RNA–Protein interactions for RNA: ENST00000339394.6

SDC3-202, Transcript of syndecan 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC3, Length 1,580 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-202ENST00000339394 A6NJY4 79 aa13.55□□□□□ -0.24
SDC3-202ENST00000339394 CTAG1AP78358 180 aa13.55□□□□□ -0.24
SDC3-202ENST00000339394 CBY1Q9Y3M2 126 aa13.55□□□□□ -0.24
SDC3-202ENST00000339394 KRTAP4-16G5E9R7 235 aaPredicted RBP13.54□□□□□ -0.24
SDC3-202ENST00000339394 ZNF73O43830 326 aaPredicted RBP13.54□□□□□ -0.24
SDC3-202ENST00000339394 FAM19A1Q7Z5A9 133 aa13.54□□□□□ -0.24
SDC3-202ENST00000339394 ZNF861PO60384 105 aa13.53□□□□□ -0.24
SDC3-202ENST00000339394 UBE2AP49459 152 aa13.52□□□□□ -0.25
SDC3-202ENST00000339394 A0A0B4J2C4 111 aa13.51□□□□□ -0.25
SDC3-202ENST00000339394 PRLHP81277 87 aa13.51□□□□□ -0.25
SDC3-202ENST00000339394 KRTAP13-1Q8IUC0 172 aa13.51□□□□□ -0.25
SDC3-202ENST00000339394 RAB37Q96AX2 223 aa13.51□□□□□ -0.25
SDC3-202ENST00000339394 ABCA13Q86UQ4 5058 aa13.51□□□□□ -0.25
SDC3-202ENST00000339394 ETDCA0A1B0GVM5 59 aa13.5□□□□□ -0.25
SDC3-202ENST00000339394 RPL13AP40429 203 aaKnown RBP13.49□□□□□ -0.25
SDC3-202ENST00000339394 RPL28P46779 137 aaKnown RBP13.49□□□□□ -0.25
SDC3-202ENST00000339394 BVES-AS1Q5T3Y7 98 aa13.49□□□□□ -0.25
SDC3-202ENST00000339394 SPINK6Q6UWN8 80 aa13.49□□□□□ -0.25
SDC3-202ENST00000339394 SMIM11BQ8TCY0 68 aa13.49□□□□□ -0.25
SDC3-202ENST00000339394 NHP2Q9NX24 153 aaKnown RBP13.49□□□□□ -0.25
SDC3-202ENST00000339394 C6orf99Q4VX62 202 aa13.48□□□□□ -0.25
SDC3-202ENST00000339394 DIRC1Q969H9 104 aa13.48□□□□□ -0.25
SDC3-202ENST00000339394 B5MCH6 92 aa13.47□□□□□ -0.25
SDC3-202ENST00000339394 HINT1P49773 126 aaPredicted RBP13.47□□□□□ -0.25
SDC3-202ENST00000339394 H0Y9J4 135 aa13.46□□□□□ -0.25
SDC3-202ENST00000339394 PRO1854Q9UHT4 67 aa13.45□□□□□ -0.26
SDC3-202ENST00000339394 PKHD1L1Q86WI1 4243 aa13.45□□□□□ -0.26
SDC3-202ENST00000339394 INAFM2P0DMQ5 153 aa13.45□□□□□ -0.26
SDC3-202ENST00000339394 A0A1B0GWB2 263 aa13.44□□□□□ -0.26
SDC3-202ENST00000339394 H7C2G1 150 aa13.44□□□□□ -0.26
SDC3-202ENST00000339394 K7ERJ3 54 aa13.44□□□□□ -0.26
SDC3-202ENST00000339394 M0R143 59 aa13.44□□□□□ -0.26
SDC3-202ENST00000339394 Q6ZRX8 168 aa13.44□□□□□ -0.26
SDC3-202ENST00000339394 HIGD2AQ9BW72 106 aa13.42□□□□□ -0.26
SDC3-202ENST00000339394 MYCBP2O75592 4640 aa13.41□□□□□ -0.26
SDC3-202ENST00000339394 ELOF1P60002 83 aaKnown RBP13.41□□□□□ -0.26
SDC3-202ENST00000339394 Q9BRP9 147 aa13.41□□□□□ -0.26
SDC3-202ENST00000339394 TRBV7-6A0A0J9YX20 115 aa13.4□□□□□ -0.26
SDC3-202ENST00000339394 COX7BP24311 80 aa13.39□□□□□ -0.27
SDC3-202ENST00000339394 SMCR5Q8TEV8 140 aa13.39□□□□□ -0.27
SDC3-202ENST00000339394 LRP1Q07954 4544 aaKnown RBP13.38□□□□□ -0.27
SDC3-202ENST00000339394 Q1RN00 199 aa13.37□□□□□ -0.27
SDC3-202ENST00000339394 VAMP3Q15836 100 aa13.35□□□□□ -0.27
SDC3-202ENST00000339394 ERC2-IT1O76042 136 aa13.34□□□□□ -0.27
SDC3-202ENST00000339394 FLG2Q5D862 2391 aaPredicted RBP13.34□□□□□ -0.27
SDC3-202ENST00000339394 BATFQ16520 125 aa13.33□□□□□ -0.28
SDC3-202ENST00000339394 FAT3Q8TDW7 4589 aa13.33□□□□□ -0.28
SDC3-202ENST00000339394 PCLOQ9Y6V0 5065 aa13.33□□□□□ -0.28
SDC3-202ENST00000339394 DHRS4-AS1Q9P1J3 65 aa13.32□□□□□ -0.28
SDC3-202ENST00000339394 TSPAN13O95857 204 aa13.31□□□□□ -0.28
SDC3-202ENST00000339394 PCP4L1A6NKN8 68 aa13.29□□□□□ -0.28
SDC3-202ENST00000339394 KRTAP1-4P0C5Y4 121 aa13.29□□□□□ -0.28
SDC3-202ENST00000339394 TRIAP1O43715 76 aa13.28□□□□□ -0.28
SDC3-202ENST00000339394 LINC00575Q6W349 94 aa13.27□□□□□ -0.29
SDC3-202ENST00000339394 SPRR4Q96PI1 79 aa13.26□□□□□ -0.29
SDC3-202ENST00000339394 PSMB2P49721 201 aa13.25□□□□□ -0.29
SDC3-202ENST00000339394 ANAPC11Q9NYG5 84 aa13.25□□□□□ -0.29
SDC3-202ENST00000339394 H0YGX0 51 aa13.24□□□□□ -0.29
SDC3-202ENST00000339394 ST20-AS1Q8NBB2 130 aa13.24□□□□□ -0.29
SDC3-202ENST00000339394 ZNF706Q9Y5V0 76 aaPredicted RBP13.24□□□□□ -0.29
SDC3-202ENST00000339394 SLC25A20O43772 301 aa13.24□□□□□ -0.29
SDC3-202ENST00000339394 LINC01600Q96MT4 127 aa13.23□□□□□ -0.29
SDC3-202ENST00000339394 SNHG12Q9BXW3 62 aa13.23□□□□□ -0.29
SDC3-202ENST00000339394 hADV29S1A0JD25 119 aa13.21□□□□□ -0.29
SDC3-202ENST00000339394 OXTP01178 125 aa13.21□□□□□ -0.29
SDC3-202ENST00000339394 GAGE2AQ6NT46 116 aa13.21□□□□□ -0.29
SDC3-202ENST00000339394 COX6CP09669 75 aa13.2□□□□□ -0.3
SDC3-202ENST00000339394 FAM218AQ96MZ4 157 aa13.2□□□□□ -0.3
SDC3-202ENST00000339394 KRTAP29-1A8MX34 341 aaPredicted RBP13.19□□□□□ -0.3
SDC3-202ENST00000339394 A0A087X002 238 aa13.18□□□□□ -0.3
SDC3-202ENST00000339394 LINC00483Q53H64 154 aa13.17□□□□□ -0.3
SDC3-202ENST00000339394 PRR26Q8N8Z3 221 aa13.17□□□□□ -0.3
SDC3-202ENST00000339394 NAA38Q9BRA0 125 aaKnown RBP13.17□□□□□ -0.3
SDC3-202ENST00000339394 TNXBP22105 4242 aa13.17□□□□□ -0.3
SDC3-202ENST00000339394 SCGB1C2P0DMR2 95 aa13.16□□□□□ -0.3
SDC3-202ENST00000339394 FAM229BQ4G0N7 80 aa13.16□□□□□ -0.3
SDC3-202ENST00000339394 CLEC2BQ92478 149 aa13.16□□□□□ -0.3
SDC3-202ENST00000339394 DEFB105AQ8NG35 78 aa13.15□□□□□ -0.3
SDC3-202ENST00000339394 CRYGAP11844 174 aa13.15□□□□□ -0.3
SDC3-202ENST00000339394 Q6ZQY7 126 aa13.15□□□□□ -0.3
SDC3-202ENST00000339394 TAX1BP3O14907 124 aa13.13□□□□□ -0.31
SDC3-202ENST00000339394 SNCGO76070 127 aa13.13□□□□□ -0.31
SDC3-202ENST00000339394 IGLV5-48A0A075B6I7 105 aa13.12□□□□□ -0.31
SDC3-202ENST00000339394 A0A1B0GX51 115 aa13.12□□□□□ -0.31
SDC3-202ENST00000339394 SPRR1BP22528 89 aa13.12□□□□□ -0.31
SDC3-202ENST00000339394 LINC01547P58512 204 aaPredicted RBP13.12□□□□□ -0.31
SDC3-202ENST00000339394 MT1HL1P0DM35 61 aa13.11□□□□□ -0.31
SDC3-202ENST00000339394 KRTAP10-8P60410 259 aa13.11□□□□□ -0.31
SDC3-202ENST00000339394 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP13.11□□□□□ -0.31
SDC3-202ENST00000339394 TEX49A0A1B0GTD5 131 aa13.11□□□□□ -0.31
SDC3-202ENST00000339394 H3BUT2 72 aa13.11□□□□□ -0.31
SDC3-202ENST00000339394 KRTAP13-2Q52LG2 175 aa13.1□□□□□ -0.31
SDC3-202ENST00000339394 C9orf118A6NHY6 69 aa13.09□□□□□ -0.31
SDC3-202ENST00000339394 COL5A1-AS1Q5SY13 56 aa13.09□□□□□ -0.31
SDC3-202ENST00000339394 Q8N377 158 aa13.08□□□□□ -0.32
SDC3-202ENST00000339394 J3QL48 77 aa13.07□□□□□ -0.32
SDC3-202ENST00000339394 C3orf22Q8N5N4 141 aa13.07□□□□□ -0.32
SDC3-202ENST00000339394 LST1O00453 97 aa13.06□□□□□ -0.32
SDC3-202ENST00000339394 TYMSOSQ8TAI1 123 aa13.05□□□□□ -0.32
SDC3-202ENST00000339394 IGLV9-49A0A0B4J1Y8 123 aa13.03□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 74.8 ms