RNA–Protein interactions for RNA: ENST00000215793.12

SF3A1-201, Transcript of splicing factor 3a subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3A1, Length 5,143 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-201ENST00000215793 PRRC2CQ9Y520 2896 aaKnown RBP8.94□□□□□ -0.98
SF3A1-201ENST00000215793 GIG44P09565 113 aaPredicted RBP8.94□□□□□ -0.98
SF3A1-201ENST00000215793 LINC01600Q96MT4 127 aa8.94□□□□□ -0.98
SF3A1-201ENST00000215793 PCSK5Q92824 1860 aa8.93□□□□□ -0.98
SF3A1-201ENST00000215793 A0A096LNT2 108 aa8.93□□□□□ -0.98
SF3A1-201ENST00000215793 C8orf17Q9NRJ1 99 aa8.93□□□□□ -0.98
SF3A1-201ENST00000215793 K7EIL1 84 aa8.93□□□□□ -0.98
SF3A1-201ENST00000215793 ZNF861PO60384 105 aa8.93□□□□□ -0.98
SF3A1-201ENST00000215793 KLKP1Q107X0 134 aa8.93□□□□□ -0.98
SF3A1-201ENST00000215793 TLX1NBP0CAT3 122 aa8.93□□□□□ -0.98
SF3A1-201ENST00000215793 Q8N377 158 aa8.92□□□□□ -0.98
SF3A1-201ENST00000215793 PLA2G2DQ9UNK4 145 aa8.92□□□□□ -0.98
SF3A1-201ENST00000215793 ATRQ13535 2644 aa8.92□□□□□ -0.98
SF3A1-201ENST00000215793 UQCR11O14957 56 aa8.91□□□□□ -0.98
SF3A1-201ENST00000215793 C9orf163Q8N9P6 203 aa8.91□□□□□ -0.98
SF3A1-201ENST00000215793 MAST4O15021 2626 aa8.9□□□□□ -0.98
SF3A1-201ENST00000215793 C9orf129Q5T035 196 aaKnown RBP8.9□□□□□ -0.98
SF3A1-201ENST00000215793 KRTAP10-11P60412 298 aa8.9□□□□□ -0.98
SF3A1-201ENST00000215793 A8MUN3 132 aa8.9□□□□□ -0.98
SF3A1-201ENST00000215793 A0A1B0GVX0 72 aa8.9□□□□□ -0.99
SF3A1-201ENST00000215793 LINC00304Q8N9R0 145 aa8.87□□□□□ -0.99
SF3A1-201ENST00000215793 A0A087WTM6 91 aa8.86□□□□□ -0.99
SF3A1-201ENST00000215793 DSCR10P59022 87 aa8.86□□□□□ -0.99
SF3A1-201ENST00000215793 J3QL48 77 aa8.83□□□□□ -1
SF3A1-201ENST00000215793 KRTAP10-3P60369 221 aa8.81□□□□□ -1
SF3A1-201ENST00000215793 OBSCN-AS1Q96MR7 158 aa8.81□□□□□ -1
SF3A1-201ENST00000215793 SPINT4Q6UDR6 99 aa8.8□□□□□ -1
SF3A1-201ENST00000215793 H7BZZ5 65 aa8.79□□□□□ -1
SF3A1-201ENST00000215793 CNBPP62633 177 aaKnown RBP8.79□□□□□ -1
SF3A1-201ENST00000215793 IGLV7-43P04211 117 aa8.78□□□□□ -1
SF3A1-201ENST00000215793 MIR22HGQ0VDD5 57 aa8.78□□□□□ -1
SF3A1-201ENST00000215793 BPTFQ12830 3046 aa8.78□□□□□ -1
SF3A1-201ENST00000215793 COX6B2Q6YFQ2 88 aa8.77□□□□□ -1
SF3A1-201ENST00000215793 A0A0G2JQZ4 141 aa8.77□□□□□ -1.01
SF3A1-201ENST00000215793 A0A1W2PNN7 141 aa8.77□□□□□ -1.01
SF3A1-201ENST00000215793 SPRR4Q96PI1 79 aa8.77□□□□□ -1.01
SF3A1-201ENST00000215793 A0A1W2PNM2 257 aa8.77□□□□□ -1.01
SF3A1-201ENST00000215793 PSORS1C2Q9UIG4 136 aa8.76□□□□□ -1.01
SF3A1-201ENST00000215793 ZNF575Q86XF7 245 aa8.74□□□□□ -1.01
SF3A1-201ENST00000215793 CRIPTQ9P021 101 aa8.74□□□□□ -1.01
SF3A1-201ENST00000215793 IGLV5-48A0A075B6I7 105 aa8.73□□□□□ -1.01
SF3A1-201ENST00000215793 APLNQ9ULZ1 77 aa8.73□□□□□ -1.01
SF3A1-201ENST00000215793 SPANXA2-OT1Q8N9U9 137 aa8.73□□□□□ -1.01
SF3A1-201ENST00000215793 ANAPC11Q9NYG5 84 aa8.73□□□□□ -1.01
SF3A1-201ENST00000215793 IGLV5-37A0A075B6J1 123 aa8.72□□□□□ -1.01
SF3A1-201ENST00000215793 C9orf92A6NGG3 77 aa8.72□□□□□ -1.01
SF3A1-201ENST00000215793 FLNAP21333 2647 aaKnown RBP8.72□□□□□ -1.01
SF3A1-201ENST00000215793 LINC00336Q6ZUF6 198 aa8.71□□□□□ -1.01
SF3A1-201ENST00000215793 CASC10Q5T4H9 136 aa8.71□□□□□ -1.01
SF3A1-201ENST00000215793 SMR3BP02814 79 aaPredicted RBP8.69□□□□□ -1.02
SF3A1-201ENST00000215793 KRTAP1-3Q8IUG1 177 aa8.69□□□□□ -1.02
SF3A1-201ENST00000215793 ITPR3Q14573 2671 aa8.66□□□□□ -1.02
SF3A1-201ENST00000215793 FAM104AQ969W3 186 aa8.66□□□□□ -1.02
SF3A1-201ENST00000215793 KRTAP1-1Q07627 177 aa8.66□□□□□ -1.02
SF3A1-201ENST00000215793 RBM12B-AS1Q9P1G2 102 aa8.66□□□□□ -1.02
SF3A1-201ENST00000215793 HELZ2Q9BYK8 2649 aaKnown RBP8.65□□□□□ -1.02
SF3A1-201ENST00000215793 STAB1Q9NY15 2570 aa8.65□□□□□ -1.03
SF3A1-201ENST00000215793 CD164Q04900 197 aa8.61□□□□□ -1.03
SF3A1-201ENST00000215793 OCR1Q9BZK8 76 aa8.59□□□□□ -1.03
SF3A1-201ENST00000215793 GOLGB1Q14789 3259 aaKnown RBP8.59□□□□□ -1.03
SF3A1-201ENST00000215793 KTN1-AS1Q86SY8 53 aa8.59□□□□□ -1.04
SF3A1-201ENST00000215793 Q8N1X5 172 aa8.58□□□□□ -1.04
SF3A1-201ENST00000215793 CR1P17927 2039 aa8.57□□□□□ -1.04
SF3A1-201ENST00000215793 CDC42SE1Q9NRR8 79 aa8.57□□□□□ -1.04
SF3A1-201ENST00000215793 LCA10Q71F78 164 aa8.56□□□□□ -1.04
SF3A1-201ENST00000215793 CENPEQ02224 2701 aa8.55□□□□□ -1.04
SF3A1-201ENST00000215793 CFAP46Q8IYW2 2715 aa8.53□□□□□ -1.04
SF3A1-201ENST00000215793 PRR26Q8N8Z3 221 aa8.52□□□□□ -1.05
SF3A1-201ENST00000215793 TNP2Q05952 138 aa8.52□□□□□ -1.05
SF3A1-201ENST00000215793 WIPF1O43516 503 aa8.51□□□□□ -1.05
SF3A1-201ENST00000215793 LINC01554Q52M75 96 aa8.51□□□□□ -1.05
SF3A1-201ENST00000215793 AKAP13Q12802 2813 aa8.51□□□□□ -1.05
SF3A1-201ENST00000215793 A0A0D9SG42 100 aa8.5□□□□□ -1.05
SF3A1-201ENST00000215793 Q1T7F1 81 aa8.49□□□□□ -1.05
SF3A1-201ENST00000215793 IGLV7-46A0A075B6I9 117 aa8.49□□□□□ -1.05
SF3A1-201ENST00000215793 FAM229BQ4G0N7 80 aa8.48□□□□□ -1.05
SF3A1-201ENST00000215793 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP8.48□□□□□ -1.05
SF3A1-201ENST00000215793 Q6ZSA8 131 aa8.45□□□□□ -1.06
SF3A1-201ENST00000215793 HRES1P13985 223 aa8.43□□□□□ -1.06
SF3A1-201ENST00000215793 SPRR1AP35321 89 aa8.43□□□□□ -1.06
SF3A1-201ENST00000215793 FLG2Q5D862 2391 aaPredicted RBP8.42□□□□□ -1.06
SF3A1-201ENST00000215793 CEP350Q5VT06 3117 aa8.41□□□□□ -1.06
SF3A1-201ENST00000215793 DNAH12Q6ZR08 3092 aa8.41□□□□□ -1.06
SF3A1-201ENST00000215793 PLAC8Q9NZF1 115 aa8.41□□□□□ -1.06
SF3A1-201ENST00000215793 A0A1B0GU33 70 aa8.4□□□□□ -1.06
SF3A1-201ENST00000215793 MMP24-AS1A0A0U1RRL7 71 aa8.4□□□□□ -1.07
SF3A1-201ENST00000215793 TEP1Q99973 2627 aaKnown RBP8.39□□□□□ -1.07
SF3A1-201ENST00000215793 CHD6Q8TD26 2715 aa8.39□□□□□ -1.07
SF3A1-201ENST00000215793 NBEAL1Q6ZS30 2694 aa8.38□□□□□ -1.07
SF3A1-201ENST00000215793 SETXQ7Z333 2677 aaKnown RBP8.37□□□□□ -1.07
SF3A1-201ENST00000215793 SPRR1BP22528 89 aa8.37□□□□□ -1.07
SF3A1-201ENST00000215793 Q75L30 129 aa8.37□□□□□ -1.07
SF3A1-201ENST00000215793 LUZP6Q538Z0 58 aa8.36□□□□□ -1.07
SF3A1-201ENST00000215793 ZCCHC13Q8WW36 166 aaKnown RBP8.35□□□□□ -1.07
SF3A1-201ENST00000215793 Q8NDZ9 215 aa8.35□□□□□ -1.07
SF3A1-201ENST00000215793 TEX15Q9BXT5 2789 aa8.34□□□□□ -1.07
SF3A1-201ENST00000215793 LINC01558Q9Y6Z2 57 aa8.34□□□□□ -1.07
SF3A1-201ENST00000215793 CAMK2N1Q7Z7J9 78 aa8.33□□□□□ -1.08
SF3A1-201ENST00000215793 Q8N9P0 234 aaPredicted RBP8.32□□□□□ -1.08
SF3A1-201ENST00000215793 LINC00472Q9H8W2 130 aa8.31□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 72.5 ms