RNA–Protein interactions for RNA: ENST00000341472.9

SYNE2-201, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best) BASIC

Gene SYNE2, Length 1,132 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-201ENST00000341472 Q6ZVH6 145 aa11.79□□□□□ -0.52
SYNE2-201ENST00000341472 HIGD1BQ9P298 99 aa11.79□□□□□ -0.52
SYNE2-201ENST00000341472 TSTD3H0UI37 97 aa11.77□□□□□ -0.53
SYNE2-201ENST00000341472 NCR3O14931 201 aa11.77□□□□□ -0.53
SYNE2-201ENST00000341472 LITAFQ99732 161 aa11.77□□□□□ -0.53
SYNE2-201ENST00000341472 MIEN1Q9BRT3 115 aa11.77□□□□□ -0.53
SYNE2-201ENST00000341472 PRYO14603 147 aa11.76□□□□□ -0.53
SYNE2-201ENST00000341472 LINC00304Q8N9R0 145 aa11.76□□□□□ -0.53
SYNE2-201ENST00000341472 COPS9Q8WXC6 57 aa11.76□□□□□ -0.53
SYNE2-201ENST00000341472 SPANXDQ9BXN6 97 aa11.76□□□□□ -0.53
SYNE2-201ENST00000341472 PRO1933Q9H354 126 aa11.76□□□□□ -0.53
SYNE2-201ENST00000341472 KCNQ1DNQ9H478 68 aa11.76□□□□□ -0.53
SYNE2-201ENST00000341472 SPANXB1Q9NS25 103 aaPredicted RBP11.76□□□□□ -0.53
SYNE2-201ENST00000341472 SPANXCQ9NY87 97 aa11.76□□□□□ -0.53
SYNE2-201ENST00000341472 ADAMTSL4-AS1Q5T5F5 129 aa11.75□□□□□ -0.53
SYNE2-201ENST00000341472 IFITM1P13164 125 aa11.74□□□□□ -0.53
SYNE2-201ENST00000341472 C2orf91Q6ZV80 131 aa11.73□□□□□ -0.53
SYNE2-201ENST00000341472 LINC00337Q8N6G1 96 aa11.73□□□□□ -0.53
SYNE2-201ENST00000341472 LOC107984156A0A0G2JMH3 177 aa11.72□□□□□ -0.53
SYNE2-201ENST00000341472 TRBV10-3A0A0K0K1G6 114 aa11.72□□□□□ -0.53
SYNE2-201ENST00000341472 SPRR1AP35321 89 aa11.72□□□□□ -0.53
SYNE2-201ENST00000341472 ARL17AQ8IVW1 177 aa11.72□□□□□ -0.53
SYNE2-201ENST00000341472 DAND5Q8N907 189 aa11.72□□□□□ -0.53
SYNE2-201ENST00000341472 SPRR4Q96PI1 79 aa11.72□□□□□ -0.53
SYNE2-201ENST00000341472 PPDPFQ9H3Y8 114 aa11.72□□□□□ -0.53
SYNE2-201ENST00000341472 ETDCA0A1B0GVM5 59 aa11.71□□□□□ -0.53
SYNE2-201ENST00000341472 HIST1H4GQ99525 98 aa11.71□□□□□ -0.53
SYNE2-201ENST00000341472 ZNF706Q9Y5V0 76 aaPredicted RBP11.71□□□□□ -0.53
SYNE2-201ENST00000341472 TAL2Q16559 108 aa11.7□□□□□ -0.54
SYNE2-201ENST00000341472 C3orf22Q8N5N4 141 aa11.7□□□□□ -0.54
SYNE2-201ENST00000341472 LINC00308Q8TCZ7 52 aa11.7□□□□□ -0.54
SYNE2-201ENST00000341472 SMCR5Q8TEV8 140 aa11.7□□□□□ -0.54
SYNE2-201ENST00000341472 TRBV10-2A0A0K0K1G8 114 aa11.68□□□□□ -0.54
SYNE2-201ENST00000341472 KRTAP4-16G5E9R7 235 aaPredicted RBP11.68□□□□□ -0.54
SYNE2-201ENST00000341472 CTAG1AP78358 180 aa11.68□□□□□ -0.54
SYNE2-201ENST00000341472 MUSTN1Q8IVN3 82 aa11.67□□□□□ -0.54
SYNE2-201ENST00000341472 DDTP30046 118 aa11.66□□□□□ -0.54
SYNE2-201ENST00000341472 NPC2P61916 151 aa11.66□□□□□ -0.54
SYNE2-201ENST00000341472 HSD52Q0P140 79 aa11.65□□□□□ -0.54
SYNE2-201ENST00000341472 SPAG11AQ6PDA7 123 aa11.65□□□□□ -0.54
SYNE2-201ENST00000341472 SOSTDC1Q6X4U4 206 aa11.65□□□□□ -0.54
SYNE2-201ENST00000341472 RETNLBQ9BQ08 111 aa11.65□□□□□ -0.54
SYNE2-201ENST00000341472 NDUFC2O95298 119 aa11.64□□□□□ -0.55
SYNE2-201ENST00000341472 B5MCH6 92 aa11.63□□□□□ -0.55
SYNE2-201ENST00000341472 C4orf48Q5BLP8 95 aa11.63□□□□□ -0.55
SYNE2-201ENST00000341472 S100A7L2Q5SY68 101 aa11.63□□□□□ -0.55
SYNE2-201ENST00000341472 CEND1Q8N111 149 aa11.62□□□□□ -0.55
SYNE2-201ENST00000341472 EIF4EBP3O60516 100 aaPredicted RBP11.61□□□□□ -0.55
SYNE2-201ENST00000341472 IGLV7-46A0A075B6I9 117 aa11.59□□□□□ -0.55
SYNE2-201ENST00000341472 TMEM238LA0A1B0GVL6 79 aa11.59□□□□□ -0.55
SYNE2-201ENST00000341472 A6NJY4 79 aa11.59□□□□□ -0.55
SYNE2-201ENST00000341472 IGLV6-57P01721 117 aa11.59□□□□□ -0.55
SYNE2-201ENST00000341472 GAGE2AQ6NT46 116 aa11.59□□□□□ -0.55
SYNE2-201ENST00000341472 A4D1N5 150 aa11.57□□□□□ -0.56
SYNE2-201ENST00000341472 M0R143 59 aa11.57□□□□□ -0.56
SYNE2-201ENST00000341472 ERC2-IT1O76042 136 aa11.57□□□□□ -0.56
SYNE2-201ENST00000341472 LINC00483Q53H64 154 aa11.57□□□□□ -0.56
SYNE2-201ENST00000341472 Q8NBF4 154 aa11.56□□□□□ -0.56
SYNE2-201ENST00000341472 TRAV23DV6A0A075B6W5 121 aa11.55□□□□□ -0.56
SYNE2-201ENST00000341472 Q6ZRX8 168 aa11.55□□□□□ -0.56
SYNE2-201ENST00000341472 Q9BRP9 147 aa11.55□□□□□ -0.56
SYNE2-201ENST00000341472 MUC2Q02817 5179 aa11.55□□□□□ -0.56
SYNE2-201ENST00000341472 TRAV13-2A0A0B4J235 113 aa11.53□□□□□ -0.56
SYNE2-201ENST00000341472 CDIP1Q9H305 208 aa11.53□□□□□ -0.56
SYNE2-201ENST00000341472 CBY1Q9Y3M2 126 aa11.53□□□□□ -0.56
SYNE2-201ENST00000341472 ZNF73O43830 326 aaPredicted RBP11.52□□□□□ -0.57
SYNE2-201ENST00000341472 FXYD2P54710 66 aa11.52□□□□□ -0.57
SYNE2-201ENST00000341472 HINT1P49773 126 aaPredicted RBP11.51□□□□□ -0.57
SYNE2-201ENST00000341472 TPRXLQ17RH7 258 aa11.51□□□□□ -0.57
SYNE2-201ENST00000341472 BVES-AS1Q5T3Y7 98 aa11.51□□□□□ -0.57
SYNE2-201ENST00000341472 SSBP3-AS1Q7Z2R9 100 aa11.51□□□□□ -0.57
SYNE2-201ENST00000341472 SPINK1P00995 79 aa11.5□□□□□ -0.57
SYNE2-201ENST00000341472 OR13C6PQ8NH95 151 aa11.5□□□□□ -0.57
SYNE2-201ENST00000341472 IGLV9-49A0A0B4J1Y8 123 aa11.49□□□□□ -0.57
SYNE2-201ENST00000341472 A0A0B4J2C4 111 aa11.49□□□□□ -0.57
SYNE2-201ENST00000341472 CFC1BP0CG36 223 aa11.49□□□□□ -0.57
SYNE2-201ENST00000341472 CFC1P0CG37 223 aa11.49□□□□□ -0.57
SYNE2-201ENST00000341472 RAB37Q96AX2 223 aa11.49□□□□□ -0.57
SYNE2-201ENST00000341472 A6NDN8 102 aa11.48□□□□□ -0.57
SYNE2-201ENST00000341472 PCP4L1A6NKN8 68 aa11.48□□□□□ -0.57
SYNE2-201ENST00000341472 MOBPQ13875 183 aa11.48□□□□□ -0.57
SYNE2-201ENST00000341472 FP248Q71RG6 208 aaPredicted RBP11.47□□□□□ -0.57
SYNE2-201ENST00000341472 NHP2Q9NX24 153 aaKnown RBP11.47□□□□□ -0.57
SYNE2-201ENST00000341472 A0A1B0GWB2 263 aa11.45□□□□□ -0.58
SYNE2-201ENST00000341472 PRO1854Q9UHT4 67 aa11.45□□□□□ -0.58
SYNE2-201ENST00000341472 A0A0U1RQV1 116 aa11.43□□□□□ -0.58
SYNE2-201ENST00000341472 ST20-AS1Q8NBB2 130 aa11.42□□□□□ -0.58
SYNE2-201ENST00000341472 MUC17Q685J3 4493 aa11.41□□□□□ -0.58
SYNE2-201ENST00000341472 BATFQ16520 125 aa11.41□□□□□ -0.58
SYNE2-201ENST00000341472 RPS29P62273 56 aaKnown RBP11.39□□□□□ -0.59
SYNE2-201ENST00000341472 C9orf153Q5TBE3 101 aa11.39□□□□□ -0.59
SYNE2-201ENST00000341472 DHRS4-AS1Q9P1J3 65 aa11.39□□□□□ -0.59
SYNE2-201ENST00000341472 K7ERJ3 54 aa11.36□□□□□ -0.59
SYNE2-201ENST00000341472 SLC25A20O43772 301 aa11.36□□□□□ -0.59
SYNE2-201ENST00000341472 COX7BP24311 80 aa11.36□□□□□ -0.59
SYNE2-201ENST00000341472 SMIM11BQ8TCY0 68 aa11.36□□□□□ -0.59
SYNE2-201ENST00000341472 SNHG12Q9BXW3 62 aa11.36□□□□□ -0.59
SYNE2-201ENST00000341472 H7C2G1 150 aa11.35□□□□□ -0.59
SYNE2-201ENST00000341472 Q1RN00 199 aa11.35□□□□□ -0.59
SYNE2-201ENST00000341472 KRTAP13-3Q3SY46 172 aa11.35□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 92.6 ms