RNA–Protein interactions for RNA: ENST00000373720.3

SNRNP40-202, Transcript of small nuclear ribonucleoprotein U5 subunit 40, humanhuman

TSL 1 (best) BASIC

Gene SNRNP40, Length 1,087 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP40-202ENST00000373720 GAGE2AQ6NT46 116 aa5.72□□□□□ -1.49
SNRNP40-202ENST00000373720 Q6ZRP5 223 aa5.72□□□□□ -1.49
SNRNP40-202ENST00000373720 LINC00474Q9P2X8 69 aa5.72□□□□□ -1.49
SNRNP40-202ENST00000373720 STAB1Q9NY15 2570 aa5.72□□□□□ -1.49
SNRNP40-202ENST00000373720 TRRAPQ9Y4A5 3859 aa5.72□□□□□ -1.49
SNRNP40-202ENST00000373720 FBN1P35555 2871 aaKnown RBP5.72□□□□□ -1.49
SNRNP40-202ENST00000373720 Q6JHZ5 121 aa5.71□□□□□ -1.5
SNRNP40-202ENST00000373720 UBL5Q9BZL1 73 aa5.71□□□□□ -1.5
SNRNP40-202ENST00000373720 XAGE1AQ9HD64 81 aa5.71□□□□□ -1.5
SNRNP40-202ENST00000373720 BCE1O60756 84 aa5.7□□□□□ -1.5
SNRNP40-202ENST00000373720 LCE5AQ5TCM9 118 aa5.7□□□□□ -1.5
SNRNP40-202ENST00000373720 UBE2DNLQ8IWF7 75 aa5.7□□□□□ -1.5
SNRNP40-202ENST00000373720 LAMTOR3Q9UHA4 124 aa5.7□□□□□ -1.5
SNRNP40-202ENST00000373720 APLNQ9ULZ1 77 aa5.7□□□□□ -1.5
SNRNP40-202ENST00000373720 COL6A5A8TX70 2615 aa5.7□□□□□ -1.5
SNRNP40-202ENST00000373720 SPRR1AP35321 89 aa5.69□□□□□ -1.5
SNRNP40-202ENST00000373720 NDUFV3P56181 108 aaKnown RBP5.69□□□□□ -1.5
SNRNP40-202ENST00000373720 LINC00526Q96FQ7 95 aa5.69□□□□□ -1.5
SNRNP40-202ENST00000373720 ANAPC13Q9BS18 74 aa5.69□□□□□ -1.5
SNRNP40-202ENST00000373720 DNAH3Q8TD57 4116 aa5.68□□□□□ -1.5
SNRNP40-202ENST00000373720 RPL37AP8A6NKH3 93 aa5.68□□□□□ -1.5
SNRNP40-202ENST00000373720 C16orf90A8MZG2 172 aa5.68□□□□□ -1.5
SNRNP40-202ENST00000373720 PSCAO43653 123 aa5.68□□□□□ -1.5
SNRNP40-202ENST00000373720 C9orf129Q5T035 196 aaKnown RBP5.68□□□□□ -1.5
SNRNP40-202ENST00000373720 Q6ZQY7 126 aa5.68□□□□□ -1.5
SNRNP40-202ENST00000373720 Q8NDZ9 215 aa5.68□□□□□ -1.5
SNRNP40-202ENST00000373720 C14orf132Q9NPU4 83 aa5.68□□□□□ -1.5
SNRNP40-202ENST00000373720 IGLV1-50A0A075B6I6 118 aa5.67□□□□□ -1.5
SNRNP40-202ENST00000373720 KRTAP21-3Q3LHN1 58 aa5.67□□□□□ -1.5
SNRNP40-202ENST00000373720 Q6ZQT0 140 aa5.67□□□□□ -1.5
SNRNP40-202ENST00000373720 PKD1L1Q8TDX9 2849 aa5.66□□□□□ -1.5
SNRNP40-202ENST00000373720 TRBV7-4A0A0J9YYF1 115 aa5.66□□□□□ -1.5
SNRNP40-202ENST00000373720 H0Y9J4 135 aa5.66□□□□□ -1.5
SNRNP40-202ENST00000373720 SLPIP03973 132 aa5.66□□□□□ -1.5
SNRNP40-202ENST00000373720 Q6ZRX8 168 aa5.66□□□□□ -1.5
SNRNP40-202ENST00000373720 MRPL55Q7Z7F7 128 aaKnown RBP5.66□□□□□ -1.5
SNRNP40-202ENST00000373720 ETDCA0A1B0GVM5 59 aa5.65□□□□□ -1.5
SNRNP40-202ENST00000373720 ATOX1O00244 68 aa5.65□□□□□ -1.5
SNRNP40-202ENST00000373720 CXCL6P80162 114 aa5.65□□□□□ -1.5
SNRNP40-202ENST00000373720 SMIM20Q8N5G0 67 aa5.65□□□□□ -1.5
SNRNP40-202ENST00000373720 C7orf33Q8WU49 177 aa5.65□□□□□ -1.5
SNRNP40-202ENST00000373720 LINC00846Q9NV44 126 aa5.64□□□□□ -1.51
SNRNP40-202ENST00000373720 IGLV5-48A0A075B6I7 105 aa5.63□□□□□ -1.51
SNRNP40-202ENST00000373720 NBDYA0A0U1RRE5 68 aa5.63□□□□□ -1.51
SNRNP40-202ENST00000373720 B5MCH6 92 aa5.63□□□□□ -1.51
SNRNP40-202ENST00000373720 KRTAP4-16G5E9R7 235 aaPredicted RBP5.63□□□□□ -1.51
SNRNP40-202ENST00000373720 PRB2P02812 416 aaPredicted RBP5.63□□□□□ -1.51
SNRNP40-202ENST00000373720 ANK2Q01484 3957 aa5.63□□□□□ -1.51
SNRNP40-202ENST00000373720 NBEAL1Q6ZS30 2694 aa5.62□□□□□ -1.51
SNRNP40-202ENST00000373720 DNHD1Q96M86 4753 aa5.62□□□□□ -1.51
SNRNP40-202ENST00000373720 REG3GQ6UW15 175 aa5.62□□□□□ -1.51
SNRNP40-202ENST00000373720 C9orf163Q8N9P6 203 aa5.62□□□□□ -1.51
SNRNP40-202ENST00000373720 SMCR5Q8TEV8 140 aa5.62□□□□□ -1.51
SNRNP40-202ENST00000373720 HIST1H4AP62805 103 aaKnown RBP5.61□□□□□ -1.51
SNRNP40-202ENST00000373720 NOTCH1P46531 2555 aa5.6□□□□□ -1.51
SNRNP40-202ENST00000373720 FUSP35637 526 aaKnown RBP eCLIP5.6□□□□□ -1.51
SNRNP40-202ENST00000373720 SERTAD4-AS1Q5TG53 156 aa5.6□□□□□ -1.51
SNRNP40-202ENST00000373720 TENM3Q9P273 2699 aa5.59□□□□□ -1.51
SNRNP40-202ENST00000373720 FAM236AA0A1B0GUQ0 79 aa5.59□□□□□ -1.51
SNRNP40-202ENST00000373720 FAM236BA0A1B0GV22 79 aa5.59□□□□□ -1.51
SNRNP40-202ENST00000373720 UQCRQO14949 82 aa5.59□□□□□ -1.51
SNRNP40-202ENST00000373720 MGAM2Q2M2H8 2515 aa5.59□□□□□ -1.51
SNRNP40-202ENST00000373720 CMYA5Q8N3K9 4069 aa5.58□□□□□ -1.52
SNRNP40-202ENST00000373720 EPM2AB3EWF7 344 aa5.57□□□□□ -1.52
SNRNP40-202ENST00000373720 F8WEM9 126 aa5.57□□□□□ -1.52
SNRNP40-202ENST00000373720 LRCOL1A6NCL2 159 aa5.56□□□□□ -1.52
SNRNP40-202ENST00000373720 RPL37AP61513 92 aaKnown RBP5.56□□□□□ -1.52
SNRNP40-202ENST00000373720 Q8N377 158 aa5.56□□□□□ -1.52
SNRNP40-202ENST00000373720 IGLV8-61A0A075B6I0 122 aa5.55□□□□□ -1.52
SNRNP40-202ENST00000373720 COX7CP15954 63 aa5.55□□□□□ -1.52
SNRNP40-202ENST00000373720 SPRR1BP22528 89 aa5.55□□□□□ -1.52
SNRNP40-202ENST00000373720 CASC10Q5T4H9 136 aa5.55□□□□□ -1.52
SNRNP40-202ENST00000373720 Q6ZVQ6 151 aa5.55□□□□□ -1.52
SNRNP40-202ENST00000373720 FAM19A5Q7Z5A7 132 aaPredicted RBP5.55□□□□□ -1.52
SNRNP40-202ENST00000373720 C3orf22Q8N5N4 141 aa5.55□□□□□ -1.52
SNRNP40-202ENST00000373720 SPRR4Q96PI1 79 aa5.55□□□□□ -1.52
SNRNP40-202ENST00000373720 KRTAP1-5Q9BYS1 174 aa5.55□□□□□ -1.52
SNRNP40-202ENST00000373720 A0A096LNI7 61 aa5.54□□□□□ -1.52
SNRNP40-202ENST00000373720 LINC01547P58512 204 aaPredicted RBP5.54□□□□□ -1.52
SNRNP40-202ENST00000373720 UBE2BP63146 152 aa5.54□□□□□ -1.52
SNRNP40-202ENST00000373720 NREPQ16612 68 aa5.54□□□□□ -1.52
SNRNP40-202ENST00000373720 Q6ZRN7 208 aaPredicted RBP5.54□□□□□ -1.52
SNRNP40-202ENST00000373720 SERP2Q8N6R1 65 aa5.54□□□□□ -1.52
SNRNP40-202ENST00000373720 KRTAP9-3Q9BYQ3 159 aa5.54□□□□□ -1.52
SNRNP40-202ENST00000373720 CRYGAP11844 174 aa5.53□□□□□ -1.52
SNRNP40-202ENST00000373720 Q9BRP9 147 aa5.53□□□□□ -1.52
SNRNP40-202ENST00000373720 KRTAP17-1Q9BYP8 105 aa5.53□□□□□ -1.52
SNRNP40-202ENST00000373720 IGKV3D-7A0A0C4DH55 119 aa5.52□□□□□ -1.53
SNRNP40-202ENST00000373720 C1orf137Q5JT78 98 aa5.52□□□□□ -1.53
SNRNP40-202ENST00000373720 Q6ZR54 194 aa5.52□□□□□ -1.53
SNRNP40-202ENST00000373720 KRTAP7-1Q8IUC3 87 aa5.52□□□□□ -1.53
SNRNP40-202ENST00000373720 Q8NBF4 154 aa5.52□□□□□ -1.53
SNRNP40-202ENST00000373720 HUWE1Q7Z6Z7 4374 aaKnown RBP5.51□□□□□ -1.53
SNRNP40-202ENST00000373720 FAM168BA1KXE4 195 aa5.51□□□□□ -1.53
SNRNP40-202ENST00000373720 HAMPP81172 84 aa5.51□□□□□ -1.53
SNRNP40-202ENST00000373720 ZNF706Q9Y5V0 76 aaPredicted RBP5.51□□□□□ -1.53
SNRNP40-202ENST00000373720 STAB2Q8WWQ8 2551 aa5.5□□□□□ -1.53
SNRNP40-202ENST00000373720 FAM19A1Q7Z5A9 133 aa5.5□□□□□ -1.53
SNRNP40-202ENST00000373720 TRAV7A0A075B6U4 112 aa5.49□□□□□ -1.53
SNRNP40-202ENST00000373720 A0A087WTM6 91 aa5.49□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 67.6 ms