RNA–Protein interactions for RNA: ENST00000295550.8

COL6A3-201, Transcript of collagen type VI alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL6A3, Length 10,749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-201ENST00000295550 LOC101927531A0A1B0GV80 90 aa6.76□□□□□ -1.33
COL6A3-201ENST00000295550 UQCR11O14957 56 aa6.76□□□□□ -1.33
COL6A3-201ENST00000295550 LINC00167Q96N53 147 aa6.76□□□□□ -1.33
COL6A3-201ENST00000295550 RPL37AP61513 92 aaKnown RBP6.76□□□□□ -1.33
COL6A3-201ENST00000295550 HELZ2Q9BYK8 2649 aaKnown RBP6.75□□□□□ -1.33
COL6A3-201ENST00000295550 NHLRC4P0CG21 123 aaPredicted RBP6.74□□□□□ -1.33
COL6A3-201ENST00000295550 MIR22HGQ0VDD5 57 aa6.74□□□□□ -1.33
COL6A3-201ENST00000295550 EPM2AB3EWF7 344 aa6.73□□□□□ -1.33
COL6A3-201ENST00000295550 A8MWP4 228 aa6.73□□□□□ -1.33
COL6A3-201ENST00000295550 CHTF8P0CG12 524 aa6.72□□□□□ -1.33
COL6A3-201ENST00000295550 APLNQ9ULZ1 77 aa6.71□□□□□ -1.33
COL6A3-201ENST00000295550 ZNF292O60281 2723 aa6.71□□□□□ -1.34
COL6A3-201ENST00000295550 TRBV7-4A0A0J9YYF1 115 aa6.71□□□□□ -1.34
COL6A3-201ENST00000295550 LINC00336Q6ZUF6 198 aa6.7□□□□□ -1.34
COL6A3-201ENST00000295550 SMR3AQ99954 134 aa6.7□□□□□ -1.34
COL6A3-201ENST00000295550 K7EQZ3 153 aa6.69□□□□□ -1.34
COL6A3-201ENST00000295550 Q96NJ1 140 aa6.69□□□□□ -1.34
COL6A3-201ENST00000295550 FAM229AH3BQW9 127 aa6.69□□□□□ -1.34
COL6A3-201ENST00000295550 ST20-AS1Q8NBB2 130 aa6.68□□□□□ -1.34
COL6A3-201ENST00000295550 PRR15Q8IV56 129 aa6.67□□□□□ -1.34
COL6A3-201ENST00000295550 KLKP1Q107X0 134 aa6.67□□□□□ -1.34
COL6A3-201ENST00000295550 LCA10Q71F78 164 aa6.67□□□□□ -1.34
COL6A3-201ENST00000295550 IGLV6-57P01721 117 aa6.67□□□□□ -1.34
COL6A3-201ENST00000295550 TEP1Q99973 2627 aaKnown RBP6.66□□□□□ -1.34
COL6A3-201ENST00000295550 C16orf90A8MZG2 172 aa6.66□□□□□ -1.34
COL6A3-201ENST00000295550 H3BNG1 76 aa6.65□□□□□ -1.34
COL6A3-201ENST00000295550 TYMSOSQ8TAI1 123 aa6.65□□□□□ -1.35
COL6A3-201ENST00000295550 PHF5AQ7RTV0 110 aaKnown RBP6.65□□□□□ -1.35
COL6A3-201ENST00000295550 GVQW2A0A096LPI5 108 aaPredicted RBP6.64□□□□□ -1.35
COL6A3-201ENST00000295550 FAM168BA1KXE4 195 aa6.63□□□□□ -1.35
COL6A3-201ENST00000295550 Q6ZRP5 223 aa6.63□□□□□ -1.35
COL6A3-201ENST00000295550 H7BZZ5 65 aa6.63□□□□□ -1.35
COL6A3-201ENST00000295550 C9orf129Q5T035 196 aaKnown RBP6.63□□□□□ -1.35
COL6A3-201ENST00000295550 CDC42SE1Q9NRR8 79 aa6.62□□□□□ -1.35
COL6A3-201ENST00000295550 CSNK1G2-AS1Q8NCQ2 148 aa6.61□□□□□ -1.35
COL6A3-201ENST00000295550 MRPL34Q9BQ48 92 aaKnown RBP6.61□□□□□ -1.35
COL6A3-201ENST00000295550 LUZP6Q538Z0 58 aa6.6□□□□□ -1.35
COL6A3-201ENST00000295550 A0A096LNT2 108 aa6.6□□□□□ -1.35
COL6A3-201ENST00000295550 RTL8CO15255 209 aa6.6□□□□□ -1.35
COL6A3-201ENST00000295550 ZNF575Q86XF7 245 aa6.59□□□□□ -1.35
COL6A3-201ENST00000295550 Q8NAQ8 132 aa6.59□□□□□ -1.35
COL6A3-201ENST00000295550 NSD1Q96L73 2696 aaPredicted RBP6.57□□□□□ -1.36
COL6A3-201ENST00000295550 A0A0D9SG42 100 aa6.57□□□□□ -1.36
COL6A3-201ENST00000295550 OBSCN-AS1Q96MR7 158 aa6.56□□□□□ -1.36
COL6A3-201ENST00000295550 EIF4EBP3O60516 100 aaPredicted RBP6.56□□□□□ -1.36
COL6A3-201ENST00000295550 A0A1B0GVX0 72 aa6.56□□□□□ -1.36
COL6A3-201ENST00000295550 DSCR10P59022 87 aa6.56□□□□□ -1.36
COL6A3-201ENST00000295550 LINC01554Q52M75 96 aa6.56□□□□□ -1.36
COL6A3-201ENST00000295550 C8orf17Q9NRJ1 99 aa6.56□□□□□ -1.36
COL6A3-201ENST00000295550 IGFL1Q6UW32 110 aa6.55□□□□□ -1.36
COL6A3-201ENST00000295550 A0A0C4DFX4 3053 aa6.55□□□□□ -1.36
COL6A3-201ENST00000295550 KCNQ1DNQ9H478 68 aa6.54□□□□□ -1.36
COL6A3-201ENST00000295550 LINC00612Q8N6U2 182 aa6.54□□□□□ -1.36
COL6A3-201ENST00000295550 RANBP2P49792 3224 aaKnown RBP6.54□□□□□ -1.36
COL6A3-201ENST00000295550 SPANXA2-OT1Q8N9U9 137 aa6.54□□□□□ -1.36
COL6A3-201ENST00000295550 GIG44P09565 113 aaPredicted RBP6.53□□□□□ -1.36
COL6A3-201ENST00000295550 H3BS24 57 aa6.53□□□□□ -1.36
COL6A3-201ENST00000295550 APCP25054 2843 aa6.52□□□□□ -1.37
COL6A3-201ENST00000295550 SETXQ7Z333 2677 aaKnown RBP6.52□□□□□ -1.37
COL6A3-201ENST00000295550 NBDYA0A0U1RRE5 68 aa6.52□□□□□ -1.37
COL6A3-201ENST00000295550 Q1T7F1 81 aa6.52□□□□□ -1.37
COL6A3-201ENST00000295550 COX6B2Q6YFQ2 88 aa6.52□□□□□ -1.37
COL6A3-201ENST00000295550 UTP20O75691 2785 aaKnown RBP6.52□□□□□ -1.37
COL6A3-201ENST00000295550 DNAH10OSP0CZ25 163 aa6.51□□□□□ -1.37
COL6A3-201ENST00000295550 LINC00528Q8N1L1 170 aa6.51□□□□□ -1.37
COL6A3-201ENST00000295550 LINC00588Q9Y4M8 146 aa6.5□□□□□ -1.37
COL6A3-201ENST00000295550 RBM12B-AS1Q9P1G2 102 aa6.5□□□□□ -1.37
COL6A3-201ENST00000295550 PRR34Q9NV39 138 aa6.5□□□□□ -1.37
COL6A3-201ENST00000295550 FAM104AQ969W3 186 aa6.49□□□□□ -1.37
COL6A3-201ENST00000295550 ITPR2Q14571 2701 aa6.49□□□□□ -1.37
COL6A3-201ENST00000295550 C9orf92A6NGG3 77 aa6.49□□□□□ -1.37
COL6A3-201ENST00000295550 LINC00304Q8N9R0 145 aa6.49□□□□□ -1.37
COL6A3-201ENST00000295550 C19orf73Q9NVV2 129 aa6.48□□□□□ -1.37
COL6A3-201ENST00000295550 IGLV1-50A0A075B6I6 118 aa6.48□□□□□ -1.37
COL6A3-201ENST00000295550 PLA2G2DQ9UNK4 145 aa6.48□□□□□ -1.37
COL6A3-201ENST00000295550 Q8N1X5 172 aa6.46□□□□□ -1.38
COL6A3-201ENST00000295550 WIPF1O43516 503 aa6.45□□□□□ -1.38
COL6A3-201ENST00000295550 MKI67P46013 3256 aaKnown RBP6.45□□□□□ -1.38
COL6A3-201ENST00000295550 A0A0G2JQZ4 141 aa6.45□□□□□ -1.38
COL6A3-201ENST00000295550 A0A1W2PNN7 141 aa6.45□□□□□ -1.38
COL6A3-201ENST00000295550 NBEAL2Q6ZNJ1 2754 aa6.45□□□□□ -1.38
COL6A3-201ENST00000295550 IGLV5-48A0A075B6I7 105 aa6.45□□□□□ -1.38
COL6A3-201ENST00000295550 KMT2BQ9UMN6 2715 aaPredicted RBP6.44□□□□□ -1.38
COL6A3-201ENST00000295550 C15orf56Q8N910 161 aa6.44□□□□□ -1.38
COL6A3-201ENST00000295550 DSPP15924 2871 aaKnown RBP6.44□□□□□ -1.38
COL6A3-201ENST00000295550 Q8N377 158 aa6.44□□□□□ -1.38
COL6A3-201ENST00000295550 LINC00483Q53H64 154 aa6.43□□□□□ -1.38
COL6A3-201ENST00000295550 LAMA2P24043 3122 aaKnown RBP6.43□□□□□ -1.38
COL6A3-201ENST00000295550 MGAQ8IWI9 3026 aa6.42□□□□□ -1.38
COL6A3-201ENST00000295550 TRIOO75962 3097 aa6.42□□□□□ -1.38
COL6A3-201ENST00000295550 ITPR1Q14643 2758 aa6.42□□□□□ -1.38
COL6A3-201ENST00000295550 Q75L30 129 aa6.42□□□□□ -1.38
COL6A3-201ENST00000295550 CFAP54Q96N23 3096 aa6.4□□□□□ -1.38
COL6A3-201ENST00000295550 IGLV5-37A0A075B6J1 123 aa6.4□□□□□ -1.39
COL6A3-201ENST00000295550 ZNF861PO60384 105 aa6.39□□□□□ -1.39
COL6A3-201ENST00000295550 TLX1NBP0CAT3 122 aa6.39□□□□□ -1.39
COL6A3-201ENST00000295550 BRCA2P51587 3418 aa6.38□□□□□ -1.39
COL6A3-201ENST00000295550 J3QL48 77 aa6.38□□□□□ -1.39
COL6A3-201ENST00000295550 KRTAP1-3Q8IUG1 177 aa6.38□□□□□ -1.39
COL6A3-201ENST00000295550 OCR1Q9BZK8 76 aa6.37□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 54.2 ms