RNA–Protein interactions for RNA: ENST00000641575.1

SCN1A-219, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 BASIC

Gene SCN1A, Length 12,874 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-219ENST00000641575 A0A1B0GU69 56 aa2.05□□□□□ -2.08
SCN1A-219ENST00000641575 RPL37AP61513 92 aaKnown RBP2.05□□□□□ -2.08
SCN1A-219ENST00000641575 DEFB136Q30KP8 78 aa2.05□□□□□ -2.08
SCN1A-219ENST00000641575 LINC00308Q8TCZ7 52 aa2.04□□□□□ -2.08
SCN1A-219ENST00000641575 IGHV7-81A0A0B4J1V7 117 aa2.04□□□□□ -2.08
SCN1A-219ENST00000641575 IGLV2-11P01706 119 aa2.04□□□□□ -2.08
SCN1A-219ENST00000641575 C1orf147Q96MC9 270 aaPredicted RBP2.04□□□□□ -2.08
SCN1A-219ENST00000641575 RNASE3P12724 160 aaKnown RBP2.04□□□□□ -2.08
SCN1A-219ENST00000641575 DEFB114Q30KQ6 69 aa2.04□□□□□ -2.08
SCN1A-219ENST00000641575 LINC01006Q8NI28 216 aa2.04□□□□□ -2.08
SCN1A-219ENST00000641575 IGLV4-60A0A075B6I1 120 aa2.04□□□□□ -2.08
SCN1A-219ENST00000641575 WT1-ASQ06250 92 aa2.04□□□□□ -2.08
SCN1A-219ENST00000641575 PATE2Q6UY27 113 aa2.04□□□□□ -2.08
SCN1A-219ENST00000641575 MUC22E2RYF6 1773 aaPredicted RBP2.04□□□□□ -2.08
SCN1A-219ENST00000641575 IGLV7-43P04211 117 aa2.04□□□□□ -2.08
SCN1A-219ENST00000641575 HCG22E2RYF7 251 aa2.04□□□□□ -2.08
SCN1A-219ENST00000641575 A0A087WVE0 104 aa2.03□□□□□ -2.08
SCN1A-219ENST00000641575 C19orf84I3L1E1 186 aa2.03□□□□□ -2.08
SCN1A-219ENST00000641575 LINC00205P59089 165 aa2.03□□□□□ -2.08
SCN1A-219ENST00000641575 Q6ZTC4 211 aa2.03□□□□□ -2.08
SCN1A-219ENST00000641575 C2orf91Q6ZV80 131 aa2.03□□□□□ -2.08
SCN1A-219ENST00000641575 LY6HO94772 140 aa2.03□□□□□ -2.08
SCN1A-219ENST00000641575 PRLHP81277 87 aa2.03□□□□□ -2.08
SCN1A-219ENST00000641575 PCOTHQ58A44 107 aa2.03□□□□□ -2.08
SCN1A-219ENST00000641575 IGHV3OR16-9A0A0B4J2B5 98 aa2.03□□□□□ -2.08
SCN1A-219ENST00000641575 DMXL2Q8TDJ6 3036 aa2.03□□□□□ -2.08
SCN1A-219ENST00000641575 TENM4Q6N022 2769 aa2.03□□□□□ -2.08
SCN1A-219ENST00000641575 LOC100131303A0A0U1RQF7 123 aa2.03□□□□□ -2.08
SCN1A-219ENST00000641575 EGFEM1PQ0D2K5 195 aa2.03□□□□□ -2.08
SCN1A-219ENST00000641575 KIF25-AS1Q9Y6Z4 181 aa2.03□□□□□ -2.08
SCN1A-219ENST00000641575 SPINK1P00995 79 aa2.03□□□□□ -2.08
SCN1A-219ENST00000641575 SSBP3-AS1Q7Z2R9 100 aa2.03□□□□□ -2.08
SCN1A-219ENST00000641575 PCNTO95613 3336 aa2.03□□□□□ -2.08
SCN1A-219ENST00000641575 C1orf64Q8NEQ6 169 aa2.03□□□□□ -2.08
SCN1A-219ENST00000641575 IGLV3-1P01715 115 aa2.03□□□□□ -2.09
SCN1A-219ENST00000641575 ZNF22P17026 224 aaPredicted RBP2.03□□□□□ -2.09
SCN1A-219ENST00000641575 C17orf58Q2M2W7 97 aa2.03□□□□□ -2.09
SCN1A-219ENST00000641575 MAPKAPK5-AS1Q8N8E1 139 aa2.03□□□□□ -2.09
SCN1A-219ENST00000641575 FAM167A-AS1Q96KT0 104 aa2.03□□□□□ -2.09
SCN1A-219ENST00000641575 Q8N814 137 aa2.02□□□□□ -2.09
SCN1A-219ENST00000641575 PRO0461Q9UI25 63 aa2.02□□□□□ -2.09
SCN1A-219ENST00000641575 PSORS1C2Q9UIG4 136 aa2.02□□□□□ -2.09
SCN1A-219ENST00000641575 C15orf65H3BRN8 121 aa2.02□□□□□ -2.09
SCN1A-219ENST00000641575 Q6ZSA8 131 aa2.02□□□□□ -2.09
SCN1A-219ENST00000641575 GDF5OSQ5U4N7 250 aa2.02□□□□□ -2.09
SCN1A-219ENST00000641575 C20orf203Q8NBC4 194 aa2.02□□□□□ -2.09
SCN1A-219ENST00000641575 A0A1B0GUV1 79 aa2.02□□□□□ -2.09
SCN1A-219ENST00000641575 BRWD1-AS2P59051 145 aa2.02□□□□□ -2.09
SCN1A-219ENST00000641575 Q8IZM0 81 aa2.02□□□□□ -2.09
SCN1A-219ENST00000641575 IGLV4-3A0A075B6K6 122 aa2.02□□□□□ -2.09
SCN1A-219ENST00000641575 Q8N3U1 123 aa2.02□□□□□ -2.09
SCN1A-219ENST00000641575 COL4A1P02462 1669 aa2.02□□□□□ -2.09
SCN1A-219ENST00000641575 TENM2Q9NT68 2774 aa2.02□□□□□ -2.09
SCN1A-219ENST00000641575 IGHV6-1A0A0B4J1U7 121 aa2.02□□□□□ -2.09
SCN1A-219ENST00000641575 CYSRT1A8MQ03 144 aa2.02□□□□□ -2.09
SCN1A-219ENST00000641575 NTM-AS1Q6ZSK4 140 aa2.02□□□□□ -2.09
SCN1A-219ENST00000641575 LAMA2P24043 3122 aaKnown RBP2.01□□□□□ -2.09
SCN1A-219ENST00000641575 AVPP01185 164 aa2.01□□□□□ -2.09
SCN1A-219ENST00000641575 VWCEQ96DN2 955 aa2.01□□□□□ -2.09
SCN1A-219ENST00000641575 CRIP2P52943 208 aaPredicted RBP2.01□□□□□ -2.09
SCN1A-219ENST00000641575 SEC61BP60468 96 aaKnown RBP2.01□□□□□ -2.09
SCN1A-219ENST00000641575 FHL3Q13643 280 aa2.01□□□□□ -2.09
SCN1A-219ENST00000641575 LINC01561Q8N1V8 128 aa2.01□□□□□ -2.09
SCN1A-219ENST00000641575 ZANQ9Y493 2812 aa2.01□□□□□ -2.09
SCN1A-219ENST00000641575 XIRP2A4UGR9 3374 aa2.01□□□□□ -2.09
SCN1A-219ENST00000641575 OXTP01178 125 aa2.01□□□□□ -2.09
SCN1A-219ENST00000641575 K7EIM0 57 aa2.01□□□□□ -2.09
SCN1A-219ENST00000641575 LINC01547P58512 204 aaPredicted RBP2.01□□□□□ -2.09
SCN1A-219ENST00000641575 SPRNQ5BIV9 151 aa2.01□□□□□ -2.09
SCN1A-219ENST00000641575 CYP4F30PQ9H0H9 118 aa2.01□□□□□ -2.09
SCN1A-219ENST00000641575 SMIM11BQ8TCY0 68 aa2.01□□□□□ -2.09
SCN1A-219ENST00000641575 C6orf48Q9UBA6 75 aa2.01□□□□□ -2.09
SCN1A-219ENST00000641575 DEFB4AO15263 64 aa2.01□□□□□ -2.09
SCN1A-219ENST00000641575 Q8NBF4 154 aa2.01□□□□□ -2.09
SCN1A-219ENST00000641575 CDKN2A-AS1Q9UH64 79 aa2.01□□□□□ -2.09
SCN1A-219ENST00000641575 Q9UF83 564 aa2.01□□□□□ -2.09
SCN1A-219ENST00000641575 IGLV6-57P01721 117 aa2□□□□□ -2.09
SCN1A-219ENST00000641575 IGLV2-14P01704 120 aa2□□□□□ -2.09
SCN1A-219ENST00000641575 LCA10Q71F78 164 aa2□□□□□ -2.09
SCN1A-219ENST00000641575 TRAV22A0A0B4J277 110 aa2□□□□□ -2.09
SCN1A-219ENST00000641575 I3L2K1 104 aa2□□□□□ -2.09
SCN1A-219ENST00000641575 IGLV5-37A0A075B6J1 123 aa2□□□□□ -2.09
SCN1A-219ENST00000641575 FAM215AQ9Y5M1 114 aa2□□□□□ -2.09
SCN1A-219ENST00000641575 Q6ZSV7 163 aa2□□□□□ -2.09
SCN1A-219ENST00000641575 IGLV1-51P01701 117 aa2□□□□□ -2.09
SCN1A-219ENST00000641575 ELOF1P60002 83 aaKnown RBP2□□□□□ -2.09
SCN1A-219ENST00000641575 PROK2Q9HC23 129 aa2□□□□□ -2.09
SCN1A-219ENST00000641575 A8MUN3 132 aa1.99□□□□□ -2.09
SCN1A-219ENST00000641575 ZNF580Q9UK33 172 aa1.99□□□□□ -2.09
SCN1A-219ENST00000641575 ZNF80P51504 273 aaPredicted RBP1.99□□□□□ -2.09
SCN1A-219ENST00000641575 A0A087WYN8 130 aa1.99□□□□□ -2.09
SCN1A-219ENST00000641575 IGLV1-40P01703 118 aa1.99□□□□□ -2.09
SCN1A-219ENST00000641575 IGLV8-61A0A075B6I0 122 aa1.99□□□□□ -2.09
SCN1A-219ENST00000641575 PLAC4Q8WY50 150 aa1.99□□□□□ -2.09
SCN1A-219ENST00000641575 PRR15Q8IV56 129 aa1.99□□□□□ -2.09
SCN1A-219ENST00000641575 IGKV2D-30A0A075B6S6 120 aa1.99□□□□□ -2.09
SCN1A-219ENST00000641575 RTL8CO15255 209 aa1.99□□□□□ -2.09
SCN1A-219ENST00000641575 IGKV2-30P06310 120 aa1.99□□□□□ -2.09
SCN1A-219ENST00000641575 LYPD5Q6UWN5 251 aa1.99□□□□□ -2.09
SCN1A-219ENST00000641575 LINC00167Q96N53 147 aa1.99□□□□□ -2.09
Retrieved 100 of 20,778 RNA–protein pairs in 47 ms