RNA–Protein interactions for RNA: ENST00000397906.6

TTC28-201, Transcript of tetratricopeptide repeat domain 28, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene TTC28, Length 11,795 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28-201ENST00000397906 MRPL34Q9BQ48 92 aaKnown RBP7.45□□□□□ -1.22
TTC28-201ENST00000397906 LINC00528Q8N1L1 170 aa7.45□□□□□ -1.22
TTC28-201ENST00000397906 A0A1B0GW54 56 aa7.44□□□□□ -1.22
TTC28-201ENST00000397906 APLNQ9ULZ1 77 aa7.44□□□□□ -1.22
TTC28-201ENST00000397906 LITAFQ99732 161 aa7.44□□□□□ -1.22
TTC28-201ENST00000397906 KCNQ1DNQ9H478 68 aa7.44□□□□□ -1.22
TTC28-201ENST00000397906 C8orf87E5RJ46 101 aa7.44□□□□□ -1.22
TTC28-201ENST00000397906 LINC00336Q6ZUF6 198 aa7.43□□□□□ -1.22
TTC28-201ENST00000397906 PSORS1C2Q9UIG4 136 aa7.42□□□□□ -1.22
TTC28-201ENST00000397906 IGLV7-43P04211 117 aa7.42□□□□□ -1.22
TTC28-201ENST00000397906 PRR34Q9NV39 138 aa7.42□□□□□ -1.22
TTC28-201ENST00000397906 CEP350Q5VT06 3117 aa7.41□□□□□ -1.22
TTC28-201ENST00000397906 KRTAP1-1Q07627 177 aa7.41□□□□□ -1.22
TTC28-201ENST00000397906 LOC101927531A0A1B0GV80 90 aa7.41□□□□□ -1.22
TTC28-201ENST00000397906 IGLV5-37A0A075B6J1 123 aa7.41□□□□□ -1.22
TTC28-201ENST00000397906 KLK9Q2XQG4 91 aa7.4□□□□□ -1.22
TTC28-201ENST00000397906 C9orf163Q8N9P6 203 aa7.4□□□□□ -1.22
TTC28-201ENST00000397906 LINC01554Q52M75 96 aa7.39□□□□□ -1.23
TTC28-201ENST00000397906 EIF4EBP3O60516 100 aaPredicted RBP7.37□□□□□ -1.23
TTC28-201ENST00000397906 TNP2Q05952 138 aa7.37□□□□□ -1.23
TTC28-201ENST00000397906 LINC01600Q96MT4 127 aa7.37□□□□□ -1.23
TTC28-201ENST00000397906 C8orf17Q9NRJ1 99 aa7.37□□□□□ -1.23
TTC28-201ENST00000397906 H3BPC8 53 aa7.36□□□□□ -1.23
TTC28-201ENST00000397906 Q8N377 158 aa7.36□□□□□ -1.23
TTC28-201ENST00000397906 RBM12B-AS1Q9P1G2 102 aa7.36□□□□□ -1.23
TTC28-201ENST00000397906 PRO0461Q9UI25 63 aa7.36□□□□□ -1.23
TTC28-201ENST00000397906 A0A1B0GVX0 72 aa7.35□□□□□ -1.23
TTC28-201ENST00000397906 EPG5Q9HCE0 2579 aa7.35□□□□□ -1.23
TTC28-201ENST00000397906 HECTD1Q9ULT8 2610 aa7.35□□□□□ -1.23
TTC28-201ENST00000397906 SSBP3-AS1Q7Z2R9 100 aa7.34□□□□□ -1.23
TTC28-201ENST00000397906 ZNF575Q86XF7 245 aa7.34□□□□□ -1.23
TTC28-201ENST00000397906 SPINT4Q6UDR6 99 aa7.34□□□□□ -1.24
TTC28-201ENST00000397906 COA5Q86WW8 74 aa7.33□□□□□ -1.24
TTC28-201ENST00000397906 LINC00612Q8N6U2 182 aa7.33□□□□□ -1.24
TTC28-201ENST00000397906 PRR15Q8IV56 129 aa7.32□□□□□ -1.24
TTC28-201ENST00000397906 ERC2-IT1O76042 136 aa7.32□□□□□ -1.24
TTC28-201ENST00000397906 C4orf26Q17RF5 130 aa7.31□□□□□ -1.24
TTC28-201ENST00000397906 TLX1NBP0CAT3 122 aa7.31□□□□□ -1.24
TTC28-201ENST00000397906 SPRR4Q96PI1 79 aa7.31□□□□□ -1.24
TTC28-201ENST00000397906 M0R2T5 61 aa7.3□□□□□ -1.24
TTC28-201ENST00000397906 Q8N1X5 172 aa7.3□□□□□ -1.24
TTC28-201ENST00000397906 A0A0D9SG42 100 aa7.29□□□□□ -1.24
TTC28-201ENST00000397906 CNBPP62633 177 aaKnown RBP7.28□□□□□ -1.24
TTC28-201ENST00000397906 MKI67P46013 3256 aaKnown RBP7.27□□□□□ -1.25
TTC28-201ENST00000397906 PLA2G2DQ9UNK4 145 aa7.26□□□□□ -1.25
TTC28-201ENST00000397906 Q6ZSA8 131 aa7.25□□□□□ -1.25
TTC28-201ENST00000397906 PRR26Q8N8Z3 221 aa7.25□□□□□ -1.25
TTC28-201ENST00000397906 BRCA2P51587 3418 aa7.25□□□□□ -1.25
TTC28-201ENST00000397906 BPTFQ12830 3046 aa7.25□□□□□ -1.25
TTC28-201ENST00000397906 IGLV5-48A0A075B6I7 105 aa7.25□□□□□ -1.25
TTC28-201ENST00000397906 PRRC2CQ9Y520 2896 aaKnown RBP7.24□□□□□ -1.25
TTC28-201ENST00000397906 LAMA3Q16787 3333 aa7.24□□□□□ -1.25
TTC28-201ENST00000397906 FLNBO75369 2602 aaKnown RBP7.23□□□□□ -1.25
TTC28-201ENST00000397906 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP7.23□□□□□ -1.25
TTC28-201ENST00000397906 IGLV7-46A0A075B6I9 117 aa7.22□□□□□ -1.25
TTC28-201ENST00000397906 A8MUN3 132 aa7.21□□□□□ -1.26
TTC28-201ENST00000397906 UQCR11O14957 56 aa7.21□□□□□ -1.26
TTC28-201ENST00000397906 USP24Q9UPU5 2620 aa7.2□□□□□ -1.26
TTC28-201ENST00000397906 CRIPTQ9P021 101 aa7.19□□□□□ -1.26
TTC28-201ENST00000397906 XIRP2A4UGR9 3374 aa7.19□□□□□ -1.26
TTC28-201ENST00000397906 PRO0628Q9UI54 55 aa7.19□□□□□ -1.26
TTC28-201ENST00000397906 MIR22HGQ0VDD5 57 aa7.18□□□□□ -1.26
TTC28-201ENST00000397906 CR1P17927 2039 aa7.18□□□□□ -1.26
TTC28-201ENST00000397906 MGAM2Q2M2H8 2515 aa7.17□□□□□ -1.26
TTC28-201ENST00000397906 A0A1W2PNM2 257 aa7.16□□□□□ -1.26
TTC28-201ENST00000397906 CHD7Q9P2D1 2997 aa7.14□□□□□ -1.27
TTC28-201ENST00000397906 FLNAP21333 2647 aaKnown RBP7.13□□□□□ -1.27
TTC28-201ENST00000397906 FAM104AQ969W3 186 aa7.12□□□□□ -1.27
TTC28-201ENST00000397906 RANBP2P49792 3224 aaKnown RBP7.12□□□□□ -1.27
TTC28-201ENST00000397906 CDH23Q9H251 3354 aa7.1□□□□□ -1.27
TTC28-201ENST00000397906 Q5VSD8 79 aa7.1□□□□□ -1.27
TTC28-201ENST00000397906 ITPR3Q14573 2671 aa7.09□□□□□ -1.27
TTC28-201ENST00000397906 RPS28P62857 69 aaKnown RBP7.07□□□□□ -1.28
TTC28-201ENST00000397906 CAMK2N1Q7Z7J9 78 aa7.05□□□□□ -1.28
TTC28-201ENST00000397906 HELZ2Q9BYK8 2649 aaKnown RBP7.05□□□□□ -1.28
TTC28-201ENST00000397906 HTTP42858 3142 aa7.05□□□□□ -1.28
TTC28-201ENST00000397906 CDC42SE1Q9NRR8 79 aa7.05□□□□□ -1.28
TTC28-201ENST00000397906 CYP4F30PQ9H0H9 118 aa7.04□□□□□ -1.28
TTC28-201ENST00000397906 CD164Q04900 197 aa7.03□□□□□ -1.28
TTC28-201ENST00000397906 KLKP1Q107X0 134 aa7.03□□□□□ -1.28
TTC28-201ENST00000397906 PLAC8Q9NZF1 115 aa7.03□□□□□ -1.28
TTC28-201ENST00000397906 MAST4O15021 2626 aa7□□□□□ -1.29
TTC28-201ENST00000397906 WIPF1O43516 503 aa7□□□□□ -1.29
TTC28-201ENST00000397906 CFAP46Q8IYW2 2715 aa7□□□□□ -1.29
TTC28-201ENST00000397906 KRTAP1-5Q9BYS1 174 aa7□□□□□ -1.29
TTC28-201ENST00000397906 H7BZZ5 65 aa6.99□□□□□ -1.29
TTC28-201ENST00000397906 KRTAP10-2P60368 255 aa6.99□□□□□ -1.29
TTC28-201ENST00000397906 S4R3F8 94 aa6.98□□□□□ -1.29
TTC28-201ENST00000397906 PRUNE2Q8WUY3 3088 aa6.98□□□□□ -1.29
TTC28-201ENST00000397906 ATRQ13535 2644 aa6.98□□□□□ -1.29
TTC28-201ENST00000397906 LCE6AA0A183 80 aa6.97□□□□□ -1.29
TTC28-201ENST00000397906 FAM229BQ4G0N7 80 aa6.97□□□□□ -1.29
TTC28-201ENST00000397906 UNC80Q8N2C7 3258 aa6.96□□□□□ -1.3
TTC28-201ENST00000397906 CFAP54Q96N23 3096 aa6.96□□□□□ -1.3
TTC28-201ENST00000397906 KRTAP10-1P60331 282 aa6.95□□□□□ -1.3
TTC28-201ENST00000397906 HRES1P13985 223 aa6.94□□□□□ -1.3
TTC28-201ENST00000397906 ZCCHC13Q8WW36 166 aaKnown RBP6.93□□□□□ -1.3
TTC28-201ENST00000397906 Q8NDZ9 215 aa6.93□□□□□ -1.3
TTC28-201ENST00000397906 LAMA2P24043 3122 aaKnown RBP6.93□□□□□ -1.3
TTC28-201ENST00000397906 SPANXA2-OT1Q8N9U9 137 aa6.92□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 72.2 ms