RNA–Protein interactions for RNA: ENST00000332797.10

CCDC28A-201, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,496 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-201ENST00000332797 COPS9Q8WXC6 57 aa9.59□□□□□ -0.87
CCDC28A-201ENST00000332797 MT1HL1P0DM35 61 aa9.58□□□□□ -0.88
CCDC28A-201ENST00000332797 IFITM1P13164 125 aa9.58□□□□□ -0.88
CCDC28A-201ENST00000332797 Q6ZVH6 145 aa9.58□□□□□ -0.88
CCDC28A-201ENST00000332797 IGLV6-57P01721 117 aa9.57□□□□□ -0.88
CCDC28A-201ENST00000332797 HIGD1BQ9P298 99 aa9.57□□□□□ -0.88
CCDC28A-201ENST00000332797 ETDCA0A1B0GVM5 59 aa9.56□□□□□ -0.88
CCDC28A-201ENST00000332797 SPRR1AP35321 89 aa9.56□□□□□ -0.88
CCDC28A-201ENST00000332797 MUSTN1Q8IVN3 82 aa9.56□□□□□ -0.88
CCDC28A-201ENST00000332797 OR13C6PQ8NH95 151 aa9.56□□□□□ -0.88
CCDC28A-201ENST00000332797 HERC1Q15751 4861 aa9.55□□□□□ -0.88
CCDC28A-201ENST00000332797 KRTAP1-4P0C5Y4 121 aa9.55□□□□□ -0.88
CCDC28A-201ENST00000332797 LINC00337Q8N6G1 96 aa9.55□□□□□ -0.88
CCDC28A-201ENST00000332797 TRAV23DV6A0A075B6W5 121 aa9.54□□□□□ -0.88
CCDC28A-201ENST00000332797 HIGD2AQ9BW72 106 aa9.54□□□□□ -0.88
CCDC28A-201ENST00000332797 KRTAP4-16G5E9R7 235 aaPredicted RBP9.53□□□□□ -0.88
CCDC28A-201ENST00000332797 C2orf91Q6ZV80 131 aa9.53□□□□□ -0.88
CCDC28A-201ENST00000332797 PPDPFQ9H3Y8 114 aa9.53□□□□□ -0.88
CCDC28A-201ENST00000332797 TNXBP22105 4242 aa9.53□□□□□ -0.88
CCDC28A-201ENST00000332797 PRR26Q8N8Z3 221 aa9.52□□□□□ -0.89
CCDC28A-201ENST00000332797 KRTAP10-8P60410 259 aa9.51□□□□□ -0.89
CCDC28A-201ENST00000332797 TAL2Q16559 108 aa9.51□□□□□ -0.89
CCDC28A-201ENST00000332797 CBY1Q9Y3M2 126 aa9.51□□□□□ -0.89
CCDC28A-201ENST00000332797 B5MCH6 92 aa9.5□□□□□ -0.89
CCDC28A-201ENST00000332797 ZNF73O43830 326 aaPredicted RBP9.5□□□□□ -0.89
CCDC28A-201ENST00000332797 HIST1H4GQ99525 98 aa9.49□□□□□ -0.89
CCDC28A-201ENST00000332797 PCP4L1A6NKN8 68 aa9.48□□□□□ -0.89
CCDC28A-201ENST00000332797 A6NDN8 102 aa9.47□□□□□ -0.89
CCDC28A-201ENST00000332797 CTAG1AP78358 180 aa9.47□□□□□ -0.89
CCDC28A-201ENST00000332797 HSD52Q0P140 79 aa9.47□□□□□ -0.89
CCDC28A-201ENST00000332797 Q6ZRX8 168 aa9.47□□□□□ -0.89
CCDC28A-201ENST00000332797 ANAPC11Q9NYG5 84 aa9.47□□□□□ -0.89
CCDC28A-201ENST00000332797 SMCR5Q8TEV8 140 aa9.47□□□□□ -0.89
CCDC28A-201ENST00000332797 A4D1N5 150 aa9.46□□□□□ -0.9
CCDC28A-201ENST00000332797 RPL13AP40429 203 aaKnown RBP9.46□□□□□ -0.9
CCDC28A-201ENST00000332797 TRAV13-2A0A0B4J235 113 aa9.45□□□□□ -0.9
CCDC28A-201ENST00000332797 HINT1P49773 126 aaPredicted RBP9.45□□□□□ -0.9
CCDC28A-201ENST00000332797 Q9BRP9 147 aa9.45□□□□□ -0.9
CCDC28A-201ENST00000332797 A0A087X002 238 aa9.44□□□□□ -0.9
CCDC28A-201ENST00000332797 CRYGAP11844 174 aa9.44□□□□□ -0.9
CCDC28A-201ENST00000332797 ZNF706Q9Y5V0 76 aaPredicted RBP9.44□□□□□ -0.9
CCDC28A-201ENST00000332797 M0R143 59 aa9.43□□□□□ -0.9
CCDC28A-201ENST00000332797 C6orf99Q4VX62 202 aa9.43□□□□□ -0.9
CCDC28A-201ENST00000332797 CEND1Q8N111 149 aa9.43□□□□□ -0.9
CCDC28A-201ENST00000332797 SPRR4Q96PI1 79 aa9.43□□□□□ -0.9
CCDC28A-201ENST00000332797 ERC2-IT1O76042 136 aa9.42□□□□□ -0.9
CCDC28A-201ENST00000332797 FAM229BQ4G0N7 80 aa9.42□□□□□ -0.9
CCDC28A-201ENST00000332797 TMEM238LA0A1B0GVL6 79 aa9.4□□□□□ -0.9
CCDC28A-201ENST00000332797 A6NJY4 79 aa9.4□□□□□ -0.9
CCDC28A-201ENST00000332797 COX7BP24311 80 aa9.4□□□□□ -0.9
CCDC28A-201ENST00000332797 ELOF1P60002 83 aaKnown RBP9.39□□□□□ -0.91
CCDC28A-201ENST00000332797 KRTAP13-2Q52LG2 175 aa9.39□□□□□ -0.91
CCDC28A-201ENST00000332797 BVES-AS1Q5T3Y7 98 aa9.39□□□□□ -0.91
CCDC28A-201ENST00000332797 TYMSOSQ8TAI1 123 aa9.39□□□□□ -0.91
CCDC28A-201ENST00000332797 SMIM11BQ8TCY0 68 aa9.38□□□□□ -0.91
CCDC28A-201ENST00000332797 TRBV7-6A0A0J9YX20 115 aa9.37□□□□□ -0.91
CCDC28A-201ENST00000332797 GAGE2AQ6NT46 116 aa9.37□□□□□ -0.91
CCDC28A-201ENST00000332797 DHRS4-AS1Q9P1J3 65 aa9.37□□□□□ -0.91
CCDC28A-201ENST00000332797 FXYD2P54710 66 aa9.36□□□□□ -0.91
CCDC28A-201ENST00000332797 A0A1B0GWB2 263 aa9.35□□□□□ -0.91
CCDC28A-201ENST00000332797 LINC00483Q53H64 154 aa9.34□□□□□ -0.91
CCDC28A-201ENST00000332797 C3orf22Q8N5N4 141 aa9.34□□□□□ -0.91
CCDC28A-201ENST00000332797 ST20-AS1Q8NBB2 130 aa9.34□□□□□ -0.91
CCDC28A-201ENST00000332797 RAB37Q96AX2 223 aa9.34□□□□□ -0.91
CCDC28A-201ENST00000332797 CFC1BP0CG36 223 aa9.33□□□□□ -0.92
CCDC28A-201ENST00000332797 CFC1P0CG37 223 aa9.33□□□□□ -0.92
CCDC28A-201ENST00000332797 BATFQ16520 125 aa9.33□□□□□ -0.92
CCDC28A-201ENST00000332797 SNHG12Q9BXW3 62 aa9.33□□□□□ -0.92
CCDC28A-201ENST00000332797 A0A0B4J2C4 111 aa9.31□□□□□ -0.92
CCDC28A-201ENST00000332797 H7C2G1 150 aa9.31□□□□□ -0.92
CCDC28A-201ENST00000332797 NHP2Q9NX24 153 aaKnown RBP9.31□□□□□ -0.92
CCDC28A-201ENST00000332797 VAMP3Q15836 100 aa9.3□□□□□ -0.92
CCDC28A-201ENST00000332797 HMCN2Q8NDA2 5059 aa9.3□□□□□ -0.92
CCDC28A-201ENST00000332797 IGLV9-49A0A0B4J1Y8 123 aa9.28□□□□□ -0.92
CCDC28A-201ENST00000332797 COL5A1-AS1Q5SY13 56 aa9.28□□□□□ -0.92
CCDC28A-201ENST00000332797 LINC00304Q8N9R0 145 aa9.28□□□□□ -0.92
CCDC28A-201ENST00000332797 TSPAN13O95857 204 aa9.28□□□□□ -0.92
CCDC28A-201ENST00000332797 PRO1854Q9UHT4 67 aa9.27□□□□□ -0.93
CCDC28A-201ENST00000332797 SLC25A20O43772 301 aa9.26□□□□□ -0.93
CCDC28A-201ENST00000332797 MOBPQ13875 183 aa9.26□□□□□ -0.93
CCDC28A-201ENST00000332797 Q1RN00 199 aa9.26□□□□□ -0.93
CCDC28A-201ENST00000332797 DEFB105AQ8NG35 78 aa9.26□□□□□ -0.93
CCDC28A-201ENST00000332797 SPRR1BP22528 89 aa9.24□□□□□ -0.93
CCDC28A-201ENST00000332797 LINC00575Q6W349 94 aa9.24□□□□□ -0.93
CCDC28A-201ENST00000332797 Q8NBF4 154 aa9.24□□□□□ -0.93
CCDC28A-201ENST00000332797 C9orf153Q5TBE3 101 aa9.23□□□□□ -0.93
CCDC28A-201ENST00000332797 K7ERJ3 54 aa9.22□□□□□ -0.93
CCDC28A-201ENST00000332797 TEX49A0A1B0GTD5 131 aa9.21□□□□□ -0.93
CCDC28A-201ENST00000332797 hADV29S1A0JD25 119 aa9.21□□□□□ -0.94
CCDC28A-201ENST00000332797 LAMTOR3Q9UHA4 124 aa9.21□□□□□ -0.94
CCDC28A-201ENST00000332797 IGLV5-48A0A075B6I7 105 aa9.2□□□□□ -0.94
CCDC28A-201ENST00000332797 TAX1BP3O14907 124 aa9.2□□□□□ -0.94
CCDC28A-201ENST00000332797 LINC01547P58512 204 aaPredicted RBP9.2□□□□□ -0.94
CCDC28A-201ENST00000332797 C4orf48Q5BLP8 95 aa9.2□□□□□ -0.94
CCDC28A-201ENST00000332797 SSBP3-AS1Q7Z2R9 100 aa9.2□□□□□ -0.94
CCDC28A-201ENST00000332797 SPAG11AQ6PDA7 123 aa9.19□□□□□ -0.94
CCDC28A-201ENST00000332797 Q6ZQY7 126 aa9.18□□□□□ -0.94
CCDC28A-201ENST00000332797 C9orf118A6NHY6 69 aa9.17□□□□□ -0.94
CCDC28A-201ENST00000332797 H0YGX0 51 aa9.16□□□□□ -0.94
CCDC28A-201ENST00000332797 Q8N377 158 aa9.16□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 50.8 ms