RNA–Protein interactions for RNA: ENST00000298260.8

SKA3-201, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 2,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-201ENST00000298260 FSHBP01225 129 aa8.99□□□□□ -0.97
SKA3-201ENST00000298260 PDE6GP18545 87 aa8.99□□□□□ -0.97
SKA3-201ENST00000298260 COX7BP24311 80 aa8.99□□□□□ -0.97
SKA3-201ENST00000298260 ATP5EP56381 51 aaPredicted RBP8.99□□□□□ -0.97
SKA3-201ENST00000298260 SMIM29Q86T20 159 aa8.98□□□□□ -0.97
SKA3-201ENST00000298260 A8MU10 97 aa8.98□□□□□ -0.97
SKA3-201ENST00000298260 PKD1L1Q8TDX9 2849 aa8.97□□□□□ -0.97
SKA3-201ENST00000298260 C6orf48Q9UBA6 75 aa8.97□□□□□ -0.97
SKA3-201ENST00000298260 HIGD2BQ4VC39 106 aa8.97□□□□□ -0.97
SKA3-201ENST00000298260 PRO0255Q9UI72 69 aa8.97□□□□□ -0.97
SKA3-201ENST00000298260 HTN3P15516 51 aa8.96□□□□□ -0.98
SKA3-201ENST00000298260 COL6A5A8TX70 2615 aa8.95□□□□□ -0.98
SKA3-201ENST00000298260 Q6ZRP5 223 aa8.95□□□□□ -0.98
SKA3-201ENST00000298260 DNAJC9-AS1A6NH13 148 aa8.95□□□□□ -0.98
SKA3-201ENST00000298260 ELOF1P60002 83 aaKnown RBP8.95□□□□□ -0.98
SKA3-201ENST00000298260 INAFM1C9JVW0 142 aa8.94□□□□□ -0.98
SKA3-201ENST00000298260 C1orf64Q8NEQ6 169 aa8.94□□□□□ -0.98
SKA3-201ENST00000298260 A0A0J9YWU9 116 aa8.92□□□□□ -0.98
SKA3-201ENST00000298260 hDV103S1A0JD37 113 aa8.92□□□□□ -0.98
SKA3-201ENST00000298260 ERC2-IT1O76042 136 aa8.92□□□□□ -0.98
SKA3-201ENST00000298260 IGHV4-30-4P0DP06 118 aa8.92□□□□□ -0.98
SKA3-201ENST00000298260 IGLV1-51P01701 117 aa8.91□□□□□ -0.98
SKA3-201ENST00000298260 X6R8D5 127 aa8.91□□□□□ -0.98
SKA3-201ENST00000298260 FBN1P35555 2871 aaKnown RBP8.91□□□□□ -0.98
SKA3-201ENST00000298260 VPREB1P12018 145 aa8.89□□□□□ -0.99
SKA3-201ENST00000298260 LINC00528Q8N1L1 170 aa8.89□□□□□ -0.99
SKA3-201ENST00000298260 DEFB135Q30KP9 77 aa8.88□□□□□ -0.99
SKA3-201ENST00000298260 PMAIP1Q13794 54 aa8.87□□□□□ -0.99
SKA3-201ENST00000298260 DEFB116Q30KQ4 102 aa8.87□□□□□ -0.99
SKA3-201ENST00000298260 NOTCH1P46531 2555 aa8.87□□□□□ -0.99
SKA3-201ENST00000298260 A0A0G2JQZ4 141 aa8.87□□□□□ -0.99
SKA3-201ENST00000298260 A0A1W2PNN7 141 aa8.87□□□□□ -0.99
SKA3-201ENST00000298260 ST20-AS1Q8NBB2 130 aa8.86□□□□□ -0.99
SKA3-201ENST00000298260 TRAV22A0A0B4J277 110 aa8.85□□□□□ -0.99
SKA3-201ENST00000298260 CAMK2N2Q96S95 79 aa8.85□□□□□ -0.99
SKA3-201ENST00000298260 A8MUN3 132 aa8.84□□□□□ -0.99
SKA3-201ENST00000298260 Q6ZRU5 148 aa8.84□□□□□ -0.99
SKA3-201ENST00000298260 Q8N377 158 aa8.84□□□□□ -0.99
SKA3-201ENST00000298260 PRR15Q8IV56 129 aa8.83□□□□□ -1
SKA3-201ENST00000298260 A0A1W2PNM2 257 aa8.83□□□□□ -1
SKA3-201ENST00000298260 KPRPQ5T749 579 aaPredicted RBP8.83□□□□□ -1
SKA3-201ENST00000298260 IGLV2-33A0A075B6J2 118 aaPredicted RBP8.82□□□□□ -1
SKA3-201ENST00000298260 K7EQZ3 153 aa8.82□□□□□ -1
SKA3-201ENST00000298260 H3BQ85 93 aa8.81□□□□□ -1
SKA3-201ENST00000298260 M0R378 163 aa8.81□□□□□ -1
SKA3-201ENST00000298260 CMC4P56277 68 aaPredicted RBP8.81□□□□□ -1
SKA3-201ENST00000298260 RPL37AP8A6NKH3 93 aa8.8□□□□□ -1
SKA3-201ENST00000298260 Q1T7F1 81 aa8.8□□□□□ -1
SKA3-201ENST00000298260 DSCR10P59022 87 aa8.79□□□□□ -1
SKA3-201ENST00000298260 NBEAL1Q6ZS30 2694 aa8.78□□□□□ -1
SKA3-201ENST00000298260 GVQW2A0A096LPI5 108 aaPredicted RBP8.78□□□□□ -1
SKA3-201ENST00000298260 PRR34Q9NV39 138 aa8.78□□□□□ -1
SKA3-201ENST00000298260 SERTAD4-AS1Q5TG53 156 aa8.77□□□□□ -1
SKA3-201ENST00000298260 ZCCHC13Q8WW36 166 aaKnown RBP8.77□□□□□ -1.01
SKA3-201ENST00000298260 KRTAP10-3P60369 221 aa8.76□□□□□ -1.01
SKA3-201ENST00000298260 WFDC10BQ8IUB3 73 aa8.76□□□□□ -1.01
SKA3-201ENST00000298260 SRRM2Q9UQ35 2752 aaKnown RBP8.76□□□□□ -1.01
SKA3-201ENST00000298260 C1orf137Q5JT78 98 aa8.76□□□□□ -1.01
SKA3-201ENST00000298260 LELP1Q5T871 98 aa8.76□□□□□ -1.01
SKA3-201ENST00000298260 WFDC13Q8IUB5 93 aa8.76□□□□□ -1.01
SKA3-201ENST00000298260 ETDCA0A1B0GVM5 59 aa8.75□□□□□ -1.01
SKA3-201ENST00000298260 PSCAO43653 123 aa8.75□□□□□ -1.01
SKA3-201ENST00000298260 LCE6AA0A183 80 aa8.74□□□□□ -1.01
SKA3-201ENST00000298260 MGAM2Q2M2H8 2515 aa8.74□□□□□ -1.01
SKA3-201ENST00000298260 FAM168BA1KXE4 195 aa8.73□□□□□ -1.01
SKA3-201ENST00000298260 SYCNQ0VAF6 134 aa8.73□□□□□ -1.01
SKA3-201ENST00000298260 C15orf56Q8N910 161 aa8.73□□□□□ -1.01
SKA3-201ENST00000298260 C7orf33Q8WU49 177 aa8.73□□□□□ -1.01
SKA3-201ENST00000298260 IGLV5-48A0A075B6I7 105 aa8.73□□□□□ -1.01
SKA3-201ENST00000298260 LYRM9A8MSI8 78 aa8.73□□□□□ -1.01
SKA3-201ENST00000298260 Q9BRP9 147 aa8.73□□□□□ -1.01
SKA3-201ENST00000298260 RETNQ9HD89 108 aa8.72□□□□□ -1.01
SKA3-201ENST00000298260 CSMD3Q7Z407 3707 aa8.72□□□□□ -1.01
SKA3-201ENST00000298260 EGFEM1PQ0D2K5 195 aa8.72□□□□□ -1.01
SKA3-201ENST00000298260 NKAPP1Q8N9T2 125 aa8.71□□□□□ -1.02
SKA3-201ENST00000298260 Q5VV11 94 aa8.71□□□□□ -1.02
SKA3-201ENST00000298260 SPTSSBQ8NFR3 76 aa8.7□□□□□ -1.02
SKA3-201ENST00000298260 RPL37AP61513 92 aaKnown RBP8.7□□□□□ -1.02
SKA3-201ENST00000298260 LINC00208Q96KT6 92 aa8.69□□□□□ -1.02
SKA3-201ENST00000298260 CHKB-CPT1BH3BT56 60 aa8.68□□□□□ -1.02
SKA3-201ENST00000298260 Q8NBF4 154 aa8.68□□□□□ -1.02
SKA3-201ENST00000298260 TENM3Q9P273 2699 aa8.68□□□□□ -1.02
SKA3-201ENST00000298260 KRTAP26-1Q6PEX3 210 aa8.68□□□□□ -1.02
SKA3-201ENST00000298260 HCG22E2RYF7 251 aa8.67□□□□□ -1.02
SKA3-201ENST00000298260 Q8NAQ8 132 aa8.67□□□□□ -1.02
SKA3-201ENST00000298260 KCNQ1DNQ9H478 68 aa8.67□□□□□ -1.02
SKA3-201ENST00000298260 IGKV2D-24A0A075B6R9 120 aa8.66□□□□□ -1.02
SKA3-201ENST00000298260 C16orf90A8MZG2 172 aa8.65□□□□□ -1.02
SKA3-201ENST00000298260 TNP2Q05952 138 aa8.65□□□□□ -1.02
SKA3-201ENST00000298260 Q6ZRX8 168 aa8.65□□□□□ -1.03
SKA3-201ENST00000298260 PRR15LQ9BU68 103 aa8.65□□□□□ -1.03
SKA3-201ENST00000298260 CYP4F30PQ9H0H9 118 aa8.64□□□□□ -1.03
SKA3-201ENST00000298260 B9D2Q9BPU9 175 aa8.64□□□□□ -1.03
SKA3-201ENST00000298260 SPART-AS1P0CW21 52 aa8.63□□□□□ -1.03
SKA3-201ENST00000298260 ANK2Q01484 3957 aa8.62□□□□□ -1.03
SKA3-201ENST00000298260 UBE2BP63146 152 aa8.62□□□□□ -1.03
SKA3-201ENST00000298260 Q8N9P0 234 aaPredicted RBP8.61□□□□□ -1.03
SKA3-201ENST00000298260 SPRR4Q96PI1 79 aa8.61□□□□□ -1.03
SKA3-201ENST00000298260 LINC00476Q8WZB0 136 aa8.6□□□□□ -1.03
SKA3-201ENST00000298260 LCA10Q71F78 164 aa8.6□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 166.1 ms