -1.42
COL28A1-201ENST00000399429 REG3GQ6UW15 175 aa6.18□□□□□ -1.42
COL28A1-201ENST00000399429 DEFB131BA0A096LNP1 70 aa6.17□□□□□ -1.42
COL28A1-201ENST00000399429 Q6ZRX8 168 aa6.17□□□□□ -1.42
COL28A1-201ENST00000399429 A0A1B0GW54 56 aa6.17□□□□□ -1.42
COL28A1-201ENST00000399429 A0A1W2PNM2 257 aa6.17□□□□□ -1.42
COL28A1-201ENST00000399429 SERTAD4-AS1Q5TG53 156 aa6.17□□□□□ -1.42
COL28A1-201ENST00000399429 SPINK6Q6UWN8 80 aa6.17□□□□□ -1.42
COL28A1-201ENST00000399429 LOC101927531A0A1B0GV80 90 aa6.16□□□□□ -1.42
COL28A1-201ENST00000399429 ZNF292O60281 2723 aa6.16□□□□□ -1.42
COL28A1-201ENST00000399429 IGLV9-49A0A0B4J1Y8 123 aa6.16□□□□□ -1.42
COL28A1-201ENST00000399429 C7orf65Q6ZTY9 151 aa6.16□□□□□ -1.42
COL28A1-201ENST00000399429 X6R8D5 127 aa6.16□□□□□ -1.42
COL28A1-201ENST00000399429 GVQW2A0A096LPI5 108 aaPredicted RBP6.15□□□□□ -1.42
COL28A1-201ENST00000399429 IGHV6-1A0A0B4J1U7 121 aa6.15□□□□□ -1.42
COL28A1-201ENST00000399429 INAFM1C9JVW0 142 aa6.15□□□□□ -1.42
COL28A1-201ENST00000399429 CSNK1G2-AS1Q8NCQ2 148 aa6.15□□□□□ -1.43
COL28A1-201ENST00000399429 KRTAP10-9P60411 292 aa6.14□□□□□ -1.43
COL28A1-201ENST00000399429 MDFIQ99750 246 aa6.14□□□□□ -1.43
COL28A1-201ENST00000399429 C16orf90A8MZG2 172 aa6.13□□□□□ -1.43
COL28A1-201ENST00000399429 Q5VV11 94 aa6.12□□□□□ -1.43
COL28A1-201ENST00000399429 FAM168BA1KXE4 195 aa6.12□□□□□ -1.43
COL28A1-201ENST00000399429 H3BPC8 53 aa6.12□□□□□ -1.43
COL28A1-201ENST00000399429 C4orf48Q5BLP8 95 aa6.12□□□□□ -1.43
COL28A1-201ENST00000399429 LCA10Q71F78 164 aa6.12□□□□□ -1.43
COL28A1-201ENST00000399429 HECTD1Q9ULT8 2610 aa6.11□□□□□ -1.43
COL28A1-201ENST00000399429 SPENQ96T58 3664 aaKnown RBP6.11□□□□□ -1.43
COL28A1-201ENST00000399429 DSCR10P59022 87 aa6.11□□□□□ -1.43
COL28A1-201ENST00000399429 Q8N9P0 234 aaPredicted RBP6.11□□□□□ -1.43
COL28A1-201ENST00000399429 KCNQ1DNQ9H478 68 aa6.1□□□□□ -1.43
COL28A1-201ENST00000399429 LINC00612Q8N6U2 182 aa6.1□□□□□ -1.43
COL28A1-201ENST00000399429 FLNAP21333 2647 aaKnown RBP6.1□□□□□ -1.43
COL28A1-201ENST00000399429 DMDP11532 3685 aa6.1□□□□□ -1.43
COL28A1-201ENST00000399429 A8MU10 97 aa6.09□□□□□ -1.43
COL28A1-201ENST00000399429 CDC42SE1Q9NRR8 79 aa6.09□□□□□ -1.43
COL28A1-201ENST00000399429 LINC00588Q9Y4M8 146 aa6.09□□□□□ -1.43
COL28A1-201ENST00000399429 LAMA5O15230 3695 aa6.09□□□□□ -1.44
COL28A1-201ENST00000399429 IGLV5-48A0A075B6I7 105 aa6.08□□□□□ -1.44
COL28A1-201ENST00000399429 C14orf177Q52M58 125 aa6.08□□□□□ -1.44
COL28A1-201ENST00000399429 CUBNO60494 3623 aa6.08□□□□□ -1.44
COL28A1-201ENST00000399429 IGFL1Q6UW32 110 aa6.08□□□□□ -1.44
COL28A1-201ENST00000399429 RELNP78509 3460 aa6.08□□□□□ -1.44
COL28A1-201ENST00000399429 SVEP1Q4LDE5 3571 aa6.07□□□□□ -1.44
COL28A1-201ENST00000399429 C8orf87E5RJ46 101 aa6.07□□□□□ -1.44
COL28A1-201ENST00000399429 PRR34Q9NV39 138 aa6.07□□□□□ -1.44
COL28A1-201ENST00000399429 TEX15Q9BXT5 2789 aa6.07□□□□□ -1.44
COL28A1-201ENST00000399429 A0A1B0GU69 56 aa6.07□□□□□ -1.44
COL28A1-201ENST00000399429 RETNLBQ9BQ08 111 aa6.07□□□□□ -1.44
COL28A1-201ENST00000399429 C19orf73Q9NVV2 129 aa6.07□□□□□ -1.44
COL28A1-201ENST00000399429 OXLD1Q5BKU9 147 aa6.06□□□□□ -1.44
COL28A1-201ENST00000399429 ZANQ9Y493 2812 aa6.05□□□□□ -1.44
COL28A1-201ENST00000399429 SPANXA2-OT1Q8N9U9 137 aa6.05□□□□□ -1.44
COL28A1-201ENST00000399429 A8MWP4 228 aa6.05□□□□□ -1.44
COL28A1-201ENST00000399429 PRAC1Q96KF2 57 aa6.05□□□□□ -1.44
COL28A1-201ENST00000399429 IGLV1-50A0A075B6I6 118 aa6.04□□□□□ -1.44
COL28A1-201ENST00000399429 H3BS24 57 aa6.04□□□□□ -1.44
COL28A1-201ENST00000399429 C15orf56Q8N910 161 aa6.04□□□□□ -1.44
COL28A1-201ENST00000399429 MUC3AQ02505 3323 aa6.04□□□□□ -1.44
COL28A1-201ENST00000399429 SMR3AQ99954 134 aa6.03□□□□□ -1.44
COL28A1-201ENST00000399429 TP53AIP1Q9HCN2 124 aa6.03□□□□□ -1.44
COL28A1-201ENST00000399429 ITPR3Q14573 2671 aa6.03□□□□□ -1.44
COL28A1-201ENST00000399429 DCHS2Q6V1P9 2916 aa6.03□□□□□ -1.44
COL28A1-201ENST00000399429 BAHCC1Q9P281 2608 aa6.03□□□□□ -1.44
COL28A1-201ENST00000399429 IGLV8-61A0A075B6I0 122 aa6.03□□□□□ -1.44
COL28A1-201ENST00000399429 Q75L30 129 aa6.02□□□□□ -1.45
COL28A1-201ENST00000399429 SPINK1P00995 79 aa6.02□□□□□ -1.45
COL28A1-201ENST00000399429 Q8NAQ8 132 aa6.01□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 91.6 ms