RNA–Protein interactions for RNA: ENST00000353479.9

COL17A1-201, Transcript of collagen type XVII alpha 1 chain, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene COL17A1, Length 5,734 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-201ENST00000353479 Q6ZQT0 140 aa9.83□□□□□ -0.84
COL17A1-201ENST00000353479 CDIP1Q9H305 208 aa9.83□□□□□ -0.84
COL17A1-201ENST00000353479 RPL37AP61513 92 aaKnown RBP9.82□□□□□ -0.84
COL17A1-201ENST00000353479 SMIM29Q86T20 159 aa9.81□□□□□ -0.84
COL17A1-201ENST00000353479 CASC10Q5T4H9 136 aa9.8□□□□□ -0.84
COL17A1-201ENST00000353479 KCNQ1DNQ9H478 68 aa9.8□□□□□ -0.84
COL17A1-201ENST00000353479 C9orf129Q5T035 196 aaKnown RBP9.79□□□□□ -0.84
COL17A1-201ENST00000353479 SZT2Q5T011 3432 aa9.79□□□□□ -0.84
COL17A1-201ENST00000353479 PLA2G1BP04054 148 aaKnown RBP9.79□□□□□ -0.84
COL17A1-201ENST00000353479 IGKV2D-30A0A075B6S6 120 aa9.79□□□□□ -0.84
COL17A1-201ENST00000353479 IGKV2-30P06310 120 aa9.79□□□□□ -0.84
COL17A1-201ENST00000353479 LOC110117498A0A087WWA1 95 aa9.79□□□□□ -0.84
COL17A1-201ENST00000353479 K7ERS5 55 aa9.79□□□□□ -0.84
COL17A1-201ENST00000353479 TMEM254Q8TBM7 123 aa9.78□□□□□ -0.84
COL17A1-201ENST00000353479 TEP1Q99973 2627 aaKnown RBP9.78□□□□□ -0.84
COL17A1-201ENST00000353479 SPINK1P00995 79 aa9.78□□□□□ -0.84
COL17A1-201ENST00000353479 TRBV7-7A0A0K0K1E9 115 aa9.77□□□□□ -0.84
COL17A1-201ENST00000353479 hDV103S1A0JD37 113 aa9.77□□□□□ -0.85
COL17A1-201ENST00000353479 C9orf163Q8N9P6 203 aa9.77□□□□□ -0.85
COL17A1-201ENST00000353479 A0A1B0GW54 56 aa9.76□□□□□ -0.85
COL17A1-201ENST00000353479 IGSF10Q6WRI0 2623 aa9.76□□□□□ -0.85
COL17A1-201ENST00000353479 C1orf64Q8NEQ6 169 aa9.75□□□□□ -0.85
COL17A1-201ENST00000353479 LINC00528Q8N1L1 170 aa9.74□□□□□ -0.85
COL17A1-201ENST00000353479 A6NED7 52 aa9.74□□□□□ -0.85
COL17A1-201ENST00000353479 ZNF575Q86XF7 245 aa9.74□□□□□ -0.85
COL17A1-201ENST00000353479 VPS13AQ96RL7 3174 aa9.73□□□□□ -0.85
COL17A1-201ENST00000353479 TLX1NBP0CAT3 122 aa9.72□□□□□ -0.85
COL17A1-201ENST00000353479 SMR3BP02814 79 aaPredicted RBP9.72□□□□□ -0.85
COL17A1-201ENST00000353479 LINC00313P59037 77 aa9.7□□□□□ -0.86
COL17A1-201ENST00000353479 WIPF1O43516 503 aa9.7□□□□□ -0.86
COL17A1-201ENST00000353479 TRBV7-4A0A0J9YYF1 115 aa9.69□□□□□ -0.86
COL17A1-201ENST00000353479 A0A1W2PNN7 141 aa9.69□□□□□ -0.86
COL17A1-201ENST00000353479 ZNF861PO60384 105 aa9.69□□□□□ -0.86
COL17A1-201ENST00000353479 TP53AIP1Q9HCN2 124 aa9.69□□□□□ -0.86
COL17A1-201ENST00000353479 J3QL48 77 aa9.67□□□□□ -0.86
COL17A1-201ENST00000353479 SMIM26A0A096LP01 95 aa9.67□□□□□ -0.86
COL17A1-201ENST00000353479 CNBPP62633 177 aaKnown RBP9.67□□□□□ -0.86
COL17A1-201ENST00000353479 PLA2G2DQ9UNK4 145 aa9.67□□□□□ -0.86
COL17A1-201ENST00000353479 TEX15Q9BXT5 2789 aa9.66□□□□□ -0.86
COL17A1-201ENST00000353479 LINC00336Q6ZUF6 198 aa9.65□□□□□ -0.86
COL17A1-201ENST00000353479 UNC79Q9P2D8 2635 aa9.65□□□□□ -0.87
COL17A1-201ENST00000353479 IGFL1Q6UW32 110 aa9.64□□□□□ -0.87
COL17A1-201ENST00000353479 Q96NJ1 140 aa9.64□□□□□ -0.87
COL17A1-201ENST00000353479 C7orf65Q6ZTY9 151 aa9.64□□□□□ -0.87
COL17A1-201ENST00000353479 ANAPC11Q9NYG5 84 aa9.63□□□□□ -0.87
COL17A1-201ENST00000353479 Q8N377 158 aa9.63□□□□□ -0.87
COL17A1-201ENST00000353479 PSORS1C2Q9UIG4 136 aa9.63□□□□□ -0.87
COL17A1-201ENST00000353479 MAP1AP78559 2803 aaPredicted RBP9.62□□□□□ -0.87
COL17A1-201ENST00000353479 A0A0G2JQZ4 141 aa9.61□□□□□ -0.87
COL17A1-201ENST00000353479 IGLV7-43P04211 117 aa9.6□□□□□ -0.87
COL17A1-201ENST00000353479 TNP2Q05952 138 aa9.6□□□□□ -0.87
COL17A1-201ENST00000353479 A8MWP4 228 aa9.6□□□□□ -0.87
COL17A1-201ENST00000353479 K7EQZ3 153 aa9.59□□□□□ -0.87
COL17A1-201ENST00000353479 CHD6Q8TD26 2715 aa9.59□□□□□ -0.87
COL17A1-201ENST00000353479 LINC00304Q8N9R0 145 aa9.59□□□□□ -0.87
COL17A1-201ENST00000353479 LAMA1P25391 3075 aa9.58□□□□□ -0.88
COL17A1-201ENST00000353479 COL6A5A8TX70 2615 aa9.57□□□□□ -0.88
COL17A1-201ENST00000353479 BAHCC1Q9P281 2608 aa9.57□□□□□ -0.88
COL17A1-201ENST00000353479 TRAV22A0A0B4J277 110 aa9.57□□□□□ -0.88
COL17A1-201ENST00000353479 ERC2-IT1O76042 136 aa9.57□□□□□ -0.88
COL17A1-201ENST00000353479 SSBP3-AS1Q7Z2R9 100 aa9.57□□□□□ -0.88
COL17A1-201ENST00000353479 SETXQ7Z333 2677 aaKnown RBP9.56□□□□□ -0.88
COL17A1-201ENST00000353479 CELSR3Q9NYQ7 3312 aa9.56□□□□□ -0.88
COL17A1-201ENST00000353479 PSPHP1O15172 72 aa9.55□□□□□ -0.88
COL17A1-201ENST00000353479 ATP11AUNQ6ZP68 121 aa9.55□□□□□ -0.88
COL17A1-201ENST00000353479 C8orf87E5RJ46 101 aa9.54□□□□□ -0.88
COL17A1-201ENST00000353479 PMAIP1Q13794 54 aa9.54□□□□□ -0.88
COL17A1-201ENST00000353479 VCANP13611 3396 aa9.54□□□□□ -0.88
COL17A1-201ENST00000353479 FAM104AQ969W3 186 aa9.54□□□□□ -0.88
COL17A1-201ENST00000353479 STAB1Q9NY15 2570 aa9.54□□□□□ -0.88
COL17A1-201ENST00000353479 MRPL34Q9BQ48 92 aaKnown RBP9.52□□□□□ -0.88
COL17A1-201ENST00000353479 DSCR10P59022 87 aa9.52□□□□□ -0.89
COL17A1-201ENST00000353479 SPRR4Q96PI1 79 aa9.52□□□□□ -0.89
COL17A1-201ENST00000353479 COL6A3P12111 3177 aa9.52□□□□□ -0.89
COL17A1-201ENST00000353479 SPAG11AQ6PDA7 123 aa9.51□□□□□ -0.89
COL17A1-201ENST00000353479 ACYP2P14621 99 aa9.51□□□□□ -0.89
COL17A1-201ENST00000353479 FRYQ5TBA9 3013 aa9.5□□□□□ -0.89
COL17A1-201ENST00000353479 H3BPC8 53 aa9.5□□□□□ -0.89
COL17A1-201ENST00000353479 DNAH14Q0VDD8 3507 aa9.49□□□□□ -0.89
COL17A1-201ENST00000353479 IGLV5-37A0A075B6J1 123 aa9.49□□□□□ -0.89
COL17A1-201ENST00000353479 TNRC18O15417 2968 aaPredicted RBP9.49□□□□□ -0.89
COL17A1-201ENST00000353479 C9orf92A6NGG3 77 aa9.48□□□□□ -0.89
COL17A1-201ENST00000353479 OBSCN-AS1Q96MR7 158 aa9.47□□□□□ -0.89
COL17A1-201ENST00000353479 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP9.47□□□□□ -0.89
COL17A1-201ENST00000353479 C8orf17Q9NRJ1 99 aa9.47□□□□□ -0.89
COL17A1-201ENST00000353479 PRR15Q8IV56 129 aa9.46□□□□□ -0.89
COL17A1-201ENST00000353479 A0A1B0GVX0 72 aa9.45□□□□□ -0.9
COL17A1-201ENST00000353479 LOC101927531A0A1B0GV80 90 aa9.44□□□□□ -0.9
COL17A1-201ENST00000353479 FRYLO94915 3013 aa9.44□□□□□ -0.9
COL17A1-201ENST00000353479 NOTCH1P46531 2555 aa9.43□□□□□ -0.9
COL17A1-201ENST00000353479 A0A1W2PNM2 257 aa9.42□□□□□ -0.9
COL17A1-201ENST00000353479 A0A1B0GU69 56 aa9.41□□□□□ -0.9
COL17A1-201ENST00000353479 FLNCQ14315 2725 aa9.41□□□□□ -0.9
COL17A1-201ENST00000353479 GCN1Q92616 2671 aaKnown RBP9.4□□□□□ -0.9
COL17A1-201ENST00000353479 ATMQ13315 3056 aa9.4□□□□□ -0.9
COL17A1-201ENST00000353479 BOD1L1Q8NFC6 3051 aa9.37□□□□□ -0.91
COL17A1-201ENST00000353479 UBR5O95071 2799 aaPredicted RBP9.36□□□□□ -0.91
COL17A1-201ENST00000353479 SPTBN5Q9NRC6 3674 aaKnown RBP9.36□□□□□ -0.91
COL17A1-201ENST00000353479 DMXL2Q8TDJ6 3036 aa9.36□□□□□ -0.91
COL17A1-201ENST00000353479 KRTAP1-5Q9BYS1 174 aa9.35□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 210.4 ms