RNA–Protein interactions for RNA: ENST00000373602.9

CCDC28B-201, Transcript of coiled-coil domain containing 28B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28B, Length 1,089 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-201ENST00000373602 LINC01545Q5VT33 79 aa12.4□□□□□ -0.42
CCDC28B-201ENST00000373602 PET117Q6UWS5 81 aa12.39□□□□□ -0.43
CCDC28B-201ENST00000373602 TRAV23DV6A0A075B6W5 121 aa12.38□□□□□ -0.43
CCDC28B-201ENST00000373602 MUC2Q02817 5179 aa12.38□□□□□ -0.43
CCDC28B-201ENST00000373602 CDIP1Q9H305 208 aa12.37□□□□□ -0.43
CCDC28B-201ENST00000373602 LITAFQ99732 161 aa12.36□□□□□ -0.43
CCDC28B-201ENST00000373602 ZNF73O43830 326 aaPredicted RBP12.35□□□□□ -0.43
CCDC28B-201ENST00000373602 TIMM17BO60830 172 aa12.34□□□□□ -0.43
CCDC28B-201ENST00000373602 SPINK1P00995 79 aa12.34□□□□□ -0.43
CCDC28B-201ENST00000373602 JOSD1Q15040 202 aaPredicted RBP12.34□□□□□ -0.43
CCDC28B-201ENST00000373602 FP248Q71RG6 208 aaPredicted RBP12.34□□□□□ -0.43
CCDC28B-201ENST00000373602 LINC00308Q8TCZ7 52 aa12.34□□□□□ -0.43
CCDC28B-201ENST00000373602 IGLV9-49A0A0B4J1Y8 123 aa12.32□□□□□ -0.44
CCDC28B-201ENST00000373602 C3orf79P0CE67 100 aa12.32□□□□□ -0.44
CCDC28B-201ENST00000373602 MOBPQ13875 183 aa12.32□□□□□ -0.44
CCDC28B-201ENST00000373602 COA6Q5JTJ3 125 aaKnown RBP12.32□□□□□ -0.44
CCDC28B-201ENST00000373602 SSBP3-AS1Q7Z2R9 100 aa12.32□□□□□ -0.44
CCDC28B-201ENST00000373602 SPANXCQ9NY87 97 aa12.32□□□□□ -0.44
CCDC28B-201ENST00000373602 MUC17Q685J3 4493 aa12.31□□□□□ -0.44
CCDC28B-201ENST00000373602 A0A0U1RQV1 116 aa12.31□□□□□ -0.44
CCDC28B-201ENST00000373602 CBY1Q9Y3M2 126 aa12.31□□□□□ -0.44
CCDC28B-201ENST00000373602 ZNF815PA8K554 130 aa12.3□□□□□ -0.44
CCDC28B-201ENST00000373602 TTTY13Q9BZ97 58 aa12.29□□□□□ -0.44
CCDC28B-201ENST00000373602 HINT1P49773 126 aaPredicted RBP12.27□□□□□ -0.45
CCDC28B-201ENST00000373602 RPS29P62273 56 aaKnown RBP12.27□□□□□ -0.45
CCDC28B-201ENST00000373602 C5orf52A6NGY3 159 aa12.26□□□□□ -0.45
CCDC28B-201ENST00000373602 KRTDAPP60985 99 aa12.26□□□□□ -0.45
CCDC28B-201ENST00000373602 OR13C6PQ8NH95 151 aa12.26□□□□□ -0.45
CCDC28B-201ENST00000373602 ST20-AS1Q8NBB2 130 aa12.25□□□□□ -0.45
CCDC28B-201ENST00000373602 SPANXDQ9BXN6 97 aa12.25□□□□□ -0.45
CCDC28B-201ENST00000373602 KRTAP13-3Q3SY46 172 aa12.23□□□□□ -0.45
CCDC28B-201ENST00000373602 Q8N377 158 aa12.22□□□□□ -0.45
CCDC28B-201ENST00000373602 C9orf153Q5TBE3 101 aa12.21□□□□□ -0.45
CCDC28B-201ENST00000373602 LINC00518Q8N0U6 118 aa12.21□□□□□ -0.45
CCDC28B-201ENST00000373602 C20orf202A1L168 122 aa12.2□□□□□ -0.46
CCDC28B-201ENST00000373602 SPRR1BP22528 89 aa12.19□□□□□ -0.46
CCDC28B-201ENST00000373602 ANKRD39Q53RE8 183 aa12.19□□□□□ -0.46
CCDC28B-201ENST00000373602 DHRS4-AS1Q9P1J3 65 aa12.19□□□□□ -0.46
CCDC28B-201ENST00000373602 SCGB1D4Q6XE38 83 aa12.18□□□□□ -0.46
CCDC28B-201ENST00000373602 SLC25A20O43772 301 aa12.17□□□□□ -0.46
CCDC28B-201ENST00000373602 ELOF1P60002 83 aaKnown RBP12.16□□□□□ -0.46
CCDC28B-201ENST00000373602 COX7BP24311 80 aa12.15□□□□□ -0.46
CCDC28B-201ENST00000373602 C6orf99Q4VX62 202 aa12.15□□□□□ -0.46
CCDC28B-201ENST00000373602 ATOH7Q8N100 152 aa12.14□□□□□ -0.47
CCDC28B-201ENST00000373602 IFITM1P13164 125 aa12.13□□□□□ -0.47
CCDC28B-201ENST00000373602 SLC25A34Q6PIV7 304 aa12.13□□□□□ -0.47
CCDC28B-201ENST00000373602 COPS9Q8WXC6 57 aa12.13□□□□□ -0.47
CCDC28B-201ENST00000373602 AKR1D1P51857 326 aa12.12□□□□□ -0.47
CCDC28B-201ENST00000373602 Q6ZVH6 145 aa12.11□□□□□ -0.47
CCDC28B-201ENST00000373602 PCP2Q8IVA1 136 aa12.11□□□□□ -0.47
CCDC28B-201ENST00000373602 ASB16-AS1Q495Z4 193 aa12.1□□□□□ -0.47
CCDC28B-201ENST00000373602 LCE2AQ5TA79 106 aaPredicted RBP12.1□□□□□ -0.47
CCDC28B-201ENST00000373602 LAMTOR3Q9UHA4 124 aa12.1□□□□□ -0.47
CCDC28B-201ENST00000373602 FAT4Q6V0I7 4981 aa12.1□□□□□ -0.47
CCDC28B-201ENST00000373602 TRBV7-6A0A0J9YX20 115 aa12.09□□□□□ -0.47
CCDC28B-201ENST00000373602 MUSTN1Q8IVN3 82 aa12.08□□□□□ -0.48
CCDC28B-201ENST00000373602 A6NDN8 102 aa12.06□□□□□ -0.48
CCDC28B-201ENST00000373602 SNRPEP62304 92 aaKnown RBP12.06□□□□□ -0.48
CCDC28B-201ENST00000373602 TAL2Q16559 108 aa12.06□□□□□ -0.48
CCDC28B-201ENST00000373602 A0A1B0GWB2 263 aa12.05□□□□□ -0.48
CCDC28B-201ENST00000373602 DEFB105AQ8NG35 78 aa12.04□□□□□ -0.48
CCDC28B-201ENST00000373602 TEX49A0A1B0GTD5 131 aa12.03□□□□□ -0.48
CCDC28B-201ENST00000373602 SEC61BP60468 96 aaKnown RBP12.03□□□□□ -0.48
CCDC28B-201ENST00000373602 HRCT1Q6UXD1 115 aa12.02□□□□□ -0.49
CCDC28B-201ENST00000373602 HIST3H2BBQ8N257 126 aa12.02□□□□□ -0.49
CCDC28B-201ENST00000373602 LIMD2Q9BT23 127 aa12.02□□□□□ -0.49
CCDC28B-201ENST00000373602 Q1RN00 199 aa12.01□□□□□ -0.49
CCDC28B-201ENST00000373602 XP32Q5T750 250 aa12□□□□□ -0.49
CCDC28B-201ENST00000373602 HIST1H2BLQ99880 126 aa12□□□□□ -0.49
CCDC28B-201ENST00000373602 TRAV13-2A0A0B4J235 113 aa11.99□□□□□ -0.49
CCDC28B-201ENST00000373602 SMIM29Q86T20 159 aa11.99□□□□□ -0.49
CCDC28B-201ENST00000373602 IGLV5-48A0A075B6I7 105 aa11.98□□□□□ -0.49
CCDC28B-201ENST00000373602 A4D1N5 150 aa11.98□□□□□ -0.49
CCDC28B-201ENST00000373602 S100A2P29034 98 aa11.98□□□□□ -0.49
CCDC28B-201ENST00000373602 LINC01547P58512 204 aaPredicted RBP11.98□□□□□ -0.49
CCDC28B-201ENST00000373602 CD164Q04900 197 aa11.98□□□□□ -0.49
CCDC28B-201ENST00000373602 PRO1933Q9H354 126 aa11.98□□□□□ -0.49
CCDC28B-201ENST00000373602 KRTAP4-1Q9BYQ7 146 aa11.97□□□□□ -0.49
CCDC28B-201ENST00000373602 SMIM11BQ8TCY0 68 aa11.96□□□□□ -0.49
CCDC28B-201ENST00000373602 HSBP1L1C9JCN9 74 aa11.93□□□□□ -0.5
CCDC28B-201ENST00000373602 NHP2Q9NX24 153 aaKnown RBP11.93□□□□□ -0.5
CCDC28B-201ENST00000373602 H7C2G1 150 aa11.92□□□□□ -0.5
CCDC28B-201ENST00000373602 S100A1P23297 94 aa11.92□□□□□ -0.5
CCDC28B-201ENST00000373602 Q5XG85 94 aa11.9□□□□□ -0.5
CCDC28B-201ENST00000373602 S100A6P06703 90 aa11.88□□□□□ -0.51
CCDC28B-201ENST00000373602 VAMP3Q15836 100 aa11.87□□□□□ -0.51
CCDC28B-201ENST00000373602 A0A0G2JQZ4 141 aa11.86□□□□□ -0.51
CCDC28B-201ENST00000373602 KRTAP9-2Q9BYQ4 174 aa11.86□□□□□ -0.51
CCDC28B-201ENST00000373602 C9orf92A6NGG3 77 aa11.84□□□□□ -0.51
CCDC28B-201ENST00000373602 LINC00575Q6W349 94 aa11.84□□□□□ -0.51
CCDC28B-201ENST00000373602 C1orf195Q5TG92 126 aa11.82□□□□□ -0.52
CCDC28B-201ENST00000373602 SCGB1D1O95968 90 aa11.8□□□□□ -0.52
CCDC28B-201ENST00000373602 hADV29S1A0JD25 119 aa11.79□□□□□ -0.52
CCDC28B-201ENST00000373602 Q6ZQY7 126 aa11.78□□□□□ -0.52
CCDC28B-201ENST00000373602 F8WEM9 126 aa11.77□□□□□ -0.53
CCDC28B-201ENST00000373602 COX8AP10176 69 aa11.77□□□□□ -0.53
CCDC28B-201ENST00000373602 PCOTHQ58A44 107 aa11.77□□□□□ -0.53
CCDC28B-201ENST00000373602 HIST1H4GQ99525 98 aa11.76□□□□□ -0.53
CCDC28B-201ENST00000373602 C12orf57Q99622 126 aa11.75□□□□□ -0.53
CCDC28B-201ENST00000373602 TCL1BO95988 128 aa11.74□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 70.7 ms