RNA–Protein interactions for RNA: ENST00000323668.11

TCOF1-201, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene TCOF1, Length 4,832 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-201ENST00000323668 SPTSSBQ8NFR3 76 aa9.8□□□□□ -0.84
TCOF1-201ENST00000323668 KLKP1Q107X0 134 aa9.8□□□□□ -0.84
TCOF1-201ENST00000323668 COL12A1Q99715 3063 aa9.79□□□□□ -0.84
TCOF1-201ENST00000323668 TNRC18O15417 2968 aaPredicted RBP9.79□□□□□ -0.84
TCOF1-201ENST00000323668 IGSF10Q6WRI0 2623 aa9.79□□□□□ -0.84
TCOF1-201ENST00000323668 ST20-AS1Q8NBB2 130 aa9.79□□□□□ -0.84
TCOF1-201ENST00000323668 KCNQ1DNQ9H478 68 aa9.79□□□□□ -0.84
TCOF1-201ENST00000323668 KRTAP1-1Q07627 177 aa9.78□□□□□ -0.84
TCOF1-201ENST00000323668 PRO0628Q9UI54 55 aa9.77□□□□□ -0.84
TCOF1-201ENST00000323668 ZNF706Q9Y5V0 76 aaPredicted RBP9.77□□□□□ -0.84
TCOF1-201ENST00000323668 ZZEF1O43149 2961 aa9.77□□□□□ -0.85
TCOF1-201ENST00000323668 HELZ2Q9BYK8 2649 aaKnown RBP9.77□□□□□ -0.85
TCOF1-201ENST00000323668 C1orf195Q5TG92 126 aa9.77□□□□□ -0.85
TCOF1-201ENST00000323668 M0R2N4 97 aa9.77□□□□□ -0.85
TCOF1-201ENST00000323668 C15orf56Q8N910 161 aa9.77□□□□□ -0.85
TCOF1-201ENST00000323668 SERTAD4-AS1Q5TG53 156 aa9.76□□□□□ -0.85
TCOF1-201ENST00000323668 DMXL1Q9Y485 3027 aa9.76□□□□□ -0.85
TCOF1-201ENST00000323668 ERC2-IT1O76042 136 aa9.75□□□□□ -0.85
TCOF1-201ENST00000323668 DNAH10OSP0CZ25 163 aa9.75□□□□□ -0.85
TCOF1-201ENST00000323668 SPINK6Q6UWN8 80 aa9.75□□□□□ -0.85
TCOF1-201ENST00000323668 H0Y9P7 68 aa9.75□□□□□ -0.85
TCOF1-201ENST00000323668 H7BZZ5 65 aa9.75□□□□□ -0.85
TCOF1-201ENST00000323668 CR1P17927 2039 aa9.75□□□□□ -0.85
TCOF1-201ENST00000323668 LINC00476Q8WZB0 136 aa9.75□□□□□ -0.85
TCOF1-201ENST00000323668 LINC00588Q9Y4M8 146 aa9.74□□□□□ -0.85
TCOF1-201ENST00000323668 MGAM2Q2M2H8 2515 aa9.74□□□□□ -0.85
TCOF1-201ENST00000323668 NBEAL2Q6ZNJ1 2754 aa9.74□□□□□ -0.85
TCOF1-201ENST00000323668 PSPHP1O15172 72 aa9.73□□□□□ -0.85
TCOF1-201ENST00000323668 hDV103S1A0JD37 113 aa9.73□□□□□ -0.85
TCOF1-201ENST00000323668 Q8N377 158 aa9.72□□□□□ -0.85
TCOF1-201ENST00000323668 ITPR1Q14643 2758 aa9.72□□□□□ -0.85
TCOF1-201ENST00000323668 FAM168BA1KXE4 195 aa9.72□□□□□ -0.85
TCOF1-201ENST00000323668 A6NED7 52 aa9.71□□□□□ -0.85
TCOF1-201ENST00000323668 IGLV1-50A0A075B6I6 118 aa9.71□□□□□ -0.86
TCOF1-201ENST00000323668 C4orf48Q5BLP8 95 aa9.7□□□□□ -0.86
TCOF1-201ENST00000323668 KRTAP24-1Q3LI83 254 aa9.67□□□□□ -0.86
TCOF1-201ENST00000323668 MAST4O15021 2626 aa9.67□□□□□ -0.86
TCOF1-201ENST00000323668 C1orf64Q8NEQ6 169 aa9.67□□□□□ -0.86
TCOF1-201ENST00000323668 UNC79Q9P2D8 2635 aa9.66□□□□□ -0.86
TCOF1-201ENST00000323668 IGHV6-1A0A0B4J1U7 121 aa9.66□□□□□ -0.86
TCOF1-201ENST00000323668 PCOTHQ58A44 107 aa9.66□□□□□ -0.86
TCOF1-201ENST00000323668 C16orf90A8MZG2 172 aa9.66□□□□□ -0.86
TCOF1-201ENST00000323668 K7EQZ3 153 aa9.66□□□□□ -0.86
TCOF1-201ENST00000323668 Q8NDZ9 215 aa9.66□□□□□ -0.86
TCOF1-201ENST00000323668 PRR15LQ9BU68 103 aa9.65□□□□□ -0.86
TCOF1-201ENST00000323668 NUPR2A6NF83 97 aa9.64□□□□□ -0.87
TCOF1-201ENST00000323668 WDFY3Q8IZQ1 3526 aa9.64□□□□□ -0.87
TCOF1-201ENST00000323668 SETXQ7Z333 2677 aaKnown RBP9.64□□□□□ -0.87
TCOF1-201ENST00000323668 KRTAP10-11P60412 298 aa9.63□□□□□ -0.87
TCOF1-201ENST00000323668 TLX1NBP0CAT3 122 aa9.63□□□□□ -0.87
TCOF1-201ENST00000323668 PHF5AQ7RTV0 110 aaKnown RBP9.62□□□□□ -0.87
TCOF1-201ENST00000323668 EPM2AB3EWF7 344 aa9.61□□□□□ -0.87
TCOF1-201ENST00000323668 PLA2G2DQ9UNK4 145 aa9.61□□□□□ -0.87
TCOF1-201ENST00000323668 PMAIP1Q13794 54 aa9.61□□□□□ -0.87
TCOF1-201ENST00000323668 CYSTM1Q9H1C7 97 aa9.6□□□□□ -0.87
TCOF1-201ENST00000323668 A0A1W2PNM2 257 aa9.6□□□□□ -0.87
TCOF1-201ENST00000323668 RPL37AP61513 92 aaKnown RBP9.6□□□□□ -0.87
TCOF1-201ENST00000323668 HRNRQ86YZ3 2850 aaPredicted RBP9.6□□□□□ -0.87
TCOF1-201ENST00000323668 IGLV5-48A0A075B6I7 105 aa9.59□□□□□ -0.87
TCOF1-201ENST00000323668 H3BPC8 53 aa9.59□□□□□ -0.87
TCOF1-201ENST00000323668 ZANQ9Y493 2812 aa9.58□□□□□ -0.88
TCOF1-201ENST00000323668 IGFL1Q6UW32 110 aa9.57□□□□□ -0.88
TCOF1-201ENST00000323668 CHTF8P0CG12 524 aa9.57□□□□□ -0.88
TCOF1-201ENST00000323668 UBR5O95071 2799 aaPredicted RBP9.57□□□□□ -0.88
TCOF1-201ENST00000323668 CIRBP-AS1Q8TBR5 109 aa9.57□□□□□ -0.88
TCOF1-201ENST00000323668 LIMD2Q9BT23 127 aa9.57□□□□□ -0.88
TCOF1-201ENST00000323668 LINC00336Q6ZUF6 198 aa9.56□□□□□ -0.88
TCOF1-201ENST00000323668 TP53AIP1Q9HCN2 124 aa9.55□□□□□ -0.88
TCOF1-201ENST00000323668 TRAV22A0A0B4J277 110 aa9.54□□□□□ -0.88
TCOF1-201ENST00000323668 A0A0G2JQZ4 141 aa9.53□□□□□ -0.88
TCOF1-201ENST00000323668 A0A1W2PNN7 141 aa9.53□□□□□ -0.88
TCOF1-201ENST00000323668 CASC10Q5T4H9 136 aa9.53□□□□□ -0.88
TCOF1-201ENST00000323668 OCR1Q9BZK8 76 aa9.53□□□□□ -0.88
TCOF1-201ENST00000323668 A8MWP4 228 aa9.52□□□□□ -0.89
TCOF1-201ENST00000323668 UTP20O75691 2785 aaKnown RBP9.52□□□□□ -0.89
TCOF1-201ENST00000323668 IGLV5-52A0A0A0MRZ9 124 aa9.51□□□□□ -0.89
TCOF1-201ENST00000323668 SEC61GP60059 68 aa9.51□□□□□ -0.89
TCOF1-201ENST00000323668 MDFIQ99750 246 aa9.51□□□□□ -0.89
TCOF1-201ENST00000323668 LY6G6CO95867 125 aa9.51□□□□□ -0.89
TCOF1-201ENST00000323668 ASH1LQ9NR48 2969 aaKnown RBP9.5□□□□□ -0.89
TCOF1-201ENST00000323668 NOTCH1P46531 2555 aa9.5□□□□□ -0.89
TCOF1-201ENST00000323668 MOBPQ13875 183 aa9.5□□□□□ -0.89
TCOF1-201ENST00000323668 IGLV5-37A0A075B6J1 123 aa9.49□□□□□ -0.89
TCOF1-201ENST00000323668 PRR15Q8IV56 129 aa9.48□□□□□ -0.89
TCOF1-201ENST00000323668 NBDYA0A0U1RRE5 68 aa9.48□□□□□ -0.89
TCOF1-201ENST00000323668 WIPF1O43516 503 aa9.47□□□□□ -0.89
TCOF1-201ENST00000323668 DCHS1Q96JQ0 3298 aa9.46□□□□□ -0.9
TCOF1-201ENST00000323668 TEP1Q99973 2627 aaKnown RBP9.46□□□□□ -0.9
TCOF1-201ENST00000323668 K7EIL1 84 aa9.44□□□□□ -0.9
TCOF1-201ENST00000323668 SPRR4Q96PI1 79 aa9.44□□□□□ -0.9
TCOF1-201ENST00000323668 MUC3AQ02505 3323 aa9.44□□□□□ -0.9
TCOF1-201ENST00000323668 C1orf134Q5TEV5 83 aa9.43□□□□□ -0.9
TCOF1-201ENST00000323668 A8MUN3 132 aa9.43□□□□□ -0.9
TCOF1-201ENST00000323668 DSCR10P59022 87 aa9.42□□□□□ -0.9
TCOF1-201ENST00000323668 ASPMQ8IZT6 3477 aa9.41□□□□□ -0.9
TCOF1-201ENST00000323668 Q5XG85 94 aa9.41□□□□□ -0.9
TCOF1-201ENST00000323668 C9orf163Q8N9P6 203 aa9.4□□□□□ -0.9
TCOF1-201ENST00000323668 SPAG11AQ6PDA7 123 aa9.4□□□□□ -0.9
TCOF1-201ENST00000323668 ZFHX4Q86UP3 3567 aa9.4□□□□□ -0.91
TCOF1-201ENST00000323668 RETNLBQ9BQ08 111 aa9.39□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 7.6 ms