RNA–Protein interactions for RNA: ENST00000357008.6

CHD4-201, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CHD4, Length 6,496 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-201ENST00000357008 A0A1B0GVX0 72 aa9.76□□□□□ -0.85
CHD4-201ENST00000357008 MIR22HGQ0VDD5 57 aa9.75□□□□□ -0.85
CHD4-201ENST00000357008 PLA2G2DQ9UNK4 145 aa9.75□□□□□ -0.85
CHD4-201ENST00000357008 CD164Q04900 197 aa9.75□□□□□ -0.85
CHD4-201ENST00000357008 SSBP3-AS1Q7Z2R9 100 aa9.75□□□□□ -0.85
CHD4-201ENST00000357008 LINC00612Q8N6U2 182 aa9.75□□□□□ -0.85
CHD4-201ENST00000357008 GIG44P09565 113 aaPredicted RBP9.74□□□□□ -0.85
CHD4-201ENST00000357008 TLX1NBP0CAT3 122 aa9.74□□□□□ -0.85
CHD4-201ENST00000357008 DSCR10P59022 87 aa9.71□□□□□ -0.85
CHD4-201ENST00000357008 C19orf73Q9NVV2 129 aa9.71□□□□□ -0.86
CHD4-201ENST00000357008 PLA2G1BP04054 148 aaKnown RBP9.71□□□□□ -0.86
CHD4-201ENST00000357008 KTN1-AS1Q86SY8 53 aa9.7□□□□□ -0.86
CHD4-201ENST00000357008 SPANXA2-OT1Q8N9U9 137 aa9.69□□□□□ -0.86
CHD4-201ENST00000357008 ZNF861PO60384 105 aa9.68□□□□□ -0.86
CHD4-201ENST00000357008 A0A0G2JQZ4 141 aa9.68□□□□□ -0.86
CHD4-201ENST00000357008 A0A1W2PNN7 141 aa9.68□□□□□ -0.86
CHD4-201ENST00000357008 A0A1W2PNM2 257 aa9.68□□□□□ -0.86
CHD4-201ENST00000357008 OBSCN-AS1Q96MR7 158 aa9.67□□□□□ -0.86
CHD4-201ENST00000357008 LCA10Q71F78 164 aa9.64□□□□□ -0.87
CHD4-201ENST00000357008 CRIPTQ9P021 101 aa9.64□□□□□ -0.87
CHD4-201ENST00000357008 FASNP49327 2511 aaKnown RBP9.63□□□□□ -0.87
CHD4-201ENST00000357008 C9orf163Q8N9P6 203 aa9.63□□□□□ -0.87
CHD4-201ENST00000357008 IGLV5-48A0A075B6I7 105 aa9.62□□□□□ -0.87
CHD4-201ENST00000357008 A0A096LNT2 108 aa9.62□□□□□ -0.87
CHD4-201ENST00000357008 KRTAP10-11P60412 298 aa9.6□□□□□ -0.87
CHD4-201ENST00000357008 APLNQ9ULZ1 77 aa9.59□□□□□ -0.87
CHD4-201ENST00000357008 CDC42SE1Q9NRR8 79 aa9.59□□□□□ -0.87
CHD4-201ENST00000357008 LINC00304Q8N9R0 145 aa9.58□□□□□ -0.88
CHD4-201ENST00000357008 OCR1Q9BZK8 76 aa9.57□□□□□ -0.88
CHD4-201ENST00000357008 WWC2-AS2Q96NR7 200 aa9.56□□□□□ -0.88
CHD4-201ENST00000357008 K7EIL1 84 aa9.56□□□□□ -0.88
CHD4-201ENST00000357008 SPRR4Q96PI1 79 aa9.56□□□□□ -0.88
CHD4-201ENST00000357008 ZNF575Q86XF7 245 aa9.55□□□□□ -0.88
CHD4-201ENST00000357008 A0A087WTM6 91 aa9.55□□□□□ -0.88
CHD4-201ENST00000357008 Q1T7F1 81 aa9.54□□□□□ -0.88
CHD4-201ENST00000357008 IGLV5-37A0A075B6J1 123 aa9.54□□□□□ -0.88
CHD4-201ENST00000357008 FAM104AQ969W3 186 aa9.54□□□□□ -0.88
CHD4-201ENST00000357008 CNBPP62633 177 aaKnown RBP9.54□□□□□ -0.88
CHD4-201ENST00000357008 ANAPC11Q9NYG5 84 aa9.53□□□□□ -0.88
CHD4-201ENST00000357008 KRTAP10-3P60369 221 aa9.52□□□□□ -0.88
CHD4-201ENST00000357008 IGLV7-43P04211 117 aa9.52□□□□□ -0.89
CHD4-201ENST00000357008 WIPF1O43516 503 aa9.52□□□□□ -0.89
CHD4-201ENST00000357008 PSORS1C2Q9UIG4 136 aa9.51□□□□□ -0.89
CHD4-201ENST00000357008 CASC10Q5T4H9 136 aa9.5□□□□□ -0.89
CHD4-201ENST00000357008 C9orf92A6NGG3 77 aa9.49□□□□□ -0.89
CHD4-201ENST00000357008 PRRC2CQ9Y520 2896 aaKnown RBP9.46□□□□□ -0.89
CHD4-201ENST00000357008 USP24Q9UPU5 2620 aa9.45□□□□□ -0.9
CHD4-201ENST00000357008 PRR26Q8N8Z3 221 aa9.44□□□□□ -0.9
CHD4-201ENST00000357008 IGLV7-46A0A075B6I9 117 aa9.42□□□□□ -0.9
CHD4-201ENST00000357008 Q8N1X5 172 aa9.42□□□□□ -0.9
CHD4-201ENST00000357008 EPG5Q9HCE0 2579 aa9.4□□□□□ -0.9
CHD4-201ENST00000357008 COX6B2Q6YFQ2 88 aa9.39□□□□□ -0.91
CHD4-201ENST00000357008 CR1P17927 2039 aa9.38□□□□□ -0.91
CHD4-201ENST00000357008 Q75L30 129 aa9.38□□□□□ -0.91
CHD4-201ENST00000357008 A0A0D9SG42 100 aa9.37□□□□□ -0.91
CHD4-201ENST00000357008 MGAM2Q2M2H8 2515 aa9.36□□□□□ -0.91
CHD4-201ENST00000357008 Q5XG85 94 aa9.36□□□□□ -0.91
CHD4-201ENST00000357008 J3QL48 77 aa9.34□□□□□ -0.91
CHD4-201ENST00000357008 RBM12B-AS1Q9P1G2 102 aa9.34□□□□□ -0.91
CHD4-201ENST00000357008 SMR3BP02814 79 aaPredicted RBP9.33□□□□□ -0.92
CHD4-201ENST00000357008 KRTAP1-3Q8IUG1 177 aa9.32□□□□□ -0.92
CHD4-201ENST00000357008 HRES1P13985 223 aa9.31□□□□□ -0.92
CHD4-201ENST00000357008 Q8N9P0 234 aaPredicted RBP9.31□□□□□ -0.92
CHD4-201ENST00000357008 LINC01558Q9Y6Z2 57 aa9.3□□□□□ -0.92
CHD4-201ENST00000357008 BPTFQ12830 3046 aa9.3□□□□□ -0.92
CHD4-201ENST00000357008 FP248Q71RG6 208 aaPredicted RBP9.3□□□□□ -0.92
CHD4-201ENST00000357008 FAM229BQ4G0N7 80 aa9.29□□□□□ -0.92
CHD4-201ENST00000357008 CYSTM1Q9H1C7 97 aa9.29□□□□□ -0.92
CHD4-201ENST00000357008 LINC01554Q52M75 96 aa9.28□□□□□ -0.92
CHD4-201ENST00000357008 KRTAP1-1Q07627 177 aa9.27□□□□□ -0.92
CHD4-201ENST00000357008 MMP24-AS1A0A0U1RRL7 71 aa9.27□□□□□ -0.93
CHD4-201ENST00000357008 A0A1B0GU33 70 aa9.27□□□□□ -0.93
CHD4-201ENST00000357008 SPRR1AP35321 89 aa9.24□□□□□ -0.93
CHD4-201ENST00000357008 Q8NDZ9 215 aa9.24□□□□□ -0.93
CHD4-201ENST00000357008 FLNBO75369 2602 aaKnown RBP9.24□□□□□ -0.93
CHD4-201ENST00000357008 LUZP6Q538Z0 58 aa9.23□□□□□ -0.93
CHD4-201ENST00000357008 HECTD1Q9ULT8 2610 aa9.22□□□□□ -0.93
CHD4-201ENST00000357008 GOLGB1Q14789 3259 aaKnown RBP9.22□□□□□ -0.93
CHD4-201ENST00000357008 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP9.2□□□□□ -0.94
CHD4-201ENST00000357008 Q5VV11 94 aa9.18□□□□□ -0.94
CHD4-201ENST00000357008 LINC00472Q9H8W2 130 aa9.15□□□□□ -0.94
CHD4-201ENST00000357008 FLNAP21333 2647 aaKnown RBP9.15□□□□□ -0.94
CHD4-201ENST00000357008 SPRR1BP22528 89 aa9.15□□□□□ -0.95
CHD4-201ENST00000357008 TNP2Q05952 138 aa9.15□□□□□ -0.95
CHD4-201ENST00000357008 ATRQ13535 2644 aa9.13□□□□□ -0.95
CHD4-201ENST00000357008 DNAH12Q6ZR08 3092 aa9.13□□□□□ -0.95
CHD4-201ENST00000357008 ZCCHC13Q8WW36 166 aaKnown RBP9.12□□□□□ -0.95
CHD4-201ENST00000357008 PRAC1Q96KF2 57 aa9.12□□□□□ -0.95
CHD4-201ENST00000357008 DMAC1Q96GE9 116 aa9.1□□□□□ -0.95
CHD4-201ENST00000357008 PLAC8Q9NZF1 115 aa9.1□□□□□ -0.95
CHD4-201ENST00000357008 Q5W150 140 aa9.09□□□□□ -0.95
CHD4-201ENST00000357008 Q6ZSA8 131 aa9.09□□□□□ -0.95
CHD4-201ENST00000357008 SPINK7P58062 85 aa9.09□□□□□ -0.96
CHD4-201ENST00000357008 OXTP01178 125 aa9.08□□□□□ -0.96
CHD4-201ENST00000357008 MAST4O15021 2626 aa9.07□□□□□ -0.96
CHD4-201ENST00000357008 ITPR3Q14573 2671 aa9.07□□□□□ -0.96
CHD4-201ENST00000357008 CAMK2N1Q7Z7J9 78 aa9.06□□□□□ -0.96
CHD4-201ENST00000357008 CSAG1Q6PB30 78 aa9.03□□□□□ -0.96
CHD4-201ENST00000357008 LINC00483Q53H64 154 aa9□□□□□ -0.97
CHD4-201ENST00000357008 H3BS24 57 aa8.99□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 9.5 ms