RNA–Protein interactions for RNA: ENST00000274030.10

USP53-201, Transcript of ubiquitin specific peptidase 53, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP53, Length 5,936 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-201ENST00000274030 C5orf42Q9H799 3197 aa7.57□□□□□ -1.2
USP53-201ENST00000274030 H3BPC8 53 aa7.57□□□□□ -1.2
USP53-201ENST00000274030 C15orf56Q8N910 161 aa7.57□□□□□ -1.2
USP53-201ENST00000274030 KCNQ1DNQ9H478 68 aa7.57□□□□□ -1.2
USP53-201ENST00000274030 LINC00528Q8N1L1 170 aa7.57□□□□□ -1.2
USP53-201ENST00000274030 IGFL1Q6UW32 110 aa7.56□□□□□ -1.2
USP53-201ENST00000274030 MRPL34Q9BQ48 92 aaKnown RBP7.56□□□□□ -1.2
USP53-201ENST00000274030 SMR3BP02814 79 aaPredicted RBP7.56□□□□□ -1.2
USP53-201ENST00000274030 DSCR10P59022 87 aa7.56□□□□□ -1.2
USP53-201ENST00000274030 C9orf129Q5T035 196 aaKnown RBP7.55□□□□□ -1.2
USP53-201ENST00000274030 CENPEQ02224 2701 aa7.55□□□□□ -1.2
USP53-201ENST00000274030 C19orf73Q9NVV2 129 aa7.54□□□□□ -1.2
USP53-201ENST00000274030 J3QL48 77 aa7.54□□□□□ -1.2
USP53-201ENST00000274030 PRR34Q9NV39 138 aa7.54□□□□□ -1.2
USP53-201ENST00000274030 A0A096LNT2 108 aa7.53□□□□□ -1.2
USP53-201ENST00000274030 C9orf92A6NGG3 77 aa7.53□□□□□ -1.2
USP53-201ENST00000274030 LOC101927531A0A1B0GV80 90 aa7.53□□□□□ -1.2
USP53-201ENST00000274030 RPS28P62857 69 aaKnown RBP7.53□□□□□ -1.2
USP53-201ENST00000274030 Q8N377 158 aa7.53□□□□□ -1.2
USP53-201ENST00000274030 FLNAP21333 2647 aaKnown RBP7.52□□□□□ -1.2
USP53-201ENST00000274030 LINC01600Q96MT4 127 aa7.52□□□□□ -1.21
USP53-201ENST00000274030 A8MUN3 132 aa7.52□□□□□ -1.21
USP53-201ENST00000274030 OBSCN-AS1Q96MR7 158 aa7.52□□□□□ -1.21
USP53-201ENST00000274030 CASC10Q5T4H9 136 aa7.51□□□□□ -1.21
USP53-201ENST00000274030 COA5Q86WW8 74 aa7.51□□□□□ -1.21
USP53-201ENST00000274030 C8orf87E5RJ46 101 aa7.5□□□□□ -1.21
USP53-201ENST00000274030 ITPR3Q14573 2671 aa7.5□□□□□ -1.21
USP53-201ENST00000274030 ZNF861PO60384 105 aa7.49□□□□□ -1.21
USP53-201ENST00000274030 C8orf17Q9NRJ1 99 aa7.49□□□□□ -1.21
USP53-201ENST00000274030 A0A087WTM6 91 aa7.49□□□□□ -1.21
USP53-201ENST00000274030 PRR15Q8IV56 129 aa7.48□□□□□ -1.21
USP53-201ENST00000274030 COX6B2Q6YFQ2 88 aa7.48□□□□□ -1.21
USP53-201ENST00000274030 AKAP13Q12802 2813 aa7.47□□□□□ -1.21
USP53-201ENST00000274030 LINC00304Q8N9R0 145 aa7.47□□□□□ -1.21
USP53-201ENST00000274030 ERC2-IT1O76042 136 aa7.46□□□□□ -1.22
USP53-201ENST00000274030 C9orf163Q8N9P6 203 aa7.45□□□□□ -1.22
USP53-201ENST00000274030 SSBP3-AS1Q7Z2R9 100 aa7.45□□□□□ -1.22
USP53-201ENST00000274030 HELZ2Q9BYK8 2649 aaKnown RBP7.45□□□□□ -1.22
USP53-201ENST00000274030 BRCA2P51587 3418 aa7.45□□□□□ -1.22
USP53-201ENST00000274030 SPINT4Q6UDR6 99 aa7.45□□□□□ -1.22
USP53-201ENST00000274030 CFAP54Q96N23 3096 aa7.44□□□□□ -1.22
USP53-201ENST00000274030 A0A1B0GVX0 72 aa7.44□□□□□ -1.22
USP53-201ENST00000274030 CFAP46Q8IYW2 2715 aa7.44□□□□□ -1.22
USP53-201ENST00000274030 LINC00612Q8N6U2 182 aa7.44□□□□□ -1.22
USP53-201ENST00000274030 CHD7Q9P2D1 2997 aa7.44□□□□□ -1.22
USP53-201ENST00000274030 APLNQ9ULZ1 77 aa7.43□□□□□ -1.22
USP53-201ENST00000274030 PSORS1C2Q9UIG4 136 aa7.43□□□□□ -1.22
USP53-201ENST00000274030 MKI67P46013 3256 aaKnown RBP7.41□□□□□ -1.22
USP53-201ENST00000274030 RANBP2P49792 3224 aaKnown RBP7.41□□□□□ -1.22
USP53-201ENST00000274030 UQCR11O14957 56 aa7.4□□□□□ -1.22
USP53-201ENST00000274030 KRTAP1-3Q8IUG1 177 aa7.39□□□□□ -1.23
USP53-201ENST00000274030 IGLV7-43P04211 117 aa7.39□□□□□ -1.23
USP53-201ENST00000274030 TLX1NBP0CAT3 122 aa7.39□□□□□ -1.23
USP53-201ENST00000274030 A0A1W2PNM2 257 aa7.39□□□□□ -1.23
USP53-201ENST00000274030 STAB1Q9NY15 2570 aa7.38□□□□□ -1.23
USP53-201ENST00000274030 KLKP1Q107X0 134 aa7.37□□□□□ -1.23
USP53-201ENST00000274030 LAMA3Q16787 3333 aa7.37□□□□□ -1.23
USP53-201ENST00000274030 SPRR4Q96PI1 79 aa7.36□□□□□ -1.23
USP53-201ENST00000274030 KRTAP1-1Q07627 177 aa7.36□□□□□ -1.23
USP53-201ENST00000274030 PLA2G2DQ9UNK4 145 aa7.36□□□□□ -1.23
USP53-201ENST00000274030 CHD6Q8TD26 2715 aa7.36□□□□□ -1.23
USP53-201ENST00000274030 MIR22HGQ0VDD5 57 aa7.35□□□□□ -1.23
USP53-201ENST00000274030 CR1P17927 2039 aa7.35□□□□□ -1.23
USP53-201ENST00000274030 Q8N1X5 172 aa7.35□□□□□ -1.23
USP53-201ENST00000274030 H7BZZ5 65 aa7.34□□□□□ -1.23
USP53-201ENST00000274030 LINC01554Q52M75 96 aa7.34□□□□□ -1.23
USP53-201ENST00000274030 IGLV5-37A0A075B6J1 123 aa7.34□□□□□ -1.23
USP53-201ENST00000274030 CYP4F30PQ9H0H9 118 aa7.33□□□□□ -1.24
USP53-201ENST00000274030 ZNF575Q86XF7 245 aa7.33□□□□□ -1.24
USP53-201ENST00000274030 TEP1Q99973 2627 aaKnown RBP7.33□□□□□ -1.24
USP53-201ENST00000274030 SETXQ7Z333 2677 aaKnown RBP7.33□□□□□ -1.24
USP53-201ENST00000274030 LAMA2P24043 3122 aaKnown RBP7.32□□□□□ -1.24
USP53-201ENST00000274030 A0A0D9SG42 100 aa7.31□□□□□ -1.24
USP53-201ENST00000274030 CNBPP62633 177 aaKnown RBP7.31□□□□□ -1.24
USP53-201ENST00000274030 A0A0C4DFX4 3053 aa7.31□□□□□ -1.24
USP53-201ENST00000274030 IGLV5-48A0A075B6I7 105 aa7.3□□□□□ -1.24
USP53-201ENST00000274030 LINC00336Q6ZUF6 198 aa7.3□□□□□ -1.24
USP53-201ENST00000274030 TEX15Q9BXT5 2789 aa7.3□□□□□ -1.24
USP53-201ENST00000274030 MGAQ8IWI9 3026 aa7.3□□□□□ -1.24
USP53-201ENST00000274030 CRIPTQ9P021 101 aa7.29□□□□□ -1.24
USP53-201ENST00000274030 TNP2Q05952 138 aa7.29□□□□□ -1.24
USP53-201ENST00000274030 HTTP42858 3142 aa7.25□□□□□ -1.25
USP53-201ENST00000274030 FAM104AQ969W3 186 aa7.25□□□□□ -1.25
USP53-201ENST00000274030 UNC80Q8N2C7 3258 aa7.25□□□□□ -1.25
USP53-201ENST00000274030 WDFY4Q6ZS81 3184 aa7.24□□□□□ -1.25
USP53-201ENST00000274030 RBM12B-AS1Q9P1G2 102 aa7.24□□□□□ -1.25
USP53-201ENST00000274030 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP7.24□□□□□ -1.25
USP53-201ENST00000274030 PRR26Q8N8Z3 221 aa7.23□□□□□ -1.25
USP53-201ENST00000274030 MAP1AP78559 2803 aaPredicted RBP7.23□□□□□ -1.25
USP53-201ENST00000274030 NBEAL1Q6ZS30 2694 aa7.21□□□□□ -1.26
USP53-201ENST00000274030 CHD9Q3L8U1 2897 aa7.21□□□□□ -1.26
USP53-201ENST00000274030 FLG2Q5D862 2391 aaPredicted RBP7.2□□□□□ -1.26
USP53-201ENST00000274030 PRUNE2Q8WUY3 3088 aa7.2□□□□□ -1.26
USP53-201ENST00000274030 NOTCH1P46531 2555 aa7.19□□□□□ -1.26
USP53-201ENST00000274030 XIRP2A4UGR9 3374 aa7.17□□□□□ -1.26
USP53-201ENST00000274030 SPANXA2-OT1Q8N9U9 137 aa7.16□□□□□ -1.26
USP53-201ENST00000274030 OCR1Q9BZK8 76 aa7.16□□□□□ -1.26
USP53-201ENST00000274030 COL6A5A8TX70 2615 aa7.15□□□□□ -1.26
USP53-201ENST00000274030 CDC42SE1Q9NRR8 79 aa7.14□□□□□ -1.27
USP53-201ENST00000274030 Q6ZSA8 131 aa7.14□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 66.1 ms