RNA–Protein interactions for RNA: ENST00000367142.4

NUCKS1-201, Transcript of nuclear casein kinase and cyclin dependent kinase substrate 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NUCKS1, Length 6,496 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUCKS1-201ENST00000367142 KRTAP10-3P60369 221 aa10.22□□□□□ -0.77
NUCKS1-201ENST00000367142 JMJD1CQ15652 2540 aa10.22□□□□□ -0.77
NUCKS1-201ENST00000367142 ZNF575Q86XF7 245 aa10.22□□□□□ -0.77
NUCKS1-201ENST00000367142 CDC42SE1Q9NRR8 79 aa10.21□□□□□ -0.78
NUCKS1-201ENST00000367142 CNBPP62633 177 aaKnown RBP10.2□□□□□ -0.78
NUCKS1-201ENST00000367142 LINC00612Q8N6U2 182 aa10.19□□□□□ -0.78
NUCKS1-201ENST00000367142 Q6ZSA8 131 aa10.19□□□□□ -0.78
NUCKS1-201ENST00000367142 A0A0D9SG42 100 aa10.19□□□□□ -0.78
NUCKS1-201ENST00000367142 A0A1W2PNN7 141 aa10.18□□□□□ -0.78
NUCKS1-201ENST00000367142 IGLV5-48A0A075B6I7 105 aa10.18□□□□□ -0.78
NUCKS1-201ENST00000367142 FAM104AQ969W3 186 aa10.18□□□□□ -0.78
NUCKS1-201ENST00000367142 A0A0G2JQZ4 141 aa10.17□□□□□ -0.78
NUCKS1-201ENST00000367142 MYO9AB2RTY4 2548 aa10.17□□□□□ -0.78
NUCKS1-201ENST00000367142 Q8N1X5 172 aa10.14□□□□□ -0.79
NUCKS1-201ENST00000367142 GIG44P09565 113 aaPredicted RBP10.14□□□□□ -0.79
NUCKS1-201ENST00000367142 A0A096LNT2 108 aa10.13□□□□□ -0.79
NUCKS1-201ENST00000367142 ABCA12Q86UK0 2595 aa10.13□□□□□ -0.79
NUCKS1-201ENST00000367142 M0R2T5 61 aa10.12□□□□□ -0.79
NUCKS1-201ENST00000367142 KLKP1Q107X0 134 aa10.1□□□□□ -0.79
NUCKS1-201ENST00000367142 CASC10Q5T4H9 136 aa10.09□□□□□ -0.79
NUCKS1-201ENST00000367142 IGLV7-46A0A075B6I9 117 aa10.08□□□□□ -0.8
NUCKS1-201ENST00000367142 CD164Q04900 197 aa10.05□□□□□ -0.8
NUCKS1-201ENST00000367142 CAMK2N1Q7Z7J9 78 aa10.05□□□□□ -0.8
NUCKS1-201ENST00000367142 FN1P02751 2386 aaKnown RBP10.05□□□□□ -0.8
NUCKS1-201ENST00000367142 TLN1Q9Y490 2541 aaKnown RBP10.05□□□□□ -0.8
NUCKS1-201ENST00000367142 LUZP6Q538Z0 58 aa10.04□□□□□ -0.8
NUCKS1-201ENST00000367142 EIF4EBP3O60516 100 aaPredicted RBP10.04□□□□□ -0.8
NUCKS1-201ENST00000367142 LINC00483Q53H64 154 aa10.04□□□□□ -0.8
NUCKS1-201ENST00000367142 SPANXA2-OT1Q8N9U9 137 aa10.04□□□□□ -0.8
NUCKS1-201ENST00000367142 ZFYVE26Q68DK2 2539 aa10.02□□□□□ -0.81
NUCKS1-201ENST00000367142 A0A1W2PNM2 257 aa10.02□□□□□ -0.81
NUCKS1-201ENST00000367142 TNP2Q05952 138 aa10.01□□□□□ -0.81
NUCKS1-201ENST00000367142 PRR26Q8N8Z3 221 aa10.01□□□□□ -0.81
NUCKS1-201ENST00000367142 LCA10Q71F78 164 aa9.96□□□□□ -0.82
NUCKS1-201ENST00000367142 KTN1-AS1Q86SY8 53 aa9.95□□□□□ -0.82
NUCKS1-201ENST00000367142 H7BZZ5 65 aa9.94□□□□□ -0.82
NUCKS1-201ENST00000367142 KRTAP1-3Q8IUG1 177 aa9.93□□□□□ -0.82
NUCKS1-201ENST00000367142 ZNF462Q96JM2 2506 aa9.93□□□□□ -0.82
NUCKS1-201ENST00000367142 FAM229BQ4G0N7 80 aa9.91□□□□□ -0.82
NUCKS1-201ENST00000367142 USP9XQ93008 2570 aaPredicted RBP9.91□□□□□ -0.82
NUCKS1-201ENST00000367142 PCSK5Q92824 1860 aa9.91□□□□□ -0.82
NUCKS1-201ENST00000367142 HRES1P13985 223 aa9.91□□□□□ -0.82
NUCKS1-201ENST00000367142 Q1T7F1 81 aa9.91□□□□□ -0.82
NUCKS1-201ENST00000367142 KRTAP1-1Q07627 177 aa9.88□□□□□ -0.83
NUCKS1-201ENST00000367142 A0A1B0GU33 70 aa9.87□□□□□ -0.83
NUCKS1-201ENST00000367142 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP9.86□□□□□ -0.83
NUCKS1-201ENST00000367142 CSAG1Q6PB30 78 aa9.86□□□□□ -0.83
NUCKS1-201ENST00000367142 S4R3F8 94 aa9.86□□□□□ -0.83
NUCKS1-201ENST00000367142 TLN2Q9Y4G6 2542 aa9.85□□□□□ -0.83
NUCKS1-201ENST00000367142 ZCCHC13Q8WW36 166 aaKnown RBP9.82□□□□□ -0.84
NUCKS1-201ENST00000367142 F8P00451 2351 aa9.81□□□□□ -0.84
NUCKS1-201ENST00000367142 PLAC8Q9NZF1 115 aa9.79□□□□□ -0.84
NUCKS1-201ENST00000367142 SEC61BP60468 96 aaKnown RBP9.77□□□□□ -0.84
NUCKS1-201ENST00000367142 CHD8Q9HCK8 2581 aa9.76□□□□□ -0.85
NUCKS1-201ENST00000367142 ANKRD11Q6UB99 2663 aaPredicted RBP9.76□□□□□ -0.85
NUCKS1-201ENST00000367142 DMAC1Q96GE9 116 aa9.75□□□□□ -0.85
NUCKS1-201ENST00000367142 PKD1L2Q7Z442 2459 aa9.75□□□□□ -0.85
NUCKS1-201ENST00000367142 ANKRD17O75179 2603 aaKnown RBP9.74□□□□□ -0.85
NUCKS1-201ENST00000367142 OCR1Q9BZK8 76 aa9.73□□□□□ -0.85
NUCKS1-201ENST00000367142 SETD2Q9BYW2 2564 aaPredicted RBP9.68□□□□□ -0.86
NUCKS1-201ENST00000367142 USP9YO00507 2555 aaPredicted RBP9.68□□□□□ -0.86
NUCKS1-201ENST00000367142 R4GN34 69 aa9.68□□□□□ -0.86
NUCKS1-201ENST00000367142 Q5VSD8 79 aa9.68□□□□□ -0.86
NUCKS1-201ENST00000367142 MMP24-AS1A0A0U1RRL7 71 aa9.66□□□□□ -0.86
NUCKS1-201ENST00000367142 CEP295Q9C0D2 2601 aa9.66□□□□□ -0.86
NUCKS1-201ENST00000367142 WIPF1O43516 503 aa9.65□□□□□ -0.86
NUCKS1-201ENST00000367142 Q75L30 129 aa9.64□□□□□ -0.87
NUCKS1-201ENST00000367142 MTORP42345 2549 aa9.64□□□□□ -0.87
NUCKS1-201ENST00000367142 Q8N9P0 234 aaPredicted RBP9.62□□□□□ -0.87
NUCKS1-201ENST00000367142 SPINK7P58062 85 aa9.61□□□□□ -0.87
NUCKS1-201ENST00000367142 Q5W150 140 aa9.59□□□□□ -0.87
NUCKS1-201ENST00000367142 LINC01558Q9Y6Z2 57 aa9.58□□□□□ -0.88
NUCKS1-201ENST00000367142 LCE6AA0A183 80 aa9.57□□□□□ -0.88
NUCKS1-201ENST00000367142 SPRR1AP35321 89 aa9.55□□□□□ -0.88
NUCKS1-201ENST00000367142 POLQO75417 2590 aa9.54□□□□□ -0.88
NUCKS1-201ENST00000367142 ACANP16112 2415 aa9.54□□□□□ -0.88
NUCKS1-201ENST00000367142 A0A0A0MQY5 61 aa9.53□□□□□ -0.88
NUCKS1-201ENST00000367142 SPRR1BP22528 89 aa9.53□□□□□ -0.88
NUCKS1-201ENST00000367142 SPTBN4Q9H254 2564 aa9.52□□□□□ -0.89
NUCKS1-201ENST00000367142 FASNP49327 2511 aaKnown RBP9.52□□□□□ -0.89
NUCKS1-201ENST00000367142 PLAC4Q8WY50 150 aa9.51□□□□□ -0.89
NUCKS1-201ENST00000367142 OXTP01178 125 aa9.5□□□□□ -0.89
NUCKS1-201ENST00000367142 M0QZ58 72 aa9.48□□□□□ -0.89
NUCKS1-201ENST00000367142 LINC00472Q9H8W2 130 aa9.47□□□□□ -0.89
NUCKS1-201ENST00000367142 FP248Q71RG6 208 aaPredicted RBP9.47□□□□□ -0.89
NUCKS1-201ENST00000367142 KRTAP10-1P60331 282 aa9.46□□□□□ -0.9
NUCKS1-201ENST00000367142 RPL37P61927 97 aaKnown RBP9.43□□□□□ -0.9
NUCKS1-201ENST00000367142 CR1P17927 2039 aa9.41□□□□□ -0.9
NUCKS1-201ENST00000367142 WDR87Q6ZQQ6 2873 aa9.4□□□□□ -0.91
NUCKS1-201ENST00000367142 ROMO1P60602 79 aa9.39□□□□□ -0.91
NUCKS1-201ENST00000367142 Q8NDZ9 215 aa9.39□□□□□ -0.91
NUCKS1-201ENST00000367142 KRTAP10-2P60368 255 aa9.39□□□□□ -0.91
NUCKS1-201ENST00000367142 KRTAP1-5Q9BYS1 174 aa9.39□□□□□ -0.91
NUCKS1-201ENST00000367142 H1FX-AS1Q4G0G2 97 aa9.36□□□□□ -0.91
NUCKS1-201ENST00000367142 PRAC1Q96KF2 57 aa9.36□□□□□ -0.91
NUCKS1-201ENST00000367142 KRTAP26-1Q6PEX3 210 aa9.35□□□□□ -0.91
NUCKS1-201ENST00000367142 ADM2Q7Z4H4 148 aa9.33□□□□□ -0.92
NUCKS1-201ENST00000367142 Q5VV11 94 aa9.31□□□□□ -0.92
NUCKS1-201ENST00000367142 Q6ZR54 194 aa9.26□□□□□ -0.93
NUCKS1-201ENST00000367142 MGAM2Q2M2H8 2515 aa9.22□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms