RNA–Protein interactions for RNA: ENST00000339701.7

CSMD3-202, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 1 (best)

Gene CSMD3, Length 10,773 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-202ENST00000339701 LINC00483Q53H64 154 aa2.27□□□□□ -2.05
CSMD3-202ENST00000339701 C18orf65Q6ZTR6 163 aa2.27□□□□□ -2.05
CSMD3-202ENST00000339701 TM2D3Q9BRN9 247 aa2.27□□□□□ -2.05
CSMD3-202ENST00000339701 FAM104AQ969W3 186 aa2.27□□□□□ -2.05
CSMD3-202ENST00000339701 TLX1NBP0CAT3 122 aa2.27□□□□□ -2.05
CSMD3-202ENST00000339701 A0A087WSZ3 146 aa2.27□□□□□ -2.05
CSMD3-202ENST00000339701 SPACA4Q8TDM5 124 aa2.27□□□□□ -2.05
CSMD3-202ENST00000339701 WFDC13Q8IUB5 93 aa2.27□□□□□ -2.05
CSMD3-202ENST00000339701 IGKV2-28A0A075B6P5 120 aa2.27□□□□□ -2.05
CSMD3-202ENST00000339701 IGKV2D-28P01615 120 aa2.27□□□□□ -2.05
CSMD3-202ENST00000339701 IGLV6-57P01721 117 aa2.27□□□□□ -2.05
CSMD3-202ENST00000339701 SPINK1P00995 79 aa2.27□□□□□ -2.05
CSMD3-202ENST00000339701 COX6A2Q02221 97 aa2.27□□□□□ -2.05
CSMD3-202ENST00000339701 PRR34Q9NV39 138 aa2.27□□□□□ -2.05
CSMD3-202ENST00000339701 PSORS1C2Q9UIG4 136 aa2.27□□□□□ -2.05
CSMD3-202ENST00000339701 A0A1W2PPR1 153 aa2.26□□□□□ -2.05
CSMD3-202ENST00000339701 LINC00315P59091 139 aa2.26□□□□□ -2.05
CSMD3-202ENST00000339701 RNASE13Q5GAN3 156 aaKnown RBP2.26□□□□□ -2.05
CSMD3-202ENST00000339701 SLPIP03973 132 aa2.26□□□□□ -2.05
CSMD3-202ENST00000339701 MAP1AP78559 2803 aaPredicted RBP2.26□□□□□ -2.05
CSMD3-202ENST00000339701 SMR3BP02814 79 aaPredicted RBP2.26□□□□□ -2.05
CSMD3-202ENST00000339701 MRPL34Q9BQ48 92 aaKnown RBP2.26□□□□□ -2.05
CSMD3-202ENST00000339701 KCNQ1DNQ9H478 68 aa2.26□□□□□ -2.05
CSMD3-202ENST00000339701 LCE6AA0A183 80 aa2.25□□□□□ -2.05
CSMD3-202ENST00000339701 LINC00528Q8N1L1 170 aa2.25□□□□□ -2.05
CSMD3-202ENST00000339701 CRIP1P50238 77 aa2.25□□□□□ -2.05
CSMD3-202ENST00000339701 FHL2Q14192 279 aa2.25□□□□□ -2.05
CSMD3-202ENST00000339701 VCANP13611 3396 aa2.25□□□□□ -2.05
CSMD3-202ENST00000339701 DNAH10OSP0CZ25 163 aa2.25□□□□□ -2.05
CSMD3-202ENST00000339701 LINC00304Q8N9R0 145 aa2.25□□□□□ -2.05
CSMD3-202ENST00000339701 A0A0C4DFX4 3053 aa2.25□□□□□ -2.05
CSMD3-202ENST00000339701 SEC61BP60468 96 aaKnown RBP2.25□□□□□ -2.05
CSMD3-202ENST00000339701 IGSF10Q6WRI0 2623 aa2.25□□□□□ -2.05
CSMD3-202ENST00000339701 CHTF8P0CG12 524 aa2.25□□□□□ -2.05
CSMD3-202ENST00000339701 MIR22HGQ0VDD5 57 aa2.24□□□□□ -2.05
CSMD3-202ENST00000339701 FAM19A4Q96LR4 140 aa2.24□□□□□ -2.05
CSMD3-202ENST00000339701 C10orf99Q6UWK7 81 aa2.24□□□□□ -2.05
CSMD3-202ENST00000339701 LINC01554Q52M75 96 aa2.24□□□□□ -2.05
CSMD3-202ENST00000339701 Q6ZPA2 131 aa2.24□□□□□ -2.05
CSMD3-202ENST00000339701 IGHV6-1A0A0B4J1U7 121 aa2.24□□□□□ -2.05
CSMD3-202ENST00000339701 GDF5OSQ5U4N7 250 aa2.24□□□□□ -2.05
CSMD3-202ENST00000339701 SMCR5Q8TEV8 140 aa2.24□□□□□ -2.05
CSMD3-202ENST00000339701 TRANK1O15050 2925 aa2.24□□□□□ -2.05
CSMD3-202ENST00000339701 IGLV5-48A0A075B6I7 105 aa2.24□□□□□ -2.05
CSMD3-202ENST00000339701 Q6ZSA8 131 aa2.24□□□□□ -2.05
CSMD3-202ENST00000339701 PRO0461Q9UI25 63 aa2.24□□□□□ -2.05
CSMD3-202ENST00000339701 HRES1P13985 223 aa2.24□□□□□ -2.05
CSMD3-202ENST00000339701 Q6ZRU5 148 aa2.24□□□□□ -2.05
CSMD3-202ENST00000339701 ODF3L2Q3SX64 289 aa2.23□□□□□ -2.05
CSMD3-202ENST00000339701 FAM229BQ4G0N7 80 aa2.23□□□□□ -2.05
CSMD3-202ENST00000339701 H7BZZ5 65 aa2.23□□□□□ -2.05
CSMD3-202ENST00000339701 PSPHP1O15172 72 aa2.23□□□□□ -2.05
CSMD3-202ENST00000339701 RPS29P62273 56 aaKnown RBP2.23□□□□□ -2.05
CSMD3-202ENST00000339701 C15orf56Q8N910 161 aa2.23□□□□□ -2.05
CSMD3-202ENST00000339701 CRYBG3Q68DQ2 2970 aa2.23□□□□□ -2.05
CSMD3-202ENST00000339701 LINC00167Q96N53 147 aa2.23□□□□□ -2.05
CSMD3-202ENST00000339701 SPINT4Q6UDR6 99 aa2.22□□□□□ -2.05
CSMD3-202ENST00000339701 UNQ6190/PRO20217Q6UXQ8 127 aa2.22□□□□□ -2.05
CSMD3-202ENST00000339701 Q75L30 129 aa2.22□□□□□ -2.05
CSMD3-202ENST00000339701 TTTY13Q9BZ97 58 aa2.22□□□□□ -2.05
CSMD3-202ENST00000339701 MKI67P46013 3256 aaKnown RBP2.22□□□□□ -2.05
CSMD3-202ENST00000339701 IGLV5-37A0A075B6J1 123 aa2.22□□□□□ -2.05
CSMD3-202ENST00000339701 IGLV1-50A0A075B6I6 118 aa2.22□□□□□ -2.05
CSMD3-202ENST00000339701 PRUNE2Q8WUY3 3088 aa2.21□□□□□ -2.06
CSMD3-202ENST00000339701 A0A1B0GVX0 72 aa2.21□□□□□ -2.06
CSMD3-202ENST00000339701 NOTCH2NLQ7Z3S9 236 aa2.21□□□□□ -2.06
CSMD3-202ENST00000339701 SPRR4Q96PI1 79 aa2.21□□□□□ -2.06
CSMD3-202ENST00000339701 A0A096LNJ9 63 aa2.21□□□□□ -2.06
CSMD3-202ENST00000339701 Q5VSD8 79 aa2.21□□□□□ -2.06
CSMD3-202ENST00000339701 SMIM29Q86T20 159 aa2.21□□□□□ -2.06
CSMD3-202ENST00000339701 COA5Q86WW8 74 aa2.21□□□□□ -2.06
CSMD3-202ENST00000339701 SOSTDC1Q6X4U4 206 aa2.21□□□□□ -2.06
CSMD3-202ENST00000339701 C22orf24Q9Y442 160 aa2.21□□□□□ -2.06
CSMD3-202ENST00000339701 LINC00588Q9Y4M8 146 aa2.21□□□□□ -2.06
CSMD3-202ENST00000339701 A0A087WTM6 91 aa2.2□□□□□ -2.06
CSMD3-202ENST00000339701 CNBPP62633 177 aaKnown RBP2.2□□□□□ -2.06
CSMD3-202ENST00000339701 A0A087WYN8 130 aa2.2□□□□□ -2.06
CSMD3-202ENST00000339701 LINC00612Q8N6U2 182 aa2.2□□□□□ -2.06
CSMD3-202ENST00000339701 LAMA3Q16787 3333 aa2.2□□□□□ -2.06
CSMD3-202ENST00000339701 IGLV7-46A0A075B6I9 117 aa2.2□□□□□ -2.06
CSMD3-202ENST00000339701 KRTAP10-11P60412 298 aa2.2□□□□□ -2.06
CSMD3-202ENST00000339701 LINC00310P59036 64 aa2.2□□□□□ -2.06
CSMD3-202ENST00000339701 UBR5O95071 2799 aaPredicted RBP2.19□□□□□ -2.06
CSMD3-202ENST00000339701 ZNF861PO60384 105 aa2.19□□□□□ -2.06
CSMD3-202ENST00000339701 BRCA2P51587 3418 aa2.19□□□□□ -2.06
CSMD3-202ENST00000339701 FLNCQ14315 2725 aa2.19□□□□□ -2.06
CSMD3-202ENST00000339701 RANBP2P49792 3224 aaKnown RBP2.19□□□□□ -2.06
CSMD3-202ENST00000339701 A0A087WVE0 104 aa2.19□□□□□ -2.06
CSMD3-202ENST00000339701 OBSCN-AS1Q96MR7 158 aa2.19□□□□□ -2.06
CSMD3-202ENST00000339701 IGKV2D-30A0A075B6S6 120 aa2.19□□□□□ -2.06
CSMD3-202ENST00000339701 IGLV7-43P04211 117 aa2.19□□□□□ -2.06
CSMD3-202ENST00000339701 IGKV2-30P06310 120 aa2.19□□□□□ -2.06
CSMD3-202ENST00000339701 PHF5AQ7RTV0 110 aaKnown RBP2.19□□□□□ -2.06
CSMD3-202ENST00000339701 Q96NJ1 140 aa2.18□□□□□ -2.06
CSMD3-202ENST00000339701 URB1-AS1Q96HZ7 61 aa2.18□□□□□ -2.06
CSMD3-202ENST00000339701 CFAP54Q96N23 3096 aa2.18□□□□□ -2.06
CSMD3-202ENST00000339701 C19orf73Q9NVV2 129 aa2.18□□□□□ -2.06
CSMD3-202ENST00000339701 CSNK1G2-AS1Q8NCQ2 148 aa2.18□□□□□ -2.06
CSMD3-202ENST00000339701 C11orf21Q9P2W6 132 aa2.17□□□□□ -2.06
CSMD3-202ENST00000339701 C8orf17Q9NRJ1 99 aa2.17□□□□□ -2.06
Retrieved 100 of 20,778 RNA–protein pairs in 99 ms