RNA–Protein interactions for RNA: ENST00000293441.5

SHANK1-201, Transcript of SH3 and multiple ankyrin repeat domains 1, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene SHANK1, Length 6,643 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1-201ENST00000293441 LINC00528Q8N1L1 170 aa11.35□□□□□ -0.59
SHANK1-201ENST00000293441 OBSCN-AS1Q96MR7 158 aa11.35□□□□□ -0.59
SHANK1-201ENST00000293441 ANAPC11Q9NYG5 84 aa11.34□□□□□ -0.59
SHANK1-201ENST00000293441 F8P00451 2351 aa11.33□□□□□ -0.6
SHANK1-201ENST00000293441 A0A0G2JQZ4 141 aa11.32□□□□□ -0.6
SHANK1-201ENST00000293441 A0A1W2PNN7 141 aa11.32□□□□□ -0.6
SHANK1-201ENST00000293441 KRTAP1-3Q8IUG1 177 aa11.32□□□□□ -0.6
SHANK1-201ENST00000293441 DNAH12Q6ZR08 3092 aa11.31□□□□□ -0.6
SHANK1-201ENST00000293441 EIF4EBP3O60516 100 aaPredicted RBP11.3□□□□□ -0.6
SHANK1-201ENST00000293441 C9orf163Q8N9P6 203 aa11.29□□□□□ -0.6
SHANK1-201ENST00000293441 LINC00612Q8N6U2 182 aa11.28□□□□□ -0.6
SHANK1-201ENST00000293441 APLNQ9ULZ1 77 aa11.28□□□□□ -0.6
SHANK1-201ENST00000293441 CASC10Q5T4H9 136 aa11.28□□□□□ -0.6
SHANK1-201ENST00000293441 C8orf17Q9NRJ1 99 aa11.28□□□□□ -0.6
SHANK1-201ENST00000293441 SSBP3-AS1Q7Z2R9 100 aa11.28□□□□□ -0.6
SHANK1-201ENST00000293441 Q8N377 158 aa11.28□□□□□ -0.6
SHANK1-201ENST00000293441 C4orf26Q17RF5 130 aa11.28□□□□□ -0.6
SHANK1-201ENST00000293441 IGLV7-43P04211 117 aa11.26□□□□□ -0.61
SHANK1-201ENST00000293441 LINC00336Q6ZUF6 198 aa11.25□□□□□ -0.61
SHANK1-201ENST00000293441 TLX1NBP0CAT3 122 aa11.25□□□□□ -0.61
SHANK1-201ENST00000293441 PSORS1C2Q9UIG4 136 aa11.25□□□□□ -0.61
SHANK1-201ENST00000293441 A0A1B0GVX0 72 aa11.24□□□□□ -0.61
SHANK1-201ENST00000293441 COA5Q86WW8 74 aa11.23□□□□□ -0.61
SHANK1-201ENST00000293441 PRR15Q8IV56 129 aa11.23□□□□□ -0.61
SHANK1-201ENST00000293441 KRTAP1-1Q07627 177 aa11.23□□□□□ -0.61
SHANK1-201ENST00000293441 PLA2G2DQ9UNK4 145 aa11.23□□□□□ -0.61
SHANK1-201ENST00000293441 LINC01600Q96MT4 127 aa11.22□□□□□ -0.61
SHANK1-201ENST00000293441 ZNF575Q86XF7 245 aa11.2□□□□□ -0.62
SHANK1-201ENST00000293441 PRO0628Q9UI54 55 aa11.19□□□□□ -0.62
SHANK1-201ENST00000293441 IGLV5-37A0A075B6J1 123 aa11.16□□□□□ -0.62
SHANK1-201ENST00000293441 ERC2-IT1O76042 136 aa11.15□□□□□ -0.62
SHANK1-201ENST00000293441 SPRR4Q96PI1 79 aa11.14□□□□□ -0.63
SHANK1-201ENST00000293441 CNBPP62633 177 aaKnown RBP11.14□□□□□ -0.63
SHANK1-201ENST00000293441 RPS28P62857 69 aaKnown RBP11.14□□□□□ -0.63
SHANK1-201ENST00000293441 SPINT4Q6UDR6 99 aa11.14□□□□□ -0.63
SHANK1-201ENST00000293441 RBM12B-AS1Q9P1G2 102 aa11.12□□□□□ -0.63
SHANK1-201ENST00000293441 A8MUN3 132 aa11.09□□□□□ -0.63
SHANK1-201ENST00000293441 TNP2Q05952 138 aa11.09□□□□□ -0.63
SHANK1-201ENST00000293441 UQCR11O14957 56 aa11.08□□□□□ -0.64
SHANK1-201ENST00000293441 EPG5Q9HCE0 2579 aa11.05□□□□□ -0.64
SHANK1-201ENST00000293441 LINC01554Q52M75 96 aa11.02□□□□□ -0.65
SHANK1-201ENST00000293441 MIR22HGQ0VDD5 57 aa11.01□□□□□ -0.65
SHANK1-201ENST00000293441 A0A1W2PNM2 257 aa11.01□□□□□ -0.65
SHANK1-201ENST00000293441 Q8N1X5 172 aa11□□□□□ -0.65
SHANK1-201ENST00000293441 C5orf42Q9H799 3197 aa10.98□□□□□ -0.65
SHANK1-201ENST00000293441 HECTD1Q9ULT8 2610 aa10.98□□□□□ -0.65
SHANK1-201ENST00000293441 CYP4F30PQ9H0H9 118 aa10.97□□□□□ -0.65
SHANK1-201ENST00000293441 IGLV5-48A0A075B6I7 105 aa10.97□□□□□ -0.65
SHANK1-201ENST00000293441 CRIPTQ9P021 101 aa10.97□□□□□ -0.65
SHANK1-201ENST00000293441 BPTFQ12830 3046 aa10.96□□□□□ -0.65
SHANK1-201ENST00000293441 A0A0D9SG42 100 aa10.94□□□□□ -0.66
SHANK1-201ENST00000293441 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP10.94□□□□□ -0.66
SHANK1-201ENST00000293441 USP24Q9UPU5 2620 aa10.94□□□□□ -0.66
SHANK1-201ENST00000293441 PRRC2CQ9Y520 2896 aaKnown RBP10.93□□□□□ -0.66
SHANK1-201ENST00000293441 KLKP1Q107X0 134 aa10.92□□□□□ -0.66
SHANK1-201ENST00000293441 PRR26Q8N8Z3 221 aa10.92□□□□□ -0.66
SHANK1-201ENST00000293441 CEP350Q5VT06 3117 aa10.91□□□□□ -0.66
SHANK1-201ENST00000293441 Q6ZSA8 131 aa10.91□□□□□ -0.66
SHANK1-201ENST00000293441 FAM104AQ969W3 186 aa10.88□□□□□ -0.67
SHANK1-201ENST00000293441 IGLV7-46A0A075B6I9 117 aa10.88□□□□□ -0.67
SHANK1-201ENST00000293441 CR1P17927 2039 aa10.88□□□□□ -0.67
SHANK1-201ENST00000293441 FLNBO75369 2602 aaKnown RBP10.86□□□□□ -0.67
SHANK1-201ENST00000293441 MGAM2Q2M2H8 2515 aa10.85□□□□□ -0.67
SHANK1-201ENST00000293441 H7BZZ5 65 aa10.84□□□□□ -0.67
SHANK1-201ENST00000293441 CD164Q04900 197 aa10.82□□□□□ -0.68
SHANK1-201ENST00000293441 M0R2T5 61 aa10.79□□□□□ -0.68
SHANK1-201ENST00000293441 FLNAP21333 2647 aaKnown RBP10.76□□□□□ -0.69
SHANK1-201ENST00000293441 SPANXA2-OT1Q8N9U9 137 aa10.76□□□□□ -0.69
SHANK1-201ENST00000293441 PCNTO95613 3336 aa10.75□□□□□ -0.69
SHANK1-201ENST00000293441 WIPF1O43516 503 aa10.75□□□□□ -0.69
SHANK1-201ENST00000293441 CDC42SE1Q9NRR8 79 aa10.74□□□□□ -0.69
SHANK1-201ENST00000293441 ITPR3Q14573 2671 aa10.73□□□□□ -0.69
SHANK1-201ENST00000293441 PLAC8Q9NZF1 115 aa10.72□□□□□ -0.69
SHANK1-201ENST00000293441 CHD7Q9P2D1 2997 aa10.71□□□□□ -0.7
SHANK1-201ENST00000293441 FAM229BQ4G0N7 80 aa10.7□□□□□ -0.7
SHANK1-201ENST00000293441 OCR1Q9BZK8 76 aa10.64□□□□□ -0.71
SHANK1-201ENST00000293441 HELZ2Q9BYK8 2649 aaKnown RBP10.63□□□□□ -0.71
SHANK1-201ENST00000293441 HRES1P13985 223 aa10.63□□□□□ -0.71
SHANK1-201ENST00000293441 CAMK2N1Q7Z7J9 78 aa10.63□□□□□ -0.71
SHANK1-201ENST00000293441 Q8NDZ9 215 aa10.6□□□□□ -0.71
SHANK1-201ENST00000293441 ZCCHC13Q8WW36 166 aaKnown RBP10.59□□□□□ -0.71
SHANK1-201ENST00000293441 Q5VSD8 79 aa10.58□□□□□ -0.72
SHANK1-201ENST00000293441 ATRQ13535 2644 aa10.57□□□□□ -0.72
SHANK1-201ENST00000293441 CFAP46Q8IYW2 2715 aa10.56□□□□□ -0.72
SHANK1-201ENST00000293441 KRTAP1-5Q9BYS1 174 aa10.56□□□□□ -0.72
SHANK1-201ENST00000293441 S4R3F8 94 aa10.56□□□□□ -0.72
SHANK1-201ENST00000293441 A0A1B0GU33 70 aa10.55□□□□□ -0.72
SHANK1-201ENST00000293441 MMP24-AS1A0A0U1RRL7 71 aa10.54□□□□□ -0.72
SHANK1-201ENST00000293441 KTN1-AS1Q86SY8 53 aa10.54□□□□□ -0.72
SHANK1-201ENST00000293441 SPRR1AP35321 89 aa10.53□□□□□ -0.72
SHANK1-201ENST00000293441 Q8N9P0 234 aaPredicted RBP10.51□□□□□ -0.73
SHANK1-201ENST00000293441 MAST4O15021 2626 aa10.51□□□□□ -0.73
SHANK1-201ENST00000293441 LCE6AA0A183 80 aa10.49□□□□□ -0.73
SHANK1-201ENST00000293441 KRTAP10-1P60331 282 aa10.49□□□□□ -0.73
SHANK1-201ENST00000293441 CSAG1Q6PB30 78 aa10.49□□□□□ -0.73
SHANK1-201ENST00000293441 KRTAP10-2P60368 255 aa10.48□□□□□ -0.73
SHANK1-201ENST00000293441 LCA10Q71F78 164 aa10.48□□□□□ -0.73
SHANK1-201ENST00000293441 MKI67P46013 3256 aaKnown RBP10.46□□□□□ -0.73
SHANK1-201ENST00000293441 LUZP6Q538Z0 58 aa10.44□□□□□ -0.74
SHANK1-201ENST00000293441 Q1T7F1 81 aa10.44□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 58.7 ms