RNA–Protein interactions for RNA: ENST00000315249.11

RFFL-201, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

APPRIS P1 TSL 2 BASIC

Gene RFFL, Length 7,293 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-201ENST00000315249 SZT2Q5T011 3432 aa9□□□□□ -0.97
RFFL-201ENST00000315249 ATP11AUNQ6ZP68 121 aa8.99□□□□□ -0.97
RFFL-201ENST00000315249 FAM240AA0A1B0GVK7 77 aa8.99□□□□□ -0.97
RFFL-201ENST00000315249 ZNF292O60281 2723 aa8.99□□□□□ -0.97
RFFL-201ENST00000315249 LINC00336Q6ZUF6 198 aa8.99□□□□□ -0.97
RFFL-201ENST00000315249 DSPP15924 2871 aaKnown RBP8.98□□□□□ -0.97
RFFL-201ENST00000315249 COX6B2Q6YFQ2 88 aa8.97□□□□□ -0.97
RFFL-201ENST00000315249 CDIP1Q9H305 208 aa8.97□□□□□ -0.97
RFFL-201ENST00000315249 C1orf64Q8NEQ6 169 aa8.97□□□□□ -0.97
RFFL-201ENST00000315249 APLNQ9ULZ1 77 aa8.95□□□□□ -0.98
RFFL-201ENST00000315249 CHD6Q8TD26 2715 aa8.95□□□□□ -0.98
RFFL-201ENST00000315249 CCDC179H3BU77 68 aa8.95□□□□□ -0.98
RFFL-201ENST00000315249 FAM218AQ96MZ4 157 aa8.95□□□□□ -0.98
RFFL-201ENST00000315249 TRBV7-7A0A0K0K1E9 115 aa8.95□□□□□ -0.98
RFFL-201ENST00000315249 SMIM29Q86T20 159 aa8.94□□□□□ -0.98
RFFL-201ENST00000315249 DNAH14Q0VDD8 3507 aa8.94□□□□□ -0.98
RFFL-201ENST00000315249 VPREB1P12018 145 aa8.94□□□□□ -0.98
RFFL-201ENST00000315249 C15orf56Q8N910 161 aa8.93□□□□□ -0.98
RFFL-201ENST00000315249 A0A0U1RQV1 116 aa8.93□□□□□ -0.98
RFFL-201ENST00000315249 LINC00304Q8N9R0 145 aa8.93□□□□□ -0.98
RFFL-201ENST00000315249 MAP1AP78559 2803 aaPredicted RBP8.92□□□□□ -0.98
RFFL-201ENST00000315249 C9orf92A6NGG3 77 aa8.91□□□□□ -0.98
RFFL-201ENST00000315249 CXCL6P80162 114 aa8.91□□□□□ -0.98
RFFL-201ENST00000315249 COL6A3P12111 3177 aa8.91□□□□□ -0.98
RFFL-201ENST00000315249 ZNF861PO60384 105 aa8.9□□□□□ -0.98
RFFL-201ENST00000315249 ANAPC11Q9NYG5 84 aa8.9□□□□□ -0.99
RFFL-201ENST00000315249 CASC10Q5T4H9 136 aa8.89□□□□□ -0.99
RFFL-201ENST00000315249 IGLV1-50A0A075B6I6 118 aa8.89□□□□□ -0.99
RFFL-201ENST00000315249 PRR34Q9NV39 138 aa8.89□□□□□ -0.99
RFFL-201ENST00000315249 C9orf163Q8N9P6 203 aa8.88□□□□□ -0.99
RFFL-201ENST00000315249 STAB1Q9NY15 2570 aa8.88□□□□□ -0.99
RFFL-201ENST00000315249 LINC00528Q8N1L1 170 aa8.87□□□□□ -0.99
RFFL-201ENST00000315249 TP53AIP1Q9HCN2 124 aa8.87□□□□□ -0.99
RFFL-201ENST00000315249 IGLV6-57P01721 117 aa8.87□□□□□ -0.99
RFFL-201ENST00000315249 LAMA1P25391 3075 aa8.86□□□□□ -0.99
RFFL-201ENST00000315249 TNP2Q05952 138 aa8.85□□□□□ -0.99
RFFL-201ENST00000315249 TMEM254Q8TBM7 123 aa8.85□□□□□ -0.99
RFFL-201ENST00000315249 C9orf129Q5T035 196 aaKnown RBP8.84□□□□□ -0.99
RFFL-201ENST00000315249 ZNF575Q86XF7 245 aa8.83□□□□□ -1
RFFL-201ENST00000315249 LINC00612Q8N6U2 182 aa8.83□□□□□ -1
RFFL-201ENST00000315249 Q6ZQT0 140 aa8.83□□□□□ -1
RFFL-201ENST00000315249 PSORS1C2Q9UIG4 136 aa8.83□□□□□ -1
RFFL-201ENST00000315249 A0A1W2PNN7 141 aa8.83□□□□□ -1
RFFL-201ENST00000315249 VCANP13611 3396 aa8.82□□□□□ -1
RFFL-201ENST00000315249 COL6A5A8TX70 2615 aa8.82□□□□□ -1
RFFL-201ENST00000315249 KCNQ1DNQ9H478 68 aa8.82□□□□□ -1
RFFL-201ENST00000315249 IGLV7-43P04211 117 aa8.81□□□□□ -1
RFFL-201ENST00000315249 OBSCN-AS1Q96MR7 158 aa8.81□□□□□ -1
RFFL-201ENST00000315249 PSPHP1O15172 72 aa8.81□□□□□ -1
RFFL-201ENST00000315249 SPAG11AQ6PDA7 123 aa8.81□□□□□ -1
RFFL-201ENST00000315249 ACYP2P14621 99 aa8.8□□□□□ -1
RFFL-201ENST00000315249 DSCR10P59022 87 aa8.79□□□□□ -1
RFFL-201ENST00000315249 FRYQ5TBA9 3013 aa8.78□□□□□ -1
RFFL-201ENST00000315249 FRYLO94915 3013 aa8.78□□□□□ -1
RFFL-201ENST00000315249 A0A0G2JQZ4 141 aa8.77□□□□□ -1
RFFL-201ENST00000315249 TRBV7-4A0A0J9YYF1 115 aa8.77□□□□□ -1.01
RFFL-201ENST00000315249 A0A1B0GW54 56 aa8.77□□□□□ -1.01
RFFL-201ENST00000315249 SSBP3-AS1Q7Z2R9 100 aa8.76□□□□□ -1.01
RFFL-201ENST00000315249 UNC79Q9P2D8 2635 aa8.76□□□□□ -1.01
RFFL-201ENST00000315249 SMIM26A0A096LP01 95 aa8.76□□□□□ -1.01
RFFL-201ENST00000315249 LOC110117498A0A087WWA1 95 aa8.75□□□□□ -1.01
RFFL-201ENST00000315249 TRAV22A0A0B4J277 110 aa8.75□□□□□ -1.01
RFFL-201ENST00000315249 C8orf87E5RJ46 101 aa8.75□□□□□ -1.01
RFFL-201ENST00000315249 FREM2Q5SZK8 3169 aa8.75□□□□□ -1.01
RFFL-201ENST00000315249 LITAFQ99732 161 aa8.75□□□□□ -1.01
RFFL-201ENST00000315249 IGFL1Q6UW32 110 aa8.75□□□□□ -1.01
RFFL-201ENST00000315249 IGSF10Q6WRI0 2623 aa8.74□□□□□ -1.01
RFFL-201ENST00000315249 IGLV8-61A0A075B6I0 122 aa8.74□□□□□ -1.01
RFFL-201ENST00000315249 A0A1B0GU69 56 aa8.74□□□□□ -1.01
RFFL-201ENST00000315249 A8MWP4 228 aa8.74□□□□□ -1.01
RFFL-201ENST00000315249 TLX1NBP0CAT3 122 aa8.73□□□□□ -1.01
RFFL-201ENST00000315249 CNBPP62633 177 aaKnown RBP8.72□□□□□ -1.01
RFFL-201ENST00000315249 MRPL34Q9BQ48 92 aaKnown RBP8.72□□□□□ -1.01
RFFL-201ENST00000315249 K7EQZ3 153 aa8.71□□□□□ -1.02
RFFL-201ENST00000315249 SMCPP49901 116 aaPredicted RBP8.71□□□□□ -1.02
RFFL-201ENST00000315249 EIF4EBP3O60516 100 aaPredicted RBP8.71□□□□□ -1.02
RFFL-201ENST00000315249 Q8N377 158 aa8.7□□□□□ -1.02
RFFL-201ENST00000315249 PLA2G2DQ9UNK4 145 aa8.68□□□□□ -1.02
RFFL-201ENST00000315249 ITPR2Q14571 2701 aa8.68□□□□□ -1.02
RFFL-201ENST00000315249 SPRR4Q96PI1 79 aa8.65□□□□□ -1.02
RFFL-201ENST00000315249 IGLV5-37A0A075B6J1 123 aa8.65□□□□□ -1.02
RFFL-201ENST00000315249 ERC2-IT1O76042 136 aa8.65□□□□□ -1.02
RFFL-201ENST00000315249 PMAIP1Q13794 54 aa8.65□□□□□ -1.03
RFFL-201ENST00000315249 RBM12B-AS1Q9P1G2 102 aa8.64□□□□□ -1.03
RFFL-201ENST00000315249 BOD1L1Q8NFC6 3051 aa8.64□□□□□ -1.03
RFFL-201ENST00000315249 NOTCH1P46531 2555 aa8.63□□□□□ -1.03
RFFL-201ENST00000315249 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP8.63□□□□□ -1.03
RFFL-201ENST00000315249 REV3LO60673 3130 aa8.62□□□□□ -1.03
RFFL-201ENST00000315249 C8orf17Q9NRJ1 99 aa8.62□□□□□ -1.03
RFFL-201ENST00000315249 A0A1B0GVX0 72 aa8.62□□□□□ -1.03
RFFL-201ENST00000315249 GCN1Q92616 2671 aaKnown RBP8.62□□□□□ -1.03
RFFL-201ENST00000315249 SPEGQ15772 3267 aa8.62□□□□□ -1.03
RFFL-201ENST00000315249 EYSQ5T1H1 3165 aa8.61□□□□□ -1.03
RFFL-201ENST00000315249 NBEAL1Q6ZS30 2694 aa8.61□□□□□ -1.03
RFFL-201ENST00000315249 LOC101927531A0A1B0GV80 90 aa8.61□□□□□ -1.03
RFFL-201ENST00000315249 FLG2Q5D862 2391 aaPredicted RBP8.61□□□□□ -1.03
RFFL-201ENST00000315249 PRR26Q8N8Z3 221 aa8.61□□□□□ -1.03
RFFL-201ENST00000315249 WIPF1O43516 503 aa8.61□□□□□ -1.03
RFFL-201ENST00000315249 CRYBG3Q68DQ2 2970 aa8.6□□□□□ -1.03
RFFL-201ENST00000315249 H3BPC8 53 aa8.59□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 118.6 ms